Cyclization
Stereoisomerism
Molecular Structure
Alkenes
Alkynes
Intramolecular Lyases
Palladium
Catalysis
Chemistry, Organic
Peptides, Cyclic
Cycloparaffins
Alicyclic hydrocarbons in which three or more of the carbon atoms in each molecule are united in a ring structure and each of the ring carbon atoms is joined to two hydrogen atoms or alkyl groups. The simplest members are cyclopropane (C3H6), cyclobutane (C4H8), cyclohexane (C6H12), and derivatives of these such as methylcyclohexane (C6H11CH3). (From Sax, et al., Hawley's Condensed Chemical Dictionary, 11th ed)
Lewis Acids
Rhodium
Combinatorial Chemistry Techniques
Isomerases
Cyclotides
Heterocyclic Compounds
Heterocyclic Compounds with 4 or More Rings
Amination
Carbon-Carbon Lyases
Furans
Epoxy Compounds
Polyketide Synthases
Protein Splicing
The excision of in-frame internal protein sequences (INTEINS) of a precursor protein, coupled with ligation of the flanking sequences (EXTEINS). Protein splicing is an autocatalytic reaction and results in the production of two proteins from a single primary translation product: the intein and the mature protein.
Oldenlandia
Boranes
Models, Molecular
Solid-Phase Synthesis Techniques
Techniques used to synthesize chemicals using molecular substrates that are bound to a solid surface. Typically a series of reactions are conducted on the bound substrate that results in either the covalent attachment of specific moieties or the modification of existing function groups. These techniques offer an advantage to those involving solution reactions in that the substrate compound does not have to be isolated and purified between the reaction steps.
Heterocyclic Compounds, 2-Ring
Cyclodextrins
A homologous group of cyclic GLUCANS consisting of alpha-1,4 bound glucose units obtained by the action of cyclodextrin glucanotransferase on starch or similar substrates. The enzyme is produced by certain species of Bacillus. Cyclodextrins form inclusion complexes with a wide variety of substances.
Inteins
The internal fragments of precursor proteins (INternal proTEINS) that are autocatalytically removed by PROTEIN SPLICING. The flanking fragments (EXTEINS) are ligated forming mature proteins. The nucleic acid sequences coding for inteins are considered to be MOBILE GENETIC ELEMENTS. Inteins are composed of self-splicing domains and an endonuclease domain which plays a role in the spread of the intein's genomic sequence. Mini-inteins are composed of the self-splicing domains only.
Cystine Knot Motifs
Magnetic Resonance Spectroscopy
Polyketides
Monoterpenes
Compounds with a core of 10 carbons generally formed via the mevalonate pathway from the combination of 3,3-dimethylallyl pyrophosphate and isopentenyl pyrophosphate. They are cyclized and oxidized in a variety of ways. Due to the low molecular weight many of them exist in the form of essential oils (OILS, VOLATILE).
Abies
Naphthols
Spiro Compounds
Streptomyces
Alkaloids
Cycloaddition Reaction
Molecular Sequence Data
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
Crystallography, X-Ray
Phosgene
Glycogen Debranching Enzyme System
1,4-alpha-D-Glucan-1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase/dextrin 6 alpha-D-glucanohydrolase. An enzyme system having both 4-alpha-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33) activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-1,6-glucosidase activity is deficient in glycogen storage disease type III.
Guanosine Diphosphate Sugars
Do enzymes obey the Baldwin rules? A mechanistic imperative in enzymatic cyclization reactions. (1/1346)
It is commonly assumed that enzymes have evolved to abide by the same energetic and stereoelectronic principles that govern reactions in solution. The principles formulated for organic ring-closure reactions can be used to develop a hypothesis for analysis of enzyme-catalyzed cyclization reactions. (+info)Purification and characterization of 2-deoxy-scyllo-inosose synthase derived from Bacillus circulans. A crucial carbocyclization enzyme in the biosynthesis of 2-deoxystreptamine-containing aminoglycoside antibiotics. (2/1346)
The biosynthesis of 2-deoxystreptamine, the central aglycon of a major group of clinically important aminoglycoside antibiotics, commences with the initial carbocycle formation step from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose. This crucial step is known to be catalyzed by 2-deoxy-scyllo-inosose synthase, which has not yet been characterized so far. Reported in this paper is the first purification of 2-deoxy-scyllo-inosose synthase from butirosin-producing Bacillus circulans SANK 72073 to electrophoretic homogeneity. The enzyme was isolated as a heterodimeric protein comprising from a 23 kDa- and a 42 kDa polypeptide chains. The Km of the enzyme for D-glucose-6-phosphate was estimated to be 9.0 x 10(-4) M and that for NAD+ 1.7 x 10(-4) M, kcat for D-glucose-6-phosphate being 7.3 x 10(-2) s(-1). The presence of Co2+ was essential for the enzyme activity, but Zn2+ was totally inhibitory. While the reaction mechanisms are quite similar, 2-deoxy-scyllo-inosose synthase appears to be distinct from dehydroquinate synthase in the shikimate pathway, with respect to the quaternary structure, metal ion requirement, and the kinetic parameters. (+info)Elucidating the mechanism of chain termination switching in the picromycin/methymycin polyketide synthase. (3/1346)
BACKGROUND: A single modular polyketide synthase (PKS) gene cluster is responsible for production of both the 14-membered macrolide antibiotic picromycin and the 12-membered macrolide antibiotic methymycin in Streptomyces venezuelae. Building on the success of the heterologous expression system engineered using the erythromycin PKS, we have constructed an analogous system for the picromycin/methymycin PKS. Through heterologous expression and construction of a hybrid PKS, we have examined the contributions that the PKS, its internal thioesterase domain (pikTE) and the Pik TEII thioesterase domain make in termination and cyclization of the two polyketide intermediates. RESULTS: The picromycin/methymycin PKS genes were functionally expressed in the heterologous host Streptomyces lividans, resulting in production of both narbonolide and 10-deoxymethynolide (the precursors of picromycin and methymycin, respectively). Co-expression with the Pik TEII thioesterase led to increased production levels, but did not change the ratio of the two compounds produced, leaving the function of this protein largely unknown. Fusion of the PKS thioesterase domain (pikTE) to 6-deoxyerythronolide B synthase (DEBS) resulted in formation of only 14-membered macrolactones. CONCLUSIONS: These experiments demonstrate that the PKS alone is capable of catalyzing the synthesis of both 14- and 12-membered macrolactones and favor a model by which different macrolactone rings result from a combination of the arrangement between the module 5 and module 6 subunits in the picromycin PKS complex and the selectivity of the pikTE domain. (+info)Heterologous expression, purification, reconstitution and kinetic analysis of an extended type II polyketide synthase. (4/1346)
BACKGROUND: Polyketide synthases (PKSs) are bacterial multienzyme systems that synthesize a broad range of natural products. The 'minimal' PKS consists of a ketosynthase, a chain length factor, an acyl carrier protein and a malonyl transferase. Auxiliary components (ketoreductases, aromatases and cyclases are involved in controlling the oxidation level and cyclization of the nascent polyketide chain. We describe the heterologous expression and reconstitution of several auxiliary PKS components including the actinorhodin ketoreductase (act KR), the griseusin aromatase/cyclase (gris ARO/CYC), and the tetracenomycin aromatase/cyclase (tcm ARO/CYC). RESULTS: The polyketide products of reconstituted act and tcm PKSs were identical to those identified in previous in vivo studies. Although stable protein-protein interactions were not detected between minimal and auxiliary PKS components, kinetic analysis revealed that the extended PKS comprised of the act minimal PKS, the act KR and the gris ARO/CYC had a higher turnover number than the act minimal PKS plus the act KR or the act minimal PKS alone. Adding the tcm ARO/CYC to the tcm minimal PKS also increased the overall rate. CONCLUSIONS: Until recently the principal strategy for functional analysis of PKS subunits was through heterologous expression of recombinant PKSs in Streptomyces. Our results corroborate the implicit assumption that the product isolated from whole-cell systems is the dominant product of the PKS. They also suggest that an intermediate is channeled between the various subunits, and pave the way for more detailed structural and mechanistic analysis of these multienzyme systems. (+info)Protein aging hypothesis of Alzheimer disease. (5/1346)
Alzheimer disease (AD), the most common form of aging-related neurodegenerative disorders, is associated with formation of fibrillar deposits of amyloid beta-protein (Abeta). While the direct involvement of Abeta in AD has been well documented, the relations between Abeta production, amyloid formation, and neurodegeneration remain unknown. We propose that AD is initiated by a protein aging-related structural transformation in soluble Abeta. We hypothesize that spontaneous chemical modification of aspartyl residues in Abeta to transient succinimide induces a non-native conformation in a fraction of soluble Abeta, rendering it amyloidogenic and neurotoxic. Conformationally altered Abeta is characterized by increased stability in solution and the presence of a non-native beta-turn that determines folding of Abeta in solution and the structure of Abeta subunits incorporated into amyloid fibrils. While the soluble 'non-native' Abeta is both the factor triggering the neurodegenerative cascade and the precursor of amyloid plaques, these two events result from interaction of Abeta with different sets of cellular components and need not coincide in space and time. Extensive literature data and experimental evidence are provided in support of this hypothesis. (+info)Site-directed mutagenesis of squalene-hopene cyclase: altered substrate specificity and product distribution. (6/1346)
BACKGROUND: Two regions of squalene-hopene cyclase (SHC) were examined to define roles for motifs posited to be responsible for initiation and termination of the enzyme-catalyzed polyolefinic cyclizations. Specifically, we first examined the triple mutant of the DDTAVV motif, a region deeply buried in the catalytic cavity and thought to be responsible for the initiation of squalene cyclization. Next, four mutants were prepared for Glu45, a residue close to the substrate entrance channel proposed to be involved in the termination of the cyclization of squalene. RESULTS: The DDTAVV motif in SHC was changed to DCTAEA, the corresponding conserved region of eukaryotic oxidosqualene cyclase (OSC), by the triple mutation of D377C/V380E/V381A; selected single mutants were also examined. The triple mutant showed no detectable cyclization of squalene, but effectively cyclized 2,3-oxidosqualene to give mono- and pentacyclic triterpene products. Of the Glu45 mutants, E45A and E45D showed reduced activity, E45Q showed slightly increased activity, and E45K was inactive. A normal yield of pentacyclic products was produced, but the ratio of hopene 2 to hopanol 3 was significantly changed in the less active mutants. CONCLUSIONS: Initiation and substrate selectivity may be determined by the interaction of the DDTAVV motif with the isopropylidene of squalene (for SHC) and of the DCTAEA motif with the epoxide of oxidosqualene (for OSC). This is the first report of a substrate switch determined by a central catalytic motif in a triterpenoid cyclase. At the termination of cyclization, the product ratio may be largely controlled by Glu45 at the entrance channel to the active site. (+info)Aureusidin synthase: a polyphenol oxidase homolog responsible for flower coloration. (7/1346)
Aurones are plant flavonoids that provide yellow color to the flowers of some popular ornamental plants, such as snapdragon and cosmos. In this study, we have identified an enzyme responsible for the synthesis of aurone from chalcones in the yellow snapdragon flower. The enzyme (aureusidin synthase) is a 39-kilodalton, copper-containing glycoprotein catalyzing the hydroxylation and/or oxidative cyclization of the precursor chalcones, 2',4',6',4-tetrahydroxychalcone and 2',4',6',3,4-pentahydroxychalcone. The complementary DNA encoding aureusidin synthase is expressed in the petals of aurone-containing varieties. DNA sequence analysis revealed that aureusidin synthase belongs to the plant polyphenol oxidase family, providing an unequivocal example of the function of the polyphenol oxidase homolog in plants, i.e., flower coloration. (+info)Intramolecular proton transfer in the cyclization of geranylgeranyl diphosphate to the taxadiene precursor of taxol catalyzed by recombinant taxadiene synthase. (8/1346)
BACKGROUND: The committed step in the biosynthesis of the anticancer drug taxol in yew (Taxus) species is the cyclization of geranylgeranyl diphosphate to taxa-4(5),11(12)-diene. The enzyme taxadiene synthase catalyzes this complex olefin cation cyclization cascade involving the formation of three rings and three stereogenic centers. RESULTS: Recombinant taxadiene synthase was incubated with specifically deuterated substrates, and the mechanism of cyclization was probed using MS and NMR analyses of the products to define the crucial hydrogen migration and terminating deprotonation steps. The electrophilic cyclization involves the ionization of the diphosphate with closure of the A-ring, followed by a unique intramolecular transfer of the C11 proton to the re-face of C7 to promote closure of the B/C-ring juncture, and cascade termination by proton elimination from the beta-face of C5. CONCLUSIONS: These findings provide insight into the molecular architecture of the first dedicated step of taxol biosynthesis that creates the taxane carbon skeleton, and they have broad implications for the general mechanistic capability of the large family of terpenoid cyclization enzymes. (+info)An arene-alkene photocycloaddition-radical cyclization cascade: The first synthesis of cis,cis,cis,trans-[5.5.5.5]-fenestranes<...
Investigation of the nitronate Nazarov cyclization
DocMe.su: cyclization
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Sumanirole - Wikipedia
Enediyne
For Bergman cyclization to occur, the epoxide must be removed. Myers-Saito cyclization is another triggering mechanism by which ... The diradicals generated by Bergman and Myers-Saito cyclization are highly reactive. The cyclization of the enediyne functional ... Bergman cyclization restructures the enediyne ring into two smaller rings. One electron from each of the enediyne triple bonds ... "Bergman Cyclization". www.organic-chemistry.org. Retrieved 2018-05-05. Smith AL, Nicolaou KC (May 1996). "The enediyne ...
Pauson-Khand reaction
In addition to using a rhodium catalyst, this synthesis features an intramolecular cyclization that results in the normal 5- ... Shambayani, Soroosh; Crowe, William E.; Schreiber, Stuart L. (1990-01-01). "N-oxide promoted pauson-khand cyclizations at room ... Negishi, Eiichi; Holmes, Steven J.; Tour, James M.; Miller, Joseph A. (1985-04-01). "Metal promoted cyclization. 7. Zirconium- ... "Asymmetric Pauson-Khand Cyclization: A Formal Total Synthesis of Natural Brefeldin A". The Journal of Organic Chemistry. 60 (21 ...
Hydroquinone
"Cyclization of Acetylenic Compounds". Angewandte Chemie International Edition in English. 8 (10): 727-733. doi:10.1002/anie. ...
Cycloalkene
Cyclization reactions, or intramolecular addition reactions, can be used to form cycloalkenes. These reactions primarily form ... Intramolecular Addition (Cyclization) Reactions". Chemistry LibreTexts. 2015-01-12. Retrieved 2022-11-17. "ELECTROCYCLIC ...
Propyne
"Cyclization of Acetylenic Compounds". Angewandte Chemie International Edition in English. 8 (10): 727-733. doi:10.1002/anie. ...
Flavagline
Trost, B. M.; Greenspan, P. D.; Yang, B. V.; Saulnier, M. G. (1990). "An unusual oxidative cyclization. A synthesis and ...
Acetylene
doi:10.1016/S0040-4020(01)92395-6. Reppe, Walter; Kutepow, N; Magin, A (1969). "Cyclization of Acetylenic Compounds". ...
Suritozole
Cyclization to Suritozole (6). GABAA receptor negative allosteric modulator GABAA receptor § Ligands Miller JA, Dudley MW, ...
2-Butyne
Reppe, Walter; Kutepow, N; Magin, A (1969). "Cyclization of Acetylenic Compounds". Angewandte Chemie International Edition in ...
Rocaglamide
Trost BM, Greenspan PD, Yang BV, Saulnier MG (November 1990). "An unusual oxidative cyclization. A synthesis and absolute ...
Scott E. Denmark
Denmark, S. E.; Jones, T. K. (1982-05-01). "Silicon-directed Nazarov cyclization". Journal of the American Chemical Society. ... From Polyene Cyclizations to Origin of Biomolecular Homochirality. ETH Zurich (Switzerland). Retrieved 2019-11-16. ... where his laboratory's early work focused on investigation of the Nazarov cyclization reaction and Claisen rearrangement. This ...
Biosynthesis
This causes cyclization and gives rise to (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate. 4-hydroxy-tetrahydrodipicolinate ... this prevents spontaneous cyclization. The enzyme N-acetylglutamate synthase (glutamate N-acetyltransferase) is responsible for ...
Biomimetic synthesis
A more recent example is E.J. Corey's carbenium-mediated cyclization of an engineered linear polyene to provide a tetracyclic ... The key step in Heathcock's synthetic route involves a cyclization of acyclic dialdehydes A or B to form proto-daphniphylline. ... Eschenmoser A, Felix D, Gut M, Meier J, Stadler P (1959). "Some aspects of acid-catalysed cyclizations of terpenoid polyenes". ... Stork G, Burgstrahler AW (1955). "The stereochemistry of polyene cyclization". J. Am. Chem. Soc. 77 (19): 5068-77. doi:10.1021/ ...
Cyclopentyne
The importance of cyclization effects". International Journal of Quantum Chemistry. doi:10.1002/qua.25489. (Chemical pages ...
Thiol-ene reaction
The use of thiyl radicals as initiators of cyclization has been employed in the synthesis of a number of natural products, ... This section examines intramolecular thiol-ene cyclization reactions, which yields a mixture of 5-exo and 6-endo products in ... The conditions under which these cyclization reactions occur follow Baldwin's rules for ring closure. Given the reversibility ... Lynch, Dylan M.; Scanlan, Eoin M. (2020-07-07). "Thiyl Radicals: Versatile Reactive Intermediates for Cyclization of ...
Oxidosqualene cyclase
This cyclization is one of the most complex known enzyme functions and is highly selective. In the enzyme's active site, a ... Oxidosqualene cyclases (OSC) are enzymes involved in cyclization reactions of 2,3-oxidosqualene to form sterols or triterpenes ... Stork, Gilbert; Burgstahler, A. W. (1955-10-01). "The Stereochemistry of Polyene Cyclization". Journal of the American Chemical ...
Pictet-Spengler reaction
B. E. Maryanoff; H.-C. Zhang; J. H. Cohen; I. J. Turchi; C. A. Maryanoff (2004). "Cyclizations of N-acyliminium ions". Chem. ... Larghi, E. L.; Kaufman, T. S. (2006). "The oxa-Pictet-Spengler Cyclization. Synthesis of Isochromanes and Related Pyran-Type ... Instead of catalyzing the Pictet-Spengler cyclization with strong acid, one can acylate the iminium ion forming the ...
Methanesulfonyl chloride
Chamberlin, A. R.; Nguyen, H. D.; Chung, J. Y. L. (1984). "Cationic cyclization of ketene dithioacetals. A general synthesis of ...
Combes quinoline synthesis
Johnson, W.S.; Mathews, F.J. (1944). "Cyclization studies in the benzoquinoline series". J. Am. Chem. Soc. 66 (2): 210-215. doi ... Johnson, W.S.; Mathews, F.J. (1944). "Cyclization studies in the benzoquinoline series". J. Am. Chem. Soc. 66 (2): 210-215. doi ...
Cope rearrangement
Tang, Man-Cheng; Zou, Yi; Watanabe, Kenji; Walsh, Christopher T.; Tang, Yi (2017-04-26). "Oxidative Cyclization in Natural ...
Indenofluorene
Youngs, Wiley J.; Djebli, Abdellah.; Tessier, Claire A. (1991-07-01). "Lithium-induced cyclization of tribenzo cyclotriynes". ...
Azide-alkyne Huisgen cycloaddition
At this point cyclization takes place. This is followed by protonation; the source of proton being the hydrogen which was ...
Peptide synthesis
Off-resin cyclization is a solid-phase synthesis of key intermediates, followed by the key cyclization in solution phase, the ... A variety of cyclization reagents can be used such as HBTU/HOBt/DIEA, PyBop/DIEA, PyClock/DIEA. Head-to-tail peptides can be ... Once cyclization has taken place, the peptide is cleaved from resin by acidolysis and purified. The strategy for the solid- ... The deprotection of the C-terminus at some suitable point allows on-resin cyclization by amide bond formation with the ...
Cre-Lox recombination
"Cyclization recombinase [Escherichia coli] - Protein - NCBI". Sternberg N, Hamilton D (August 1981). "Bacteriophage P1 site- ... The Cre protein (encoded by the locus originally named as "Causes recombination", with "Cyclization recombinase" being found in ...
Metal-centered cycloaddition reactions
Padwa, Albert; Kassir, Jamal M.; Xu, Simon L. (1 March 1997). "Cyclization Reactions of Rhodium Carbene Complexes. Effect of ...
Intramolecular Heck reaction
5-Exo cyclization, which establishes a five-membered ring with an exocyclic alkene, is the most facile cyclization mode in ... 7) Endo cyclization is observed most often when small or large rings are involved. For instance, 5-endo cyclization is ... 12) The closest competing method to IMHR is radical cyclization. Radical cyclizations are often reductive, which can cause ... 6) 6-Exo cyclization is also common. The high stability of Heck reaction catalysts permits the synthesis of highly strained ...
Enone-alkene cycloadditions
the Intramolecular Cyclization of Carvone to Carvonecamphor". J. Am. Chem. Soc. 79 (17): 4741. doi:10.1021/ja01574a042. Cookson ...
Nifurquinazol
... cyclization then affords the observed product (4). The amide function is then converted to the iminochloride with phosphorus ...
Thiophene
Another method is the Volhard-Erdmann cyclization. Thiophene is produced on a modest scale of around 2,000 metric tons per year ...
Thiol-yne reaction
The radical intermediate can engage in secondary reactions such as cyclisation. With diaddition the 1,2-disulfide or the 1,1- ... "Sulfanyl radical mediated cyclization of aminyl radicals". Tetrahedron Letters. 39 (49): 9077. doi:10.1016/S0040-4039(98)01998- ...
Extended π-Participation in Biomimetic Cyclization of Squalene Derivatives
... Stanko Borčić ; Department of Chemistry, Faculty of ... "Extended π-Participation in Biomimetic Cyclization of Squalene Derivatives." Croatica Chemica Acta, vol. 69, br. 4, 1996, str. ... "Extended π-Participation in Biomimetic Cyclization of Squalene Derivatives." Croatica Chemica Acta 69, br. 4 (1996): 1347-1359 ... 1996). Extended π-Participation in Biomimetic Cyclization of Squalene Derivatives, Croatica Chemica Acta, 69(4), str. 1347- ...
All Cyclisation articles | Chemistry World
Synthesis of coumarins via PIDA/I2-mediated oxidative cyclization of substituted phenylacrylic acids - RSC Advances (RSC...
cyclization type flag in simple cycpep predict | RosettaCommons
While I explicitely asked for a terminal disulfide cyclization (using the flag -cyclic_peptide:cyclization_type terminal_ ... As I said in my comment, disulfide cyclization did not work for me in v3.8 but did for weekly release 2017.52. You may give it ... The reason I want 3.8 is because I want to use the disulfide cyclization type. Is this a database issue? Thanks for your help! ... Hi Thanks Florent - however, the issue is arising here even without the -cyclization_type flags. Unfortuntately, I have no ...
Microwave Chemistry Highlights: Tandem Cyclization/Claisen Rearrangements, Primary Thioamides, Aminoquinazolines, 4...
EVIDENCE FOR A RADICAL PROCESS IN THE DARK CYCLIZATION REACTION OF ALIPHATIC ALCOHOLS WITH SILVER OXIDE AND BROMINE. - Nokia...
Choreographing cyclizations and fragmentations in radical cascades
Cyclization of 2′-Nitrobiphenyl-2-carboxylic Acids - ScienceOpen
1Cyclization of 2-Alk-1-ynylbenzoic Acids. *. pp. 1Cyclization of 1-(2-Hydroxyphenyl)alkane-1,3-diones with Sulfonic Acid ... 1Cyclization of Carbon Dioxide and Two Alkynes. *. pp. 1Rhodium-Catalyzed Carbonylative Cyclization of (2-Hydroxyphenyl)alkynes ... 1Cyclization of Ester Enolates with Unsaturated Thiocarbonyl Compounds. *. pp. 1Cyclization of 9,10-Dioxo-9,10- ... 1Cyclizations Utilizing Carbon Dioxide. *. pp. 1With Formation of the 4a-10 and 9-9a, the 8a-9 and 10-10a, the 4a-10 and 8a-9, ...
cyclization of glutamine involved in intein-mediated protein splicing - Ontology Report - Rat Genome Database
BJOC - A diastereoselective approach to axially chiral biaryls via electrochemically enabled cyclization cascade
A diastereoselective approach to axially chiral biaryls via electrochemically enabled cyclization cascade ... A diastereoselective approach to axially chiral biaryls via electrochemically enabled cyclization cascade. Hong Yan, Zhong-Yi ... Rhodium-catalyzed intramolecular reductive aldol-type cyclization: Application for the synthesis of a chiral necic acid lactone ...
Development of Catalytic Cyclization/Coupling Reactions for New Chemical Space - Penn State
Development of Catalytic Cyclization/Coupling Reactions for New Chemical Space. *Giri, Ramesh (PI) ... Beta-hydride elimination is a competing process in cyclization/coupling reactions that has significantly limited the scope of ... To further broaden the scope of cyclization/coupling strategies towards accessing a broader range of complex molecules, this ... Ramesh Giri and his research team are developing catalysts to advance cyclization/coupling strategies for alkene ...
Structure of the Product from a Novel Cyclization Reaction Involving a C(6)-Substituted Uridine Analog
Iodoheptene Radical Cyclisation Exo
Palladium-mediated cyclizations of gamma-oxoallenes: synthesis of structurally modified nucleic acids
Reversible cyclisation of a sulfonated arylazo compound containing an o-acetylamino substituent - Strathprints
Gibson, D.I. and Parkinson, J.A. and Jones, A.C. and Ebenezer, W.J. and Hutchings, M.G. (2008) Reversible cyclisation of a ... Reversible cyclisation of a sulfonated arylazo compound containing an o-acetylamino substituent ... arylazo, benzo-1, 2, 4-triazine, cyclisation, photoisomerism, Chemistry, Biochemistry, Organic Chemistry, Drug Discovery. ...
A Chiral Tetrahydro-Gamma-Pyrannonecarboxylate Ester for Asymmetric Nazarov Cyclization - Kent Academic Repository
Raw data for new compounds described in the paper "Catalytic enantioselective arylative cyclizations of alkynyl 1,3-diketones...
Raw data for new compounds described in the paper "Catalytic enantioselective arylative cyclizations of alkynyl 1,3-diketones ... Raw data for new compounds described in the paper "Catalytic enantioselective arylative cyclizations of alkynyl 1,3-diketones ... Raw NMR data for new compounds described in the paper: "Catalytic enantioselective arylative cyclizations of alkynyl 1,3- ...
The synthesis of heteroaromatic prostacyclin analogues via keto alkyne cyclisation
Enzymatic Cyclization to Labdanes and Related Diterpenoid Natural Products - Reuben Peters
Enzymatic Cyclization to Labdanes and Related Diterpenoid Natural Products Peters, Reuben John Iowa State University, Ames, IA ... We propose to investigate these consecutive cyclization reactions as a first step towards our long-term goal of engineering ... To characterize class II cyclization more basic mechanistic enzymology studies are proposed to identify the determinants for ... and will have a broader impact in further increasing our understanding and use of terpenoid enzymatic cyclization more ...
A formylation-cyclization method of synthesis of cycloalkenones from unsaturated ketones - Publications of the IAS Fellows
Interplay of ortho- with spiro-cyclisation during iminyl radical closures onto arenes and heteroarenes
Cyclisation energetics were investigated by DFT computations which gave insights into factors influencing the two cyclisation ... Interplay of ortho- with spiro-cyclisation during iminyl radical closures onto arenes and heteroarenes. ... Walton , J C & McBurney , R T 2013 , Interplay of ortho- with spiro-cyclisation during iminyl radical closures onto arenes ... For benzofuran and benzothiophene acceptors, spiro-cyclisation predominated at low temperatures but thermodynamic control ...
Intramolecular cyclization of alkynoic acid catalyzed by Na-salt-modified Au nanoparticles supported on metal oxides<...
Intramolecular cyclization of alkynoic acid catalyzed by Na-salt-modified Au nanoparticles supported on metal oxides」の研究トピックを掘り ... Intramolecular cyclization of alkynoic acid catalyzed by Na-salt-modified Au nanoparticles supported on metal oxides. Applied ... Intramolecular cyclization of alkynoic acid catalyzed by Na-salt-modified Au nanoparticles supported on metal oxides. In: ... Intramolecular cyclization of alkynoic acid catalyzed by Na-salt-modified Au nanoparticles supported on metal oxides. / Huang, ...
Triruthenium dodecacarbonyl-catalized reductive carbonylation of nitroarenes: cyclization, carbon monoxide insertion and...
The cyclization to indole occurred also at room temperature under irradiation or with zinc. The use of cis-cyclooctene as the ... The cyclization to indole occurred also at room temperature under irradiation or with zinc. The use of cis-cyclooctene as the ... Nitrones were formed in this reaction and were suggested to be intermediate in certain cyclizations. Force-field calculations ... Nitrones were formed in this reaction and were suggested to be intermediate in certain cyclizations. Force-field calculations ...
Intramolecular cyclization of benzyl-substituted cyclopentadienyl titanum dichlorides promoted by boron tribromide<...
Qian, Y, Huang, J, Ding, K, Zhang, Y, Huang, Q, Chen, XP, Chan, ASC & Wong, WT 2002, Intramolecular cyclization of benzyl- ... Intramolecular cyclization of benzyl-substituted cyclopentadienyl titanum dichlorides promoted by boron tribromide. Journal of ... Intramolecular cyclization of benzyl-substituted cyclopentadienyl titanum dichlorides promoted by boron tribromide. In: Journal ... Intramolecular cyclization of benzyl-substituted cyclopentadienyl titanum dichlorides promoted by boron tribromide. / Qian, ...
Ruthenium-catalyzed aerobic oxidative cyclization of aromatic and heteroaromatic nitriles with alkynes: A new route to...
Reddy MC, Manikandan R, Jeganmohan M. Ruthenium-catalyzed aerobic oxidative cyclization of aromatic and heteroaromatic nitriles ... Reddy, M. C., Manikandan, R., & Jeganmohan, M. (2013). Ruthenium-catalyzed aerobic oxidative cyclization of aromatic and ... title = "Ruthenium-catalyzed aerobic oxidative cyclization of aromatic and heteroaromatic nitriles with alkynes: A new route to ... Ruthenium-catalyzed aerobic oxidative cyclization of aromatic and heteroaromatic nitriles with alkynes: A new route to ...
Cyclizations | Pepscan
CLIPS cyclization (mono- and bicyclic peptides). Cys-Cys cyclization is the result from formation of a disulfide (S-S) bond ... An important challenge with head-to-tail cyclizations is the fact that the peptide cyclization is often slow due to entropic ... Most often backbone-amide cyclized peptides are prepared via head-to-tail cyclization or side-chain-to-side-chain cyclization. ... Effective head-to-tail cyclization therefore requires thorough expertise with respect to the optimal cyclization reagent and ...
"Gold Redox Catalysis for Cyclization/Arylation of Allylic Oximes: Synt" by Abiola Azeez Jimoh, Seyedmorteza Hosseyni et al.
... redox catalysis toward allylic oxime cyclization/aryl coupling. Functional isoxazolines were prepared with good to excellent ... Base-assisted diazonium activation has been employed to promote gold(I)/(III) redox catalysis toward allylic oxime cyclization/ ... Gold Redox Catalysis for Cyclization/Arylation of Allylic Oximes: Synthesis of Isoxazoline Derivatives ... "Gold Redox Catalysis for Cyclization/Arylation of Allylic Oximes: Synthesis of Isoxazoline Derivatives" (2019). Chemistry ...
Intramolecular cyclization assistance for fast degradation of ornithine-based poly(ester amide)s<...
Intramolecular cyclization assistance for fast degradation of ornithine-based poly(ester amide)s. / De Gracia Lux, Caroline; ... Intramolecular cyclization assistance for fast degradation of ornithine-based poly(ester amide)s. In: Journal of Polymer ... De Gracia Lux C, Olejniczak J, Fomina N, Viger ML, Almutairi A. Intramolecular cyclization assistance for fast degradation of ... De Gracia Lux, C., Olejniczak, J., Fomina, N., Viger, M. L., & Almutairi, A. (2013). Intramolecular cyclization assistance for ...
Paul O'Maille
... suppress or reactivate cyclization. Remarkably, this epistatic network of equivalent residues also controls cyclization in a ... Emergence of terpene cyclization in Artemisia annua. Paul OMaille February 3, 2015. ... Here we report the first discovery of an epistatic network of residues that controls the onset of terpene cyclization in ... To analyze the molecular mechanisms of emergence of terpene cyclization, we have carried out in-depth examination of mutational ...
Intramolecular8
- The base-catalyzed intramolecular cyclization of appropriately substituted 4-alkyn-1-ols, followed by in situ Claisen rearrangement was investigated by Ovaska and co-workers ( Synlett 2004 , 2579. (organic-chemistry.org)
- Intramolecular cyclization of α,α-alkyl-ortho-methoxybenzylcyclopentadienyl titanium complexes to form titanoxacycle complexes promoted by BBr3has been studied. (edu.hk)
- Zirconia-supported sodium-salt-modified Au(0) nanoparticles (NPs) (Na-Au/ZrO 2 ) catalyst was prepared, and it was stable and recyclable in the intramolecular cyclization of alkynoic acids. (elsevier.com)
- Inspired by the spontaneous cyclization of ornithine in peptides, polyesters containing protected ornithine (Orn) side chains along the backbone were synthesized and shown to degrade rapidly upon deprotection through intramolecular cyclization. (elsevier.com)
- GPC confirmed that 1-Boc degrades over 40 times faster than 2-Boc following deprotection into the designed intramolecular cyclization products. (elsevier.com)
- In addition, cyclization of the title compounds by intramolecular coupling of the amine and ester has led to the analogous bicyclic thiazin-3(2H)-ones. (elsevier.com)
- This step results from an intramolecular cyclization reaction in which the carbonyl (C=O) group that was a part of the original isocyanate group (-N=C=O), is effectively extracted to yield perimidone and the amine corresponding to the original isocyanate species. (cdc.gov)
- ED3A can react spontaneously to ketopiperazinediacetate (KPDA) by intramolecular cyclisation [Ternes et al. (europa.eu)
Reaction9
- Nitrones were formed in this reaction and were suggested to be intermediate in certain cyclizations. (unimi.it)
- Moreover, detailed kinetic studies revealed that the cyclization was a zero-order reaction with respect to substrate concentration, and the rate-determining step of the reaction is presumed to be protodeauration. (elsevier.com)
- A Bergman cyclization landscape that is influenced by the bonding of metal to an enediyne ligand but whose reaction barrier is ultimately dominated by the coordinating ability of the accompanying anion. (semanticscholar.org)
- Subsequent cyclization of these compounds by reaction between the amine and activated methylene has led to various ester-substituted thiazine- and thiadiazine-based bicyclic derivatives. (elsevier.com)
- 3-allyl-3-methylthio-𝛽-lactams, which are synthesized through a Lewis acid mediated C-3 alkylation of the trans -3-chloro-3-methylthio-𝛽-lactams, undergo a facile intrasulfenyl cyclization reaction in the presence of halogens like bromine and iodine to give spiro 𝛽-lactams in good yield. (ias.ac.in)
- Ugi Four-Component Reaction Based on the in situ Capture of Amines and Subsequent Modification Tandem Cyclization Reaction: "One-Pot" Synthesis of Six- and Seven-Membered Heterocycles[J]. Chinese Journal of Organic Chemistry , 2021, 41(6): 2374-2383. (sioc-journal.cn)
- Structure analysis of product was conducted by GC-MS. Kinetic of the cyclisation-acetylation reaction was analyzed according to the Langmuir-Hinshelwood mechanism. (ugm.ac.id)
- Rate constant of cyclisation-acetylation reaction catalyzed by Zn 2+ -Natzeo was 30.964-47.619 mmol(min. (ugm.ac.id)
- In Chapter 3, a tandem palladium-catalyzed deallylation/cyclization reaction was designed to occur under a mild condition: weakly acidic (acetic acid) and room temperature, which enables the synthesis of perylene monoanhydrides with many labile R groups for the first time. (cuny.edu)
Synthesis2
- Wenkert, Ernest (1980) A formylation-cyclization method of synthesis of cycloalkenones from unsaturated ketones Journal of Organic Chemistry, 45 (6). (ias.ac.in)
- Stephens, CE & Walter Sowell, J 1998, ' Synthesis and Cyclization Reactions of 2-Amino-3-[(methoxycarbonyl)methylsulfonyl]pyrroles and Thiophene ', Journal of Heterocyclic Chemistry , vol. 35, no. 4, pp. 933-938. (elsevier.com)
Chemistry1
- β-Nitrostyrenes as Electrophiles in Parham Cyclization Chemistry. (tcnj.edu)
Oxidative cyclization1
- Reddy, MC, Manikandan, R & Jeganmohan, M 2013, ' Ruthenium-catalyzed aerobic oxidative cyclization of aromatic and heteroaromatic nitriles with alkynes: A new route to isoquinolones ', Chemical Communications , vol. 49, no. 54, pp. 6060-6062. (bgu.ac.il)
Esters1
- While the most frequently formed pattern for cyclization is the amide bond, side-chain cyclizations can consist of lactones (cyclic esters), thioethers, disulfide bridges, thioesters, and β-lactams (amide bonds). (eurogentec.com)
Reactions4
- Dr. Ramesh Giri and his research team are developing catalysts to advance cyclization/coupling strategies for alkene difunctionalization reactions. (elsevier.com)
- Beta-hydride elimination is a competing process in cyclization/coupling reactions that has significantly limited the scope of these transformations. (elsevier.com)
- We propose to investigate these consecutive cyclization reactions as a first step towards our long-term goal of engineering terpenoid natural product biosynthesis for pharmaceutical purposes. (grantome.com)
- Thus, the proposed studies will elucidate the structure-function relationships underlying the consecutive class I I/class I cyclization reactions in labdane-related diterpene biosynthesis, and will have a broader impact in further increasing our understanding and use of terpenoid enzymatic cyclization more generally. (grantome.com)
Derivatives4
- 1996). 'Extended π-Participation in Biomimetic Cyclization of Squalene Derivatives', Croatica Chemica Acta , 69(4), str. (srce.hr)
- Borčić S, Humski K, Kronja O, Malnar I. Extended π-Participation in Biomimetic Cyclization of Squalene Derivatives. (srce.hr)
- penicillin and derivatives) and thus, lactam ring cyclization represents a potential antimicrobial drug development opportunity. (eurogentec.com)
- Methods: The 2,3-dihydro-1,3,4-oxadiazole derivatives 4a-h were synthesized by cyclization of N'-(substituted-benzylidene) isonicotinohydrazide 3a-e in refluxing acetic anhydride. (who.int)
Peptides4
- Constraining peptides via cyclization is a frequently used strategy for the mimicry of (protein) secondary structures (e.g. peptide loops) or for the creation of peptides with enhanced conformational stability (compared to their linear analogs). (pepscan.com)
- Amide bond cyclization is frequently used for cyclic peptides. (pepscan.com)
- Most often backbone-amide cyclized peptides are prepared via head-to-tail cyclization or side-chain-to-side-chain cyclization. (pepscan.com)
- Efficient Enzymatic Cyclization of Disulfide-Rich Peptides by Using Peptide Ligases. (cipps.org.au)
Reductive1
- Triruthenium dodecacarbonyl-catalized reductive carbonylation of nitroarenes: cyclization, carbon monoxide insertion and reduction : An overview / A. Bassoli, S. Cenini, F. Farina, M. Orlandi, B. Rindone. (unimi.it)
Amide2
- While I explicitely asked for a terminal disulfide cyclization (using the flag -cyclic_peptide:cyclization_type terminal_disulfide), the output models are cyclized with a mainchain bond (the default n_to_c_amide_bond). (rosettacommons.org)
- Similar to Cys-Cys cyclization, some synthetic challenges are encountered with amide cyclizations. (pepscan.com)
Disulfide2
- The reason I want 3.8 is because I want to use the disulfide cyclization type. (rosettacommons.org)
- Cys-Cys cyclization is the result from formation of a disulfide (S-S) bond between the thiol side chains of two cysteine residues in a peptide. (pepscan.com)
Aryl1
- Base-assisted diazonium activation has been employed to promote gold(I)/(III) redox catalysis toward allylic oxime cyclization/aryl coupling. (usf.edu)
Tandem2
- The tandem cyclization-Claisen rearrangements were best carried out in DMF or phenetole as solvent in the presence of 10 mol% MeLi base. (organic-chemistry.org)
- This is followed by a discussion of a tandem enamine formation cyclisation sequence using allenic substrates for the preparation of substituted cyclopentanones. (ucl.ac.uk)
Radical1
- II (same R). The 3-exo trig radical cyclization, i.e., homoallylic (cyclopropyl)methyl radical cyclization, of I and II gave tricyclooctanes III (same R). (iisc.ac.in)
Terpene1
- To analyze the molecular mechanisms of emergence of terpene cyclization, we have carried out in-depth examination of mutational space around (E)-β-farnesene synthase, an Artemisia annua enzyme which catalyzes production of a linear hydrocarbon chain. (sri.com)
Catalysts1
- Substrates containing dienophiles bearing two electron-withdrawing groups underwent uncatalysed cyclisation readily, whereas unactivated substrates were unreactive even in the presence of catalysts. (hud.ac.uk)
Benzofuran2
- For benzofuran and benzothiophene acceptors, spiro-cyclisation predominated at low temperatures but thermodynamic control ensured ortho-products, benzofuro- or benzothieno-isoquinolines, formed at higher temperatures. (st-andrews.ac.uk)
- Etherification with chloroacetic acid followed by cyclisation gives the heterocycle benzofuran. (chemeurope.com)
Substrates1
- To further broaden the scope of cyclization/coupling strategies towards accessing a broader range of complex molecules, this research program is also testing new enamine and silyl enol ether substrates, as well as exploring linearizable substrates with cleavable tethers. (elsevier.com)
Deprotection1
- Versatile options enabling orthogonal deprotection for modifications like branching and cyclization. (cem.com)
Sequence1
- C) Nucleotide alignment of cyclization sequence (D) Nucleotide alignment of upstream AUG region. (cdc.gov)
Stability1
- Most frequently used cyclization conferring greater stability. (eurogentec.com)
Method1
- Synthetically, this is the most frequently used peptide cyclization method. (pepscan.com)
Products1
- Small amounts of six-membered cyclization products such as acridane dimers, phenothiazine, quinoxalines were also found. (unimi.it)
Main2
- To note, I also had to modify slightly the file main/source/src/basic/options/options_rosetta.py prior to compiling as the routine simple_cycpep_predict routine used to complain (ERROR: Option matching -cyclic_peptide:cyclization_type not found in command line top-level context). (rosettacommons.org)
- The main problem to be prevented is that of dimerization, but this can be minimized by performing the cyclization under 'high dilution' conditions. (pepscan.com)
Product1
- To characterize class II cyclization more basic mechanistic enzymology studies are proposed to identify the determinants for catalysis, as well as initial investigations of product specificity. (grantome.com)
Challenge1
- An important challenge with head-to-tail cyclizations is the fact that the peptide cyclization is often slow due to entropic reasons. (pepscan.com)
Gave2
- Cyclisation energetics were investigated by DFT computations which gave insights into factors influencing the two cyclisation modes. (st-andrews.ac.uk)
- and bromination of S)-carvone gave 7-bromo-4,7-dimethyl[2.2.2]bicyclooct-5-en-2-one derivs. (iisc.ac.in)