Genetic and genomic analysis of the AT-rich centromere DNA element II by Richard E. Baker and Kelly Rogers

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Sequence analysis of a 33.1 kb fragment from the left arm of Saccharomyces cerevisiae chromosome X, including putative proteins...

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Yeast Plasmid Miniprep - Yeast Plasmid Isolation Kit

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Fungus!

真菌 - 维基百科，自由的百科全书

Geotrichum candidum

Point mutation

Blastocladiomycota

Allomyces

Reference genome

Physodermataceae

Physoderma

Nigrospora sphaerica

Lactarius

Phylloporus

Phylloporus leucomycelinus

Copper fist

Skeletocutis

Agaricus

Galzinia

Fusarium subglutinans

Rebecca Yahr

Flucytosine

John W. Taylor (professor)

Polyploidy

Dolichousnea

Nematoctonus

Serpin

Phytophthora alni

Cunninghamella elegans

White-nose syndrome

Turbinellus stereoides

Turbinellus floccosus

Turbinellus kauffmanii

Turbinellus fujisanensis

Species

Pleural effusion

Bryozoa

Chitinase

Plant

Bioindicator

Ffwng - Wicipedia

白色念珠菌 - 维基百科，自由的百科全

List of parasites of humans

Grafting

Aspirin

Earliest known life forms

Plant reproductive morphology

Candida blankii

Kew Gardens

Genome size

Sparassis

Interferon

Mitochondrial DNA

Topical antifungal drugs

Aflatoxin B1

Batrachochytrium dendrobatidis

Cell cycle

Truffle

Alternaria japonica

Ramaria cokeri

Microsporum canis

Biometal (biology)

Herbal medicine

Crinipellis zonata

Pathogens19

• However, their application to complex fungal pathogens has remained limited due to the frequent inability to culture these pathogens in the absence of their host and their large genome sizes. (biomedcentral.com)
• Here, we describe the development of Mobile And Real-time PLant disEase (MARPLE) diagnostics, a portable, genomics-based, point-of-care approach specifically tailored to identify individual strains of complex fungal plant pathogens. (biomedcentral.com)
• [ 1 , 2 ] That such contact only rarely results in infection is a testimony to the efficiency with which human immune defenses recognize and eliminate fungal pathogens. (medscape.com)
• Using DNA sequencing-based diagnostics, the results herein document the first identification and quantification of significant bacterial, rather than mycotic, pathogens to the clinical manifestation of dystrophic nails. (japmaonline.org)
• Detection of airborne propagules of fungi, plant pathogens etc (e.g. sporangia of the potato late blight pathogen Phytophthora infestans ) and pollen using novel air sampling devices, flow cytometry and DNA metabarcoding. (aber.ac.uk)
• Full taxonomic characterisation of fungal communities is necessary for establishing ecological associations and early detection of pathogens and invasive species. (pensoft.net)
• Here we link metabarcoding from the ITS2 and LSU D1-D2 regions to characterise fungal communities associated with bark beetles ( Scolytinae ), the likely vectors of several tree pathogens. (pensoft.net)
• This review summarizes the epidemiological and clinical data of the majority of healthcare-associated outbreaks reported over the last 6 years caused by uncommon or new fungal pathogens, as well as the contribution of WGS as support to investigate the source of infection and the most frequent control measures used. (biomedcentral.com)
• Since many publications have so far been interested in classical fungal infections, we aim to decipher the most notable healthcare-associated outbreaks caused in the last 6 years by uncommon or new fungal pathogens (summarized in Table 1 ). (biomedcentral.com)
• Hyphal malformation was also observed in both of the fungal pathogens. (tubitak.gov.tr)
• We're able to detect viruses, bacteria and fungal pathogens that are found in bees, that are also found in the honey," said Bateson. (agweek.com)
• Zack Bateson lifts a honey sample from a hive near Barnesville, Minnesota, to be tested for the DNA of pathogens that cause diseases, which can contribute to the death of a bee colony. (agweek.com)
• The possible mechanisms of the joint action of thiosulfonates and biosurfactants on fungal pathogens are proposed. (intechopen.com)
• Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defences. (mpg.de)
• In the case of opportunistic fungal pathogens, an understanding of host immune dysfunction is as important as an appreciation of which fungal genes may encode definable attributes of virulence. (biomedcentral.com)
• But the rapid progress made in identifying molecular virulence factors in several fungal pathogens has also raised some caveats and paradoxes that require resolution. (biomedcentral.com)
• capsulatum is a dimorphic fungus whose conidia (spores) are inhaled, germinate in the lungs and convert to a budding yeast form that, uniquely among fungal pathogens, becomes an intracellular parasite that is ingested by pulmonary macrophages but survives and multiplies within phagolysosomes. (biomedcentral.com)
• The versatility of targeted amplicon deep sequencing (TADS) enables detection of new pathogens as well as known pathogens that are difficult-to-culture and has facilitated the detailed characterization of bacterial, viral, and fungal communities from diverse biological and environmental specimens. (biomedcentral.com)
• Laboratory sections serve as international resources to identify and characterize bacterial and fungal pathogens. (cdc.gov)

Fungi34

• Fungal DNA barcoding is the process of identifying species of the biological kingdom Fungi through the amplification and sequencing of specific DNA sequences and their comparison with sequences deposited in a DNA barcode database such as the ISHAM reference database, or the Barcode of Life Data System (BOLD). (wikipedia.org)
• In this attempt, DNA barcoding relies on universal genes that are ideally present in all fungi with the same degree of sequence variation. (wikipedia.org)
• Fungal DNA barcoding can help to identify and associate anamorphic and teleomorphic stages of fungi, and through that to reduce the confusing multitude of fungus names. (wikipedia.org)
• The success of identification of fungi by means of DNA barcode sequences stands and falls with the quantitative (completeness) and qualitative (level of identification) aspect of the reference database. (wikipedia.org)
• 2012) proposed the ITS region as primary DNA barcode region for the genetic identification of fungi. (wikipedia.org)
• This document describes some of the target genes and primers that can be used for DNA sequence-based identification of fungi and the PCR conditions with which to use those primers. (cdc.gov)
• DNA from contaminating external fungi should be eliminated, if possible, prior to determining if there are endosymbiotic fungi associated with a laboratory colony of the Asian citrus psyllid Diaphorina citri Kuwayama (Hemiptera: Psyllidae). (bioone.org)
• Fungi were less diverse but most dissimilar in composition in the most water-damaged classrooms compared to the least water-damaged, indicating differential effects of individual classroom water-damage on fungal compositions. (cdc.gov)
• The foresters have sent samples of soil from their plots to the researchers, who use DNA sequencing to determine which fungi are present in the soil. (insidescience.org)
• Our result reveal a comprehensive understanding of fungal community structure of natural O. sinensis , provide new insight into O. sinensis associated fungi, and support that microbiota of natural O. sinensis is an untapped source for novel bioactive metabolites discovery. (biomedcentral.com)
• The ancestor of termites relied on gut symbionts for degradation of plant material, an association that persists in all termite families.1,2 However, the single-lineage Macrotermitinae has additionally acquired a fungal symbiont that complements digestion of food outside the termite gut.3 Phylogenetic analysis has shown that fungi grown by these te. (researchgate.net)
• Conventional studies of fungal communities have been conducted by isolating and culturing the fungi associated with insect specimens ( Batra 1963 ), but this overlooked many unculturable species. (pensoft.net)
• In order to address mechanisms responsible for fungal dispersal, this study will focus on determining which species, population and environmental characteristics correlate with dispersal inferred from population genotype patterns throughout a community of fungi. (europa.eu)
• To monitor the effect of land use change, different fungal parameters such as richness, diversity, community composition, root colonization by arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) fungi, spore density, ergosterol, and phospholipid fatty acid (PLFA) content and AM fungal glomalin related soil protein (GRSP) were studied. (sisef.it)
• Given this data, we would hypothesize that: (i) the evolution of the fungal PPIases is driven, at least in part, by the size of the proteome, (ii) evolutionary pressures differ both between the different PPIase families and the different fungi, and (iii) whilst the cyclophilins and parvulins have evolved to perform conserved functions, the FKBPs have evolved to perform more variable roles. (biomedcentral.com)
• Usually Aspergillus and Candida are fungi that cause major fungal infection leading to mortality amongst immunocompromised patients ( 10 ). (yeastinfectionadvisor.com)
• By comparing the DNA sequences of these fungi to those of other species around the world, the team was also able to piece together where the fungal biodiversity on the remote island may have originated. (berkeley.edu)
• A further aim is to promote fungal taxonomy by employing a polythetic approach to clarify the true phylogeny and relationships within the kingdom Fungi. (ingentaconnect.com)
• But as an editorial in the journal pointed out, this sample represented one of many "dark matter fungi" that populate unknown regions of the fungal tree of life. (lanl.gov)
• A massive genetic survey of the world's fungi - an often-overlooked group of organisms with important ties to human health and the economy - has revealed the main drivers of fungal diversity. (aaas.org)
• But, some fungi defy this trend and, in general, the overall number of fungal species doesn't decline with latitude as sharply as plant species do, they say. (aaas.org)
• Our study shows that it's only possible to assign a species name to 10% of the fungi found in soil, indicating how little we know about fungal diversity," said Tedersoo. (aaas.org)
• DNA methylation is an important epigenetic control mechanism that in many fungi is restricted to genomic regions containing transposable elements (TEs). (biomedcentral.com)
• Two DNA methyltransferases, Dim2 and Dnmt5, are known to perform methylation at cytosines in fungi. (biomedcentral.com)
• In mammals, DNA methylation is largely restricted to CG sites, while plants and fungi show methylation in each of the genomic contexts [ 8 ]. (biomedcentral.com)
• Compared to animal and plant genomes, fungi typically have smaller and less complex genomes, and they serve as important eukaryote models for various cellular processes including DNA methylation [ 9 ]. (biomedcentral.com)
• Much of the initial research on DNA methylation in fungi was performed in the saprophytic ascomycete fungus Neurospora crassa . (biomedcentral.com)
• Molecular biotyping, epidemiology and fungal susceptibilities of opportunistic human pathogenic fungi, ICMR , (2002-2005). (jnu.ac.in)
• Sophisticated molecular biological research has revealed many virulence attributes in at least four pathogenic fungi, but the future study of fungal virulence requires investigators to distinguish between molecules that directly interact with the host, molecules that regulate these, and molecules that are always required for fungal growth and survival, independent of the host. (biomedcentral.com)
• Almost all of the fungi that cause fatal diseases gain access to the host via the lungs by inhalation of spores, yet Candida species, which account for a high morbidity and mortality in individuals with reduced numbers of neutrophils, become pathogenic only when lowered host defences allow the fungal cells to pass from the gut into the bloodstream. (biomedcentral.com)
• 2010. ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. (unimilitar.edu.co)
• Additionally, multiple fungal-bacterial-immune ecologies were detected across tumors, and intratumoral fungi stratified clinical outcomes, including immunotherapy response, they noted. (medscape.com)
• A revised version of Chapter F of the International Code of Nomenclature for algae, fungi, and plants is presented, incorporating amendments approved by the Fungal Nomenclature Session of the 11th International Mycological Congress held in San Juan, Puerto Rico in July 2018. (biomedcentral.com)
• As specified by Division III of the Shenzhen Code , participation in the guiding vote was extended to (1) authors of proposals, (2) members of the Nomenclature Committee for Fungi (NCF), (3) members of the International Mycological Association (IMA), and of its Member Mycological Organizations (MMOs), and (4) members of four additional organizations that were nominated by the Fungal Nomenclature Bureau. (biomedcentral.com)

Infections24

• Blindness due to corneal infections is a serious problem next to cataract [ 1 ] and fungal infections of the cornea have emerged as a major eye disease globally. (hindawi.com)
• The serum CrAg-latex agglutination the fungal infections and preserve engraftment. (cdc.gov)
• Invasive fungal diseases are increasingly important opportunistic infections that are intimately linked to immune-suppression in the context of cytotoxic treatment of neoplastic diseases, stem cell and solid-organ transplantation, and primary immune deficiencies. (medscape.com)
• Consequently, invasive fungal infections almost invariably signify an immunocompromised state. (medscape.com)
• on the one hand, the availability of advanced diagnostic tools, including high-end imaging modalities such as high-resolution computerized tomography and MRI, as well as nonculture-based fungal detection assays, allow these infections to be diagnosed earlier than was previously possible. (medscape.com)
• However, despite these advances, mortality rates from invasive fungal infections remain extremely high, suggesting that the underlying immune deficiency must be addressed to facilitate further reductions in fungal-related mortality. (medscape.com)
• On June 3, a local physician notified the Springfield-Greene County Health Department and the Missouri Department of Health and Senior Services (MODHSS) of two patients hospitalized with tornado injuries who had suspected necrotizing fungal soft-tissue infections. (cdc.gov)
• MODHSS initiated active surveillance for such infections at hospitals and laboratories serving patients injured in the tornado, and CDC began assisting MODHSS with identification of fungal isolates. (cdc.gov)
• By June 10, eight patients with necrotizing fungal soft-tissue wound infections caused by Mucormycetes (formerly Zygomycetes) were identified. (cdc.gov)
• Worldwide, millions of people suffer debilitating and even fatal fungal infections. (sciencenews.org)
• In this study, the applicability of such assays for the detection of fungal infections in grape, soil, and must samples was tested and optimized. (infowine.com)
• The application of LAMP assays for the detection of fungal infections prior to the occurrence of visual mold symptoms by testing samples from vineyards is particularly beneficial. (infowine.com)
• Outbreaks of healthcare-associated fungal infections have repeatedly been described over recent years, often caused by new or uncommon species. (biomedcentral.com)
• Furthermore, these outbreaks identified new populations under threat in addition to those commonly at risk for invasive fungal infections, such as immunosuppressed and intensive care unit patients. (biomedcentral.com)
• In fact, thousands of deaths can be traced every year to fungal infections around medical implants. (mit.edu)
• The resulting immune system abnormalities make people with AD-HIES highly susceptible to infections, particularly bacterial and fungal infections of the lungs and skin. (medlineplus.gov)
• Illness in a person with compelling evidence (e.g., culture, histopathology, seroconversion) of a different fungal infection, such as histoplasmosis or coccidioidomycosis, and meeting only non-confirmatory laboratory criteria for blastomycosis should not be counted as a case of blastomycosis since other fungal infections can cause false positive Blastomyces antigen and antibody test results. (cdc.gov)
• The fungal superbug Candida auris causes serious and often fatal infections. (cdc.gov)
• So generally, as you all know who work in healthcare and see infections, you know that most of the time the public thinks of fungal disease as what is shown in the picture here. (cdc.gov)
• So this is a classic, very advanced case of onychomycosis and clearly probably the most common clinical manifestation of fungal infections out there. (cdc.gov)
• But, thankfully, as bad as these fungal infections look they aren't deadly and what we are obviously concerned about is deadly infections. (cdc.gov)
• Candidemia, which is the bloodstream manifestation of fungal infections due to Candida , turns out in recent studies that we've looked at are the most common if not some of the most common healthcare associated bloodstream infections in our country, in the United States. (cdc.gov)
• The risk factors for candid are sometimes we call in the fungal world the other C. diff , have somewhat similar characteristics in that broad spectrum antibacterial use is a very common association with those who develop infections due to Candida . (cdc.gov)
• Athlete's Foot or tinea pedis, and fungal nail infections, also known as onychomycosis or tinea unguium. (cdc.gov)

Species33

• The interspecific variation, i.e., the variation between species, in the chosen DNA barcode gene should exceed the intraspecific (within-species) variation. (wikipedia.org)
• Moreover, fungal species can comprise multiple strains that can vary in their morphology or in traits such as carbon- and nitrogen utilisation, which has often led to their description as different species, eventually producing long lists of synonyms. (wikipedia.org)
• Trichophyton species DNA is amplified very poorly by the ITS primer set used for most other molds. (cdc.gov)
• Both serological and DNA-based methods typically require high initial financial investments and specialised expertise to develop new assays, are limited in sample capacity, frequently are not reliable at the asymptomatic stage, and provide limited information beyond the species level [ 1 ]. (biomedcentral.com)
• It is demonstrated that even small samples of seawater contain eDNA from a wide range of local fish species, which indicates the potential of using metabarcoding of environmental DNA (eDNA) obtained directly from seawater samples to account for marine fish biodiversity. (semanticscholar.org)
• Environmental DNA for Detection of Endangered Grouper Species (Epinephelus spp. (semanticscholar.org)
• The Department of Energy's Joint Genome Institute has a library of genomes for well over a thousand fungal species, which Averill's team used to understand the functional genetics of the samples. (insidescience.org)
• The fungal species (Jugulospora rotula and Emericellopsis terricola in NPK and NPKM soils, respectively) were identified as keystone species in network and may significantly contribute to residue-C decomposition. (olmdiagnostics.com)
• Metabarcoding is now widely applied in characterising the species composition and diversity of fungal communities associated with insects. (pensoft.net)
• However, molecular techniques, such as DNA sequencing, should be used to identify Aspergillus species in cases that involve either isolates with atypical growth or concern for resistance. (medscape.com)
• Also, large nosocomial outbreaks due to uncommon fungal species such as Exserohilum rostratum and Sarocladium kiliense , were both linked to contamination of medical products, however the source of another outbreak, caused by Saprochaete clavata , remains unresolved. (biomedcentral.com)
• The occurrence of sporadic episodes related to other fungal species and other less immunocompromised populations remained a rare phenomenon. (biomedcentral.com)
• Nevertheless, several recent reports have highlighted the emergence of new healthcare-associated outbreak phenomena due to fungal species previously unknown or uncommon in clinical practice. (biomedcentral.com)
• Also, others healthcare-associated outbreaks due to uncommon fungal species, such as Saprochaete clavata, are still unresolved as no source of contamination has yet been documented. (biomedcentral.com)
• The kits isolate both genomic DNA and a broad range of RNA species without the use of phenol. (selectscience.net)
• Unification of the methodology, detailed descriptions of environmental factors, more reference sequences in public databases, and especially data on ecology and quantitative parameters of key fungal species would significantly improve the understanding of this issue. (sisef.it)
• Chaetomium are a common fungal species with a ubiquitous distribution with over 80 species currently known. (mold-help.org)
• At first we will of course not be able to identify all the fungal species, because they have not yet been described scientifically. (helsinki.fi)
• Our project will reveal which fungal families have the greatest numbers of undescribed species, where they are in the world, and where we need additional taxonomic research the most. (helsinki.fi)
• Recent studies on the fungal families Lophiostomataceae and Lophiotremataceae ( Pleosporales ) have provided varying phylogenetic and taxonomic results concerning constituent genera and species. (ingentaconnect.com)
• They used a DNA sequencing technique, known as pyrosequencing, to study a short genetic marker within the myriad of fungal species that these samples contained. (aaas.org)
• It was assumed that plant and fungal species richness are tightly coupled. (aaas.org)
• The researchers' vast study also highlights the gap between known and described fungal species, suggesting that previous studies may have overestimated fungal richness. (aaas.org)
• This devastating fungal infection has not yet arrived in Australia, but is sweeping Europe and the US and threatens several of our bat species with extinction if it should reach these shores. (edu.au)
• as well as several fungal species were isolated from different grains. (scialert.net)
• Cortesão investigates fungal species' capacity to grow in the conditions of space with the aim of harnessing the microorganisms as biological factories for materials people might need on long space voyages. (eurekalert.org)
• Pathogenic fungal species differ in their cell morphologies: most exist as filamentous moulds (with hyphae) in the environment, but the most virulent among them often change to a unicellular (yeast or spherule) form when they invade tissues. (biomedcentral.com)
• The diversity of pathogenic potency, cellular form and route of invasion between fungal species makes it impossible to draw general conclusions about their molecular virulence attributes. (biomedcentral.com)
• An integrated molecular and morphological study to design a DNA barcode discrimination protocol for Fusarium species involved in dry root disease of citrus. (unimilitar.edu.co)
• 2009. Multiple copies of cytochrome oxidase 1 in species of the fungal genus Fusarium. (unimilitar.edu.co)
• The internal transcribed spacer (ITS) region of nuclear ribosomal DNA is the most frequently used marker for distinguishing plant species. (academicjournals.org)
• Diagnosis based solely on fungal morphology is unreliable due to the ubiquitous nature of non-pathogenic Fusarium species. (agdia.com)
• This taxon is best considered a distinct species, as it was not recovered as part of the S. graminea species clade based on a DNA phylogeny (Ito et al. (usf.edu)

Bacterial and fungal3

• LOOXSTER sample preparation kit concentrates bacterial and fungal DNA! (cbinsights.com)
• DNA testing can determine the viral, bacterial and fungal disease load carried by a bee. (agweek.com)
• Under laminar flow, a suspension of respective bacterial and fungal cells (20 billion cells/mL) was processed as per the Homoeopathic Pharmacopoeia of India (HPI). (thieme-connect.de)

Pathogen7

• However, molecular-age medicine now includes DNA-based tools to universally assess any microbe or pathogen with a known DNA sequence. (japmaonline.org)
• Bateson is now using the same process to track pathogen DNA in honey samples. (agweek.com)
• Palka-Santini M, Cleven BE, Eichinger L, Krönke M, Krut O. Large scale multiplex PCR improves pathogen detection by DNA microarrays. (aaem.pl)
• Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen. (mpg.de)
• A fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition. (mpg.de)
• The transcription factor Zt107320 affects the dimorphic switch, growth and virulence of the fungal wheat pathogen Zymoseptoria tritici. (mpg.de)
• It is certainly an honor and a pleasure to be here during our first inaugural Fungal Disease Awareness Week, and I look forward to talking to you a little bit about an emerging fungal pathogen that is really causing some consternation and challenges amongst the healthcare community. (cdc.gov)

Spores7

• Although cutaneous mucormycosis often is opportunistic, affecting patients with diabetes, hematologic malignancy or solid organ transplant ( 1 ), A. trapeziformis often is associated with immunocompetent hosts after traumatic implantation of fungal spores ( 2 ). (cdc.gov)
• The vortex that forms in the machine separates small particles such as fungal spores into a test tube. (helsinki.fi)
• The disease spreads when fungal spores blow from an infected tree onto an uninfected specimen, which they invade. (thenakedscientists.com)
• We now know that [fungal spores] resist radiation much more than we thought they would, to the point where we need to take them into consideration when we are cleaning spacecraft, inside and outside," Cortesao said. (eurekalert.org)
• The new research also suggests planetary protection protocols designed to prevent visiting spacecraft from contaminating other planets and moons in our solar system with microorganisms from Earth may need to consider fungal spores a more serious threat. (eurekalert.org)
• Cortesão simulated space radiation in the laboratory, hitting fungal spores with ionizing radiation from X-rays, heavy ions and a type of high-frequency ultraviolet light that doesn't reach Earth's surface but is present in space. (eurekalert.org)
• Information obtained from the analysis of dust, particularly biological particles such as pollen, plant parts, and fungal spores, has great utility in forensic geolocation. (mit.edu)

Conducting molecular1

• To date, no consistent method has been developed to eliminate microbial DNA from the external surfaces of arthropods prior to conducting molecular surveys of endosymbionts. (bioone.org)

Sequences11

• The region is flanked by the DNA sequences for the ribosomal small subunit (SSU) or 18S subunit at the 5' end, and by the large subunit (LSU) or 28S subunit at the 3' end. (wikipedia.org)
• Genomic DNA from dust was extracted for internal transcribed spacer 1 Illumina MiSeq sequencing to identify operational taxonomic units (OTUs) organized from DNA sequences. (cdc.gov)
• We identified 62 yeast genera, representing 19.6% of DNA sequences. (cdc.gov)
• A total of 280,519 high-quality sequences, belonging to 5 fungal phyla, 15 classes, 41 orders, 79 families, 112 genera, and 352 putative operational taxonomic units (OTUs) were obtained from natural O. sinensis using high-throughput sequencing. (biomedcentral.com)
• Loop-mediated isothermal amplification (LAMP) [1] is a modern technology for fast and sensitive amplification of specific DNA sequences under isothermal conditions. (infowine.com)
• It accounted for over 50% of fungal DNA sequences sampled from the filter and was found repeatedly in suspect air. (scientificamerican.com)
• The fungal isolates were identified by employing morphological features and phylogenetic characterization by internal transcribed spacer (ITS) sequences. (researchsquare.com)
• By adding DNA sequences of 24 new strains of Lophiostomataceae and nine new strains of Lophiotremataceae to a sequence data matrix from international databases, we provide a new understanding of the relationships within these families. (ingentaconnect.com)
• Data partitions, Bayesian analysis and phylogeny of the zygomycetous fungal family Mortierellaceae, inferred from nuclear ribosomal DNA sequences. (mpg.de)
• To find out what those genes are, UK scientists have compared the DNA sequences of susceptible and more resilient ash trees. (thenakedscientists.com)
• Evolutionary trends from DNA sequences: A maximun likelihood approach. (unimilitar.edu.co)

Aspergillus7

• More importantly, Fusarium and Aspergillus are reported commonly implicating corneal ulcer and against this background the present work was undertaken so as to understand the current epidemiological trend of the two fungal keratitis. (hindawi.com)
• Among fungal aetiologies, Fusarium (216, 52.5% of 411) and Aspergillus (68, 16.5% of 411) were predominantly determined. (hindawi.com)
• In South India, the dominance of fungal keratitis, particularly of Fusarium and Aspergillus, is prevalent more than a decade and have been documented in many literatures [ 5 - 8 ]. (hindawi.com)
• For example, the filamentous fungus Aspergillus fumigatus , an important cause of invasive fungal disease in immunosuppressed individuals, disperses conidia that are inhaled daily by most humans. (medscape.com)
• Most of fungal genera in NPKM soils, especially Chaetomium, Staphylotrichum, Penicillium and Aspergillus, responded faster to residue addition than those in NPK soils. (olmdiagnostics.com)
• The guidelines recommend that both surgery and either systemic voriconazole or a lipid formulation of amphotericin B be used in invasive Aspergillus fungal sinusitis, but surgical removal alone can be used to treat an Aspergillus fungal ball of the paranasal sinus. (medscape.com)
• Among the fungal isolates, Aspergillus sp. (researchsquare.com)

Proteins3

• This process does not require RecA proteins that mediate DNA homology recognition during recombination. (pasteur.fr)
• Bacterial activity (measured as incorporation of [3H]thymidine and [14C]leucine into bacterial DNA and proteins) showed the exact opposite: an increase with N application rate and pH. (louisbolk.nl)
• Quantitative proteomic analysis of yeast DNA replication proteins. (abdn.ac.uk)

Isolates5

• Although voriconazole and other triazoles have broad-spectrum activity against causative fungal isolates, clinically no single drug was found to be effective against fungal keratitis. (hindawi.com)
• The antioxidant activity methanolic extracts of the fungal isolates were determined using modified 2,2'-diphenyl-1-picrylhydrazyl (DPPH) and 2,2'-azino-bis (3-ethylbenzothiazoline-6-sulphonicacid) (ABTS) methods. (researchsquare.com)
• Our findings suggest that fungal isolates from D. metel can be a sustainable resource for natural antioxidants. (researchsquare.com)
• These endophytic and soil fungal isolates were found to be significantly active by inhibiting the DPPH, ABTS radicals and showed active spots on the DPPH bio - autography assay. (researchsquare.com)
• It is believed that these radical anions interfere with bacterial DNA synthesis of susceptible isolates. (medscape.com)

Yeast6

• Histopathology of microbiological remission of the infection, dos- the graft showed organisms consistent with Crypto- age was adjusted on the basis of renal function coccus yeast cells, suggesting fungal pyelonephritis. (cdc.gov)
• In this study, the researchers found that baker's yeast (Saccharomyces cerevisiae) adhered to plastic plates, suggesting that like their infectious fungal cousins, yeast, too, can form biofilms. (mit.edu)
• Solution 1 Digestion Buffer is used with Zymolyase to breaks down tough yeast and fungal cell walls for DNA purification. (zymoresearch.com)
• Using a recombination-based cloning strategy in yeast, we constructed fungal heterologous expression vectors that encode the cryptic clusters. (cdc.gov)
• Clotrimazole is a broad-spectrum antifungal agent that inhibits yeast growth by altering cell membrane permeability, causing the death of fungal cells. (medscape.com)
• Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast. (yeastgenome.org)

Diseases7

• Summary of evidence for various immunotherapeutic modalities for invasive fungal diseases. (medscape.com)
• Pathogenomics-based Development of Crop-specific Diagnostics Tools for Emerging and Expanding Fungal Diseases in the U.S. (usda.gov)
• Eutypa dieback and Esca are serious fungal grapevine trunk diseases (GTDs). (usda.gov)
• Pests and fungal diseases are on the march. (brinknews.com)
• Perception of the high incidence of fungal diseases, particularly those that threaten life, has led to considerable investment in research into fungal virulence, often based on cutting-edge molecular biological approaches. (biomedcentral.com)
• Dr. Chiller is an Infectious Disease Physician, who has specialized in fungal diseases for the past 20 years. (cdc.gov)
• He leads CDC's efforts to combat fungal diseases as the Chief of the Mycotic Diseases Branch in the Office of Emerging Infectious Diseases in the National Center for Emerging and Zoonotic Infectious Diseases at CDC. (cdc.gov)

Candida1

• Fungal genomics: decoding the secrets of Candida tropicalis - in which Dr Caitlin Keighley describes the application of genomics to unravelling the reasons for the emergence of fluconazole resistance in C. tropicalis in Australia and in many regions globally. (edu.au)

Taxonomy2

• LOS ALAMOS, N.M., Sept. 28, 2017-In a step toward bridging the gap between fungal taxonomy and molecular ecology, scientists from several institutions including Los Alamos National Laboratory have characterized a sample of "mystery" fungus collected in North Carolina and found its home in the fungal tree of life. (lanl.gov)
• DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. (unimilitar.edu.co)

Infection6

• The corneal infection of fungal etiology is very common and comprising at least 50% of all culture positive cases in India [ 2 ]. (hindawi.com)
• A confirmed case was defined as 1) necrotizing soft-tissue infection requiring antifungal treatment or surgical debridement in a person injured in the tornado, 2) with illness onset on or after May 22, and 3) positive fungal culture or histopathology and genetic sequencing consistent with a Mucormycete. (cdc.gov)
• Is cancer really just a fungal infection? (drhoffman.com)
• David Phalen returns to discuss his investigations into a fungal infection of wombats in this talk Emmonsielloposis in a Fossorial Australian Marsupial. (edu.au)
• A fungal infection can lead to complications for contact lens wearers and, more seriously, patients with hip replacements. (mit.edu)
• Cross-reactivity is a known problem with the EIA antigen test, and cases known to be infected with another fungal infection should not be counted as blastomycosis cases. (cdc.gov)

Soil fungal3

• Soil fungal communities across land use types. (sisef.it)
• Belowground fungal diversity is very important in terrestrial ecosystems, however, the effect of land use change on soil fungal community is poorly understood. (sisef.it)
• It is frequently hypothesised that high soil fungal/bacterial ratios are indicative for more sustainable agricultural systems. (louisbolk.nl)

Strains1

• We isolated 23 fungal strains on inflorescences and tubers from three B. japonica plants at two locations and on one sample of the host plant ( Symplocos lancifolia , Symplocaceae). (scirp.org)

20221

• Ceballos-Escalera A, Richards J, Arias MB, Inward DJG, Vogler AP (2022) Metabarcoding of insect-associated fungal communities: a comparison of internal transcribed spacer (ITS) and large-subunit (LSU) rRNA markers. (pensoft.net)

Virulence2

• Single or double DNA methyltransferase mutants did not show altered development, virulence, or transcription of genes or TEs. (biomedcentral.com)
• In contrast, Hp1 and Dim5 mutants that are impacted in chromatin-associated processes upstream of DNA methylation are severely affected in development and virulence and display transcriptional reprogramming in specific hypervariable genomic regions (so-called adaptive genomic regions) that contain genes associated with host colonization. (biomedcentral.com)

Gene8

• Coprinopsis cinerea is easily transformed by DNA, and targeted gene disruption is achieved in some instances. (broadinstitute.org)
• A chromosomal gene was found to be involved in the production of a fungal antagonistic compound as demonstrated by the gel elution technique using antibiotic gene-specific primers. (tubitak.gov.tr)
• Quantitative monitoring of gene expression patterns with a complementary DNA microarray. (aaem.pl)
• The gene, called FLO11, is required for fungal biofilm formation. (mit.edu)
• The results revealed that the first strain exhibited a high level of 18S rRNA similarity (99%) with Fusarium verticillioides isolate (GenBank accession No. KJ207389.1), whereas, the second fungal strain of the sequenced 18S rRNA gene was identified as a close relative (99%) to Fusarium sp. (scialert.net)
• The partial or total sequencing of the 18S ribosomal DNA (rRNA) gene showed a fast technique for fungal classification. (scialert.net)
• 2011. Altenative oxidase gene (AOX I): a good DNA barcoding candidate for the genus Fusarium. (unimilitar.edu.co)
• They touted a "scalable" technology, named in shorthand FAC-MS , that can sift through important chunks of fungal DNA-what are known as gene clusters-to find molecules that might be useful for drugmaking. (xconomy.com)

Amplification6

• Loop-mediated isothermal amplification of DNA. (infowine.com)
• Thus, the plant-specific ITS primer design is required to achieve the preferential amplification of plant DNA with discrimination against fungal DNA from environmental plant samples. (academicjournals.org)
• For P. tongkangensis , the dismatch of ITS5 primer resulted in noneffective or wrong amplification when paired with either ITS4-R or ITS4, while ITS1-F2, when paired with ITS4-R and ITS4, efficiently amplified plant DNA and both plant and fungal DNAs, respectively. (academicjournals.org)
• Meanwhile, universal amplification of conserved loci from all parasites without amplifying host DNA has proven challenging. (biomedcentral.com)
• This nested approach facilitated introduction of a second restriction digestion between the first and second PCR, reducing the proportional mass of amplifiable host-derived DNA while increasing the number of PCR amplification cycles. (biomedcentral.com)
• This technology promotes the rapid amplification and detection of nucleic acid targets, DNA or RNA, while maintaining a single operating temperature of 39 - 42 o C. The AmplifyRP® XRT products achieve target sensitivity and specificity comparable to PCR, while having clear advantages over the lab-based technology. (agdia.com)

Genome6

• The ability of RIP to detect any two identical DNA segments placed at arbitrary genomic positions suggests that RIP involves an exhaustive, "genome-by-genome" homology search. (pasteur.fr)
• PPIase numbers within these fungal repertoires appears associated with genome size and orthology between repertoires was found to be low. (biomedcentral.com)
• Also, the repertoire of Cryptococcus neoformans may represent a better model fungal system within which to study the functions of the PPIases as its genome size and genetic tractability are equal to those of Saccharomyces cerevisiae , whilst its repertoires exhibits greater orthology to that of humans. (biomedcentral.com)
• The Coprinopsis cinerea sequence project is part of the Broad Institute's Fungal Genome Initiative. (broadinstitute.org)
• Genomic DNA for the genome project was provided by Patricia Pukkila at University of North Carolina. (broadinstitute.org)
• It has a long road ahead to prove that it can analyze a fungal genome and accurately predict which genes will yield potential drugs. (xconomy.com)

Biodiversity8

• Westerdijk Fungal Biodiversity and mycophenolic acid. (cdc.gov)
• PDF] Monitoring endangered freshwater biodiversity using environmental DNA. (semanticscholar.org)
• It is argued that the proposed DNA‐based approach has the potential to become the next‐generation tool for ecological studies and standardized biodiversity monitoring in a wide range of aquatic ecosystems. (semanticscholar.org)
• This current project is the first to integrate community, population and genotype-level information which will help to gain a clear picture of fungal dispersal and how it influences biodiversity. (europa.eu)
• Better understanding of the mechanisms will enhance the ability to manage and conserve the biodiversity and functions of fungal communities in forest world-wide. (europa.eu)
• It's truly uncharted territory in evolutionary biology and biodiversity of the fungal kingdom, and this is one the first attempts to generate baseline information on fungal diversity, not just for Mo'orea, but for the entire and vast Insular Oceania region. (berkeley.edu)
• Persoonia is a journal published jointly by the Naturalis Biodiversity Center and the Westerdijk Fungal Biodiversity Institute. (ingentaconnect.com)
• Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring. (unimilitar.edu.co)

Invasive1

• Surgery for aspergillosis should be considered for localized disease that is easily accessible to debridement (eg, invasive fungal sinusitis, localized cutaneous disease). (medscape.com)

Findings suggest that fungal1

• These findings suggest that fungal activity is "a new and emerging hallmark of cancer," stated study co-leader Ravid Straussman, PhD, of the Weizmann's Molecular Cell Biology Department. (medscape.com)

Ribosomal1

• BeCHAPTER cause the highly conserved ribosomal genes flanking the ITS1 marker may distort sequence clustering and similarity searches, we removed these from the dataset using Fungal ITS Extractor 1.1 (Nilsson et al. (bestpfe.com)

Genes8

• Such analyses will help to address questions such as whether the genes responsible for the multicellularity of C. cinerea are the progenitors of those in other multicellular organisms, or are innovations restricted to the fungal kingdom. (broadinstitute.org)
• Genomic analysis may reveal whether the genes responsible for the multicellularity of Coprinopsis cinerea are the progenitors of those in other multicellular organisms (e.g., nuclear receptors) or are innovations restricted to the fungal kingdom. (broadinstitute.org)
• I think their aim is to clone random genes from an animal cell, using 'quick-and-easy' DNA extracts. (hackaday.com)
• I reckon they should add more genes that you can add directly instead of waiting on stretch goals, or just adding a whole palette of genes and getting rid of the "extract your own" DNA part. (hackaday.com)
• We highlight possible strategies for unlocking lead genes for rational strain optimizations based on omics data, and discuss how targeted genetic manipulation of these candidates can be used to optimise fungal morphology for improved performance. (biomedcentral.com)
• The researchers are now using DNA arrays -- DNA chips that can analyze the activity of thousands of genes simultaneously -- to understand how FLO11 works in conjunction with other genes to bring about this effect. (mit.edu)
• Estos métodos incluyen la construcción de árboles de genes, determinación del "barcode gap", estimación de índice de clasificación genealógica, análisis de variabilidad génica, redes de haplotipos, DNA-BAR y BLOG. (unimilitar.edu.co)
• To carry out its roles, the STAT3 protein attaches to DNA and helps control the activity of particular genes. (medlineplus.gov)

Genomic6

• The Quick-DNA/RNA™ kits provide a quick method for the isolation of high quality genomic DNA and total RNA from cells, tissue, blood, biological fluids, etc. (selectscience.net)
• PCR analysis of the genomic DNA with antibiotic specific primers detected phenazine-1-carboxylic acid, 2,4-diacetylphloroglucinol, and pyoluteorin. (tubitak.gov.tr)
• As these adaptive genomic regions are largely devoid of DNA methylation and of Hp1- and Dim5-associated heterochromatin, the differential transcription is likely caused by pleiotropic effects rather than by differential DNA methylation. (biomedcentral.com)
• Cytosine methylation can occur in symmetric CG or CHG genomic contexts, or in the asymmetric CHH genomic context, where H stands for either A, C or T. In general, 5mC occurs more commonly at symmetric sites because maintenance methylation can cause methylation of daughter strands during DNA-replication, whereas asymmetric sites require de novo methylation [ 7 ]. (biomedcentral.com)
• Dim2 operates in a complex with Heterochromatin Protein-1 (Hp1) that recognizes and directs DNA methylation to genomic regions marked by tri-methylation of histone 3 lysine 9 (H3K9me3) that is deposited by the histone methyltransferase Deficient In Methylation-5 (Dim5) [ 11 , 12 ]. (biomedcentral.com)
• The cost of DNA sequencing has plummeted, and along with it, the ability to store and manage vast amounts of genomic data has increased. (xconomy.com)

Fusarium2

• While the study revealed a male preponderance with both the fungal keratitis , it further brought out that polyene compounds (natamycin and amphotericin B) and azoles were active, respectively, against Fusarium spp. (hindawi.com)
• Agdia, Inc. (Elkhart, IN) is proud to announce the commercialization of a rapid DNA-based assay, on their AmplifyRP® XRT platform, for the detection and identification of Fusarium odoratissimum Tropical Race 4 , formerly known as Fusarium oxysporum formae specialis cubense Tropical Race 4 ( Foc TR4). (agdia.com)

Diversity2

• In addition, a new high throughput sequencing technology, Restriction site Associated DNA, will be optimised to investigate genetic diversity in polypore communities. (europa.eu)
• But our analyses indicate that there is no causal link between plant and fungal diversity. (aaas.org)

Community composition4

• A preliminary experiment had been performed to assess the effect of oak leaf storage in silica gel on the fungal community composition inferred by 454 pyrosequencing. (bestpfe.com)
• Land use change mostly showed significant shifts in fungal community composition. (sisef.it)
• All these 18 types of land use change influenced fungal community composition, however, the effects on quantitative parameters were mostly inconsistent. (sisef.it)
• In a recent article published in the journal Cell, researchers found fungal deoxyribonucleic acid (DNA) and cells at low abundances across many human cancers, with cancer type-dependent variations in fungus community composition and fungal-bacteriome interactions. (news-medical.net)

Detection2

• A further finding related to the presence of fungal and bacterial DNA in human blood further suggests that measuring microbial DNA in the blood could lead to early detection of cancer, the authors noted. (medscape.com)
• CDC sequenced nearly 45,000 DNA samples by using Advanced Molecular Detection (AMD) technologies. (cdc.gov)

Shifts in fungal1

• To determine the shifts in fungal/bacterial biomass ratio as influenced by grassland management and to find relations with nitrogen leaching potential, we sampled a two-year-old field experiment at an organic experimental farm in the eastern part of The Netherlands. (louisbolk.nl)

Amplify3

• To make those identifications, Jakob uses a backpack-sized laboratory that contains all the equipment needed to extract and amplify fungal DNA, including a microscope and a Polymerase Chain Reaction (PCR) machine. (popsci.com)
• Our results showed that ITS4-R, when paired with either a universal primer ITS5 or the newly designed primer ITS1-F2, efficiently amplified DNA from environmental P. cernua samples and discriminated against parasitic fungal DNAs, while another newly designed primer ITS1-F2, when paired with either a universal primer ITS4 or ITS4-R, could not preferentially amplify plant DNA or discriminate against fungal DNA. (academicjournals.org)
• Pan-eukaryotic PCRs preferentially amplify the more abundant host DNA, obscuring parasite-derived reads following TADS. (biomedcentral.com)

Epidemiology1

• Our core group includes researchers from medical microbiology, clinical research, veterinary agricultural science, environment and life sciences, epidemiology and pharmacy and lead FungiSphere research themes in fungal biology, ecology and epidemiology, food security, pathogenesis and antimicrobial resistance. (edu.au)

Genomes2

• We used targeted sequencing to overcome limitations associated with the size of fungal genomes and their often obligately biotrophic nature. (biomedcentral.com)
• Recent advances in systems-level understanding of the filamentous lifestyle and development of sophisticated synthetic biological tools for controlled manipulation of fungal genomes now allow rational strain development programs based on data-driven decision making. (biomedcentral.com)

Found fungal1

• A separate study , also appearing in Thursday's issue of the journal Cell, found fungal involvement in gastrointestinal and lung tumors. (upi.com)

Microbiota2

• researchers should also pay attention to viruses or fungal members of the microbiota. (microbiomeinsights.com)
• Multi-kingdom microbiota analyses identify bacterial-fungal interactions and biomarkers of colorectal cancer across cohorts. (who.int)

Common fungal2

• for similar vaccines against more common fungal threats, say researchers. (sciencenews.org)
• the most common fungal cause of respiratory illness in people in the United States. (sciencenews.org)

Contact lens wearers1

• The importance of fungal keratitis gained momentum in 2005 following the outbreak of fungal keratitis among contact lens wearers in many developed countries [ 15 , 16 ]. (hindawi.com)

Composition2

• This is connected with the changes in the composition of the rice residue during the degradation and with fungal adaptation (abundance and activity) to continuous manure input. (olmdiagnostics.com)
• Fungal composition revealed in this study differed from the composition on B. harlandii or other root holoparasites with endophytic fungal ( Rafflesia cantleyi ) data. (scirp.org)

Specimens2

• Voucher specimens should be clearly labelled as such, including a permanent voucher identifier that unambiguously connects the specimen with the DNA barcode data derived from it. (wikipedia.org)
• We have really only identified and fully described 100,000 of them, though, and new DNA sequencing capabilities show us that many, many specimens in research collections are uncharacterized. (lanl.gov)

Polymerase chain re3

• Previously, diagnosis had largely been made by means of clinical presentation, although microscopic examinations (potassium hydroxide) of nail scrapings to identify fungal agents and, more recently, panel-specific polymerase chain reaction assays have been used to elucidate causative infectious agents. (japmaonline.org)
• Culture tests, sterility tests and molecular testing (polymerase chain reaction) were performed to establish the absence of contamination, live organisms and DNA material. (thieme-connect.de)
• Previously published polymerase chain reaction (PCR) primers available for amplifying the ITS region from environmental plant samples provide a high degrees of success while maintaining a broad range of compatibility difficult to discriminate against fungal DNA. (academicjournals.org)

Morphology1

• Additionally, fungal signalling cascades are introduced as critical processes that can be genetically targeted to control growth and morphology during biotechnological applications. (biomedcentral.com)

Researchers2

• Researchers at Los Alamos National Laboratory and several other institutions have characterized a sample of "mystery" fungus and found its home in the fungal tree of life. (lanl.gov)
• Annual precipitation appears to be the strongest driver of fungal distribution, according to the researchers. (aaas.org)

Communities9

• We conducted an environmental study to characterize fungal communities in classroom floor dust. (cdc.gov)
• DNA stable-isotope probing delineates carbon flows from rice residues into soil microbial communities depending on fertilization. (olmdiagnostics.com)
• The fungal communities inhabiting natural Ophiocordyceps sinensis play critical ecological roles in alpine meadow ecosystem, contribute to infect host insect, influence the occurrence of O. sinensis , and are repertoire of potential novel metabolites discovery. (biomedcentral.com)
• However, a comprehensive understanding of fungal communities of O. sinensis remain elusive. (biomedcentral.com)
• Therefore, the present study aimed to unravel fungal communities of natural O. sinensis using combination of high-throughput sequencing and culture-dependent approaches. (biomedcentral.com)
• The fungal communities in external mycelial cortices were significantly distinct from soil microhabitat. (biomedcentral.com)
• Here we analyzed bacterial, fungal and ant communities in small road medians (average area 0.0008 km 2 ) and larger parks (average area 0.64 km 2 ) across Manhattan (NYC). (nature.com)
• Studies of fungal communities using the canonical ITS barcode require corroboration across additional loci. (pensoft.net)
• Understanding complex microbial and fungal communities is progressing, Kuske noted, by allowing organisms to grow as defined mixtures. (lanl.gov)

Sequence8

• When the identity of a certain taxon (or a genetic sequence in the case of DNA barcoding) is in doubt, the original specimen can be re-examined to review and ideally solve the issue. (wikipedia.org)
• Like the flanking 18S and 28S subunits, the 5.8S subunit contains a highly conserved DNA sequence, as they code for structural parts of the ribosome, which is a key component in intracellular protein synthesis. (wikipedia.org)
• We are especially interested in understanding cytogenetic phenomena that involve sequence-specific interactions between apparently intact segments of chromosomal DNA. (pasteur.fr)
• Using a genetic process "Repeat Induced Point mutation" (RIP) in Neurospora crassa as a model system, we have discovered that DNA homology can be recognized by a cardinally new mechanism, in which long segments of double-stranded DNA are compared to one another as arrays of short interspersed sequence units. (pasteur.fr)
• The fine-scale structure of both symbionts is not sufficiently resolved by DNA sequence data. (bioone.org)
• The technology of DNA fingerprinting is based on the assumption that no two people have the same DNA sequence. (daleko.space)
• Does not show good practice through the repeating sequence of acetic acid, dna fingerprinting and its application of core loci and this introductory video superimposition technique that eventually identified. (daleko.space)
• Role of multifunctional autonomously replicating sequence binding factor 1 in the initiation of DNA replication and transcriptional control in Saccharomyces cerevisiae. (yeastgenome.org)

Phylogeny1

• 2011. DNA barcoding in the rust genus Chrysomyxa and its implications for the phylogeny of the genus. (unimilitar.edu.co)

Interactions2

• Ongoing advances in our knowledge of fungal-host interactions facilitate rational design of novel immunotherapeutics. (medscape.com)
• Thus, we have proposed that SUV39 methyltransferases can be recruited to repetitive DNA in response to homologous dsDNA-dsDNA interactions. (pasteur.fr)

Morphogenesis1

• Over 100 markers affecting mating type, hyphal growth, fruit body morphogenesis, and DNA repair have been assigned to 10 linkage groups. (broadinstitute.org)

Taxa2

• The Mo'orea BioCode project was the first all-taxa-survey of a tropical island to include DNA vouchers and other associated information. (berkeley.edu)
• The journal publishes high-quality papers elucidating known and novel fungal taxa at the DNA level, and also strives to present novel insights into evolutionary processes and relationships. (ingentaconnect.com)

Fungus5

• A higher fungus (Agaricales), C. cinerea is comprised of many cell types providing a window on the development of multicellularity within the fungal kingdom. (broadinstitute.org)
• Scientists have characterized a sample of "mystery" fungus collected in North Carolina and found its home in the fungal tree of life. (lanl.gov)
• In 2012, the first cases of a fungal disease - dubbed "ash dieback" - that was wiping out ash trees across Europe were detected in the UK, probably after the fungus hitched a ride here on infected imported plants. (thenakedscientists.com)
• Regarding the infecting fungus undergo microevolution and dna. (daleko.space)
• A synopsis of these proposals, with comments by the Secretary (T.W. May) and Deputy Secretary (S.A. Redhead) of the Fungal Nomenclature Bureau, was published in IMA Fungus on 23 May 2018 (May and Redhead 2018 ). (biomedcentral.com)

Genomics1

• Do plant genomics and terrorism cases were based on factors: a mood of amplified by size in humans be dna fingerprinting and its application in paternity? (daleko.space)

Microorganisms1

• The research team, co-led by investigators at the University of California-San Diego School of Medicine and the Weizmann Institute of Science in Rehovot, Israel, noted that little is known about the role of fungal microorganisms, or mycobiota, a part of the human microbiome, in human cancers. (upi.com)

Taxonomic1

• The fungal sample was interesting partly as it represented a major component of the observed fungal population in a pine forest and it responded positively to elevated CO 2 and nitrogen amendment treatments that mimic future environmental conditions--yet the sample's exact placement in the taxonomic order was unknown. (lanl.gov)

Biomass6

• Fungal biomass is also a valuable product for food and textile industries, and most recently as a potential material in building construction (Table 1 ). (biomedcentral.com)
• Fungal and bacterial biomass and the F/BF/B ratio were higher in grass than in grass-clover. (louisbolk.nl)
• Partial N balance was more positive at a higher N application rate and showed an inverse relationship with fungal biomass and F/BF/B ratio. (louisbolk.nl)
• We conclude that the fungal/bacterial biomass ratio quickly responded to changes in management. (louisbolk.nl)
• Grass-clover had a smaller fungal biomass and higher N leaching than grass. (louisbolk.nl)
• In general, a higher fungal biomass indicated a lower nitrogen leaching and a more negative partial N balance (or smaller N surplus), but more observations are needed to confirm the relationship between F/BF/B ratio and sustainability. (louisbolk.nl)

Yeasts1

• To date, the presumptive infectious etiologies include classically-reported fungal dermatophytes, non-dermatophyte molds, and yeasts. (japmaonline.org)

Growth3

• Prompt reduction of immunosuppression and initiation of No fungal growth was detected in a cerebrospinal antifungal therapy was required to successfully control fluid sample. (cdc.gov)
• Moving at a rate of around 6 kilometers per year from the equator towards both poles, fungal growth and pests pose a serious risk to previously safe land. (brinknews.com)
• Experiments designed to test fungal growth in microgravity are set to launch in late 2019. (eurekalert.org)

Cells2

• Those cells are designed to become porous to extracellular DNA when treated with calcium chloride and provided with a heat shock of 42°C. At a minimum I'd think they'd include a thermometer so you can control the heat shock process. (hackaday.com)
• Ionizing radiation kills cells by damaging their DNA and other essential cellular infrastructure. (eurekalert.org)

Plant4

• We used QIAGEN DNeasy 96 Plant Kit to extract the DNA (following the protocol for frozen plant tissue). (bestpfe.com)
• Member of the editorial boards for journals Fungal Ecology and Plant Pathology . (aber.ac.uk)
• To get a new estimate, a lot of work needs to be done on plant leaves, decomposing wood, sediments, and surface waters - all important reservoirs for fungal richness. (aaas.org)
• As an alternative to manual microscopic analysis of dust components, we developed a pipeline that utilizes the airborne plant environmental DNA (eDNA) in settled dust to estimate geographic origin. (mit.edu)

Biological2

• Karczmarczyk M, Bartoszcze M. DNA microarrays - new tool in the identification of biological agents. (aaem.pl)
• Biological identifications through DNA barcodes. (unimilitar.edu.co)

Biotechnology2

• Ultimately, these advances will not only expand the fungal biotechnology portfolio but will also significantly contribute to a sustainable bio-economy. (biomedcentral.com)
• Programme Support on Molecular Parasitology" to work on the project entitled "Characterization of DNA replication and non-replication function of two putative homologues of Plasmodium falciparum Origin Recognition Complex" Department of Biotechnology (DBT) (2011-2016). (jnu.ac.in)

Purification2

• it does not describe the procedure for purification of fungal DNA. (cdc.gov)
• BAC DNA Purification for Microinjection · Chromosome Counting · DNA Purification for Electroporation · DNA Purification for. (logansquareauditorium.com)