Beggiatoa
Thiotrichaceae
Sulfides
Phototrophic Processes
Processes by which phototrophic organisms use sunlight as their primary energy source. Contrasts with chemotrophic processes which do not depend on light and function in deriving energy from exogenous chemical sources. Photoautotrophy (or photolithotrophy) is the ability to use sunlight as energy to fix inorganic nutrients to be used for other organic requirements. Photoautotrophs include all GREEN PLANTS; GREEN ALGAE; CYANOBACTERIA; and green and PURPLE SULFUR BACTERIA. Photoheterotrophs or photoorganotrophs require a supply of organic nutrients for their organic requirements but use sunlight as their primary energy source; examples include certain PURPLE NONSULFUR BACTERIA. Depending on environmental conditions some organisms can switch between different nutritional modes (AUTOTROPHY; HETEROTROPHY; chemotrophy; or phototrophy) to utilize different sources to meet their nutrients and energy requirements.
Polyphosphates
Geologic Sediments
A mass of organic or inorganic solid fragmented material, or the solid fragment itself, that comes from the weathering of rock and is carried by, suspended in, or dropped by air, water, or ice. It refers also to a mass that is accumulated by any other natural agent and that forms in layers on the earth's surface, such as sand, gravel, silt, mud, fill, or loess. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed, p1689)
Nitrates
Sulfur
Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea. (1/15)
Submarine mud volcanoes are formed by expulsions of mud, fluids, and gases from deeply buried subsurface sources. They are highly reduced benthic habitats and often associated with intensive methane seepage. In this study, the microbial diversity and community structure in methane-rich sediments of the Haakon Mosby Mud Volcano (HMMV) were investigated by comparative sequence analysis of 16S rRNA genes and fluorescence in situ hybridization. In the active volcano center, which has a diameter of about 500 m, the main methane-consuming process was bacterial aerobic oxidation. In this zone, aerobic methanotrophs belonging to three bacterial clades closely affiliated with Methylobacter and Methylophaga species accounted for 56%+/-8% of total cells. In sediments below Beggiatoa mats encircling the center of the HMMV, methanotrophic archaea of the ANME-3 clade dominated the zone of anaerobic methane oxidation. ANME-3 archaea form cell aggregates mostly associated with sulfate-reducing bacteria of the Desulfobulbus (DBB) branch. These ANME-3/DBB aggregates were highly abundant and accounted for up to 94%+/-2% of total microbial biomass at 2 to 3 cm below the surface. ANME-3/DBB aggregates could be further enriched by flow cytometry to identify their phylogenetic relationships. At the outer rim of the mud volcano, the seafloor was colonized by tubeworms (Siboglinidae, formerly known as Pogonophora). Here, both aerobic and anaerobic methane oxidizers were found, however, in lower abundances. The level of microbial diversity at this site was higher than that at the central and Beggiatoa species-covered part of the HMMV. Analysis of methyl-coenzyme M-reductase alpha subunit (mcrA) genes showed a strong dominance of a novel lineage, mcrA group f, which could be assigned to ANME-3 archaea. Our results further support the hypothesis of Niemann et al. (54), that high methane availability and different fluid flow regimens at the HMMV provide distinct niches for aerobic and anaerobic methanotrophs. (+info)Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. (2/15)
Marine sediments are frequently covered by mats of the filamentous Beggiatoa and other large nitrate-storing bacteria that oxidize hydrogen sulfide using either oxygen or nitrate, which they store in intracellular vacuoles. Despite their conspicuous metabolic properties and their biogeochemical importance, little is known about their genetic repertoire because of the lack of pure cultures. Here, we present a unique approach to access the genome of single filaments of Beggiatoa by combining whole genome amplification, pyrosequencing, and optical genome mapping. Sequence assemblies were incomplete and yielded average contig sizes of approximately 1 kb. Pathways for sulfur oxidation, nitrate and oxygen respiration, and CO2 fixation confirm the chemolithoautotrophic physiology of Beggiatoa. In addition, Beggiatoa potentially utilize inorganic sulfur compounds and dimethyl sulfoxide as electron acceptors. We propose a mechanism of vacuolar nitrate accumulation that is linked to proton translocation by vacuolar-type ATPases. Comparative genomics indicates substantial horizontal gene transfer of storage, metabolic, and gliding capabilities between Beggiatoa and cyanobacteria. These capabilities enable Beggiatoa to overcome non-overlapping availabilities of electron donors and acceptors while gliding between oxic and sulfidic zones. The first look into the genome of these filamentous sulfur-oxidizing bacteria substantially deepens the understanding of their evolution and their contribution to sulfur and nitrogen cycling in marine sediments. (+info)Physiological adaptation of a nitrate-storing Beggiatoa sp. to diel cycling in a phototrophic hypersaline mat. (3/15)
The aim of this study was to investigate the supposed vertical diel migration and the accompanying physiology of Beggiatoa bacteria from hypersaline microbial mats. We combined microsensor, stable-isotope, and molecular techniques to clarify the phylogeny and physiology of the most dominant species inhabiting mats of the natural hypersaline Lake Chiprana, Spain. The most dominant morphotype had a filament diameter of 6 to 8 microm and a length varying from 1 to >10 mm. Phylogenetic analysis by 16S rRNA gene comparison revealed that this type appeared to be most closely related (91% sequence identity) to the narrow (4-microm diameter) nonvacuolated marine strain MS-81-6. Stable-isotope analysis showed that the Lake Chiprana species could store nitrate intracellularly to 40 mM. The presence of large intracellular vacuoles was confirmed by fluorescein isothiocyanate staining and subsequent confocal microscopy. In illuminated mats, their highest abundance was found at a depth of 8 mm, where oxygen and sulfide co-occurred. However, in the dark, the highest Beggiatoa densities occurred at 7 mm, and the whole population was present in the anoxic zone of the mat. Our findings suggest that hypersaline Beggiatoa bacteria oxidize sulfide with oxygen under light conditions and with internally stored nitrate under dark conditions. It was concluded that nitrate storage by Beggiatoa is an optimal strategy to both occupy the suboxic zones in sulfidic sediments and survive the dark periods in phototrophic mats. (+info)Video-supported analysis of Beggiatoa filament growth, breakage, and movement. (4/15)
(+info)Methylotrophy in freshwater Beggiatoa alba strains. (5/15)
(+info)Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep. (6/15)
(+info)Sulfide induces phosphate release from polyphosphate in cultures of a marine Beggiatoa strain. (7/15)
(+info)High rates of denitrification and nitrate removal in cold seep sediments. (8/15)
(+info)
Beggiatoa - Wikipedia
Endosymbioses between bacteria and deep-sea siboglinid tubeworms from an Arctic cold seep (Haakon Mosby Mud Volcano, Barents...
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Phylogenetic Affinity of a Wide, Vacuolate, Nitrate-AccumulatingBeggiatoa sp. from Monterey Canyon, California, withThioploca...
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Habitat
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Beggiatoa
... is almost benthic, it can be found in marine (Beggiatoa sp. MS-81-6 and MS-81-1c) or freshwater (Beggiatoa alba) ... Two species of Beggiatoa have been formally described: the type species Beggiatoa alba and Beggiatoa leptomitoformis, the ... According to NCBI database only two species of Beggiatoa spp. have been validly published: Beggiatoa alba, and Beggiatoa ... Because of the lack of pure culture, little is known about the genetic of Beggiatoa. Beggiatoa alba show a GC content between ...
Beggiatoa leptomitoformis
Parte, A.C. "Beggiatoa". LPSN. "Beggiatoa leptomitoformis". www.uniprot.org. Parker, Charles Thomas; Garrity, George M (2016). ... Beggiatoa leptomitoformis is a chemolithoautotrophic bacterium from the genus of Beggiatoa which has been isolated from ... Type strain of Beggiatoa leptomitoformis at BacDive - the Bacterial Diversity Metadatabase v t e (Articles with short ... Dubinina, G; Savvichev, A; Orlova, M; Gavrish, E; Verbarg, S; Grabovich, M (February 2017). "Beggiatoa leptomitoformis sp. nov ...
Lake Hévíz
and Beggiatoa sp. from a depth of 1.5 m to the opening of the springcave. These together with the bacterium species play an ...
Microbiology of oxygen minimum zones
and Beggiatoa spp. which reduce NO3− and/or NO2− to NH4+ using reduced sulfur. Denitrification and anammox account for about 30 ...
Thiothrix
... is a genus of filamentous sulfur-oxidizing bacteria, related to the genera Beggiatoa and Thioploca. They are usually ... Larkin, J M; Strohl, W R (1 October 1983). "Beggiatoa, Thiothrix, and Thioploca". Annual Review of Microbiology. 37 (1): 341- ...
Algae
Some filamentous bacteria (e.g., Beggiatoa) were originally seen as algae. Furthermore, groups like the apicomplexans are also ...
Black band disease
Also present are gliding Beggiatoa filaments (1-4 mm wide) that are non-pigmented but contain highly refractive intracellular ... Sulfide-oxidizing bacteria, dominated by Beggiatoa spp., are present in well-developed bands and exhibit visible vertical ... migrations within the band matrix (Richardson, 1996; Viehman and Richardson, 2006). When present on the band surface Beggiatoa ...
Microbial metabolism
... some Beggiatoa, some Nitrobacter spp., Wolinella (with H 2 as reducing equivalent donor), some Knallgas-bacteria, some sulfate- ... A classic example of a sulfur-oxidizing bacterium is Beggiatoa, a microbe originally described by Sergei Winogradsky, one of ...
Microbial oxidation of sulfur
Among the heterotrophic SOB are included species of Beggiatoa that can grow mixotrophically, using sulfide to obtain energy ( ... Burton SD, Morita RY (December 1964). "Effect of Catalase and Cultural Conditions on Growth of Beggiatoa". Journal of ...
Dissimilatory nitrate reduction to ammonium
For example, benthic sulfur bacteria in genera such as Beggiatoa and Thioploca inhabit anoxic sediments on continental shelves ... "Biological and chemical sulfide oxidation in a Beggiatoa inhabited marine sediment". The ISME Journal. 1 (4): 341-353. doi: ...
Cyanobacteria
Formerly, some bacteria, like Beggiatoa, were thought to be colorless Cyanobacteria. The currently accepted taxonomy is based ...
Robert George Everitt Murray
Maier, S.; Murray, R. G. E. (1965). "The Fine Structure of Thioploca Ingrica and a Comparison with Beggiatoa". Canadian Journal ...
Cold seep
... nonpigmented mats were found to be an autotrophic sulfur bacteria Beggiatoa species, and the orange mats possessed an ... "Spatial Structure and Activity of Sedimentary Microbial Communities Underlying a Beggiatoa spp. Mat in a Gulf of Mexico ... of the genera Thioploca and Beggiatoa, and of "macrobacteria" including a diversity of phenotypes), protists (ciliates, ...
Macromonas bipunctata
Hinck, Susanne (2008). "Eco-physiological, chemotactic and taxonomic characterization of hypersaline Beggiatoa originating from ...
1887 in science
Sergei Winogradsky discovers the first known form of lithotrophy during his research with Beggiatoa. The Petri dish is created ...
Hydrothermal vent microbial communities
Other common species are Thiothrix and Beggiatoa, which is of particular importance because of its ability to fix nitrogen. ... Sulfur oxidizing species include and the genera of Thiomicrospira, Halothiobacillus, Beggiatoa, Persephonella, and Sulfurimonas ... Beggiatoa, zetaproteobacterium, and gammaproteobacterial endosymbionts of tubeworms, bivalves, and gastropods. The Reductive ... major symbionts Allochromatium Thiomicrospira Thioalkalivibrio Methylococcaceae Beggiatoa Thioploca Zetaproteobacteria ...
Sergei Winogradsky
He reported that Beggiatoa oxidized hydrogen sulfide (H2S) as an energy source and formed intracellular sulfur droplets. This ... Winogradsky discovered the first known form of lithotrophy during his research with Beggiatoa in 1887. ... in Beggiatoa). His work on the Nitrogen cycle including The identification of the obligate anaerobe Clostridium pasteurianum is ...
Thiomargarita namibiensis
Thioploca and Beggiatoa cells are much smaller and grow tightly stacked on each other in long filaments. Their shape is ... They were actually looking for other recently found sulfide-eating marine bacteria, Thioploca and Beggiatoa. They ended up with ... Although Thiomargarita is closely related to Thioploca and Beggiatoa in function, their structures proved to be vastly ...
Marine prokaryotes
Large vacuoles are found in three genera of filamentous sulfur bacteria, the Thioploca, Beggiatoa and Thiomargarita. The ...
Thioploca
Occasionally they are also found as free-living trichomes, making them morphologically similar to the genus Beggiatoa. As ... they are often mistaken as a species of Beggiatoa. The four species are differentiated on the basis of their trichome diameters ...
Optogenetics
... of the soil bacterium Beggiatoa". The Journal of Biological Chemistry. 286 (2): 1181-1188. doi:10.1074/jbc.M110.185496. PMC ...
Photoactivated adenylyl cyclase
Small but potent PACs were identified in the genome of the bacteria Beggiatoa (bPAC) and Oscillatoria acuminata (OaPAC). While ... of the Soil Bacterium Beggiatoa". Journal of Biological Chemistry. 286 (2): 1181-1188. doi:10.1074/jbc.M110.185496. ISSN 0021- ...
Marine biogeochemical cycles
In modern oceans, Hydrogenovibrio crunogenus, Halothiobacillus, and Beggiatoa are primary sulfur oxidizing bacteria, and form ...
Pfisters Mühle
" ("Fäulnisbewohner"), and beggiatoa alba. The latter stems from "the outlets of the sugar factory" ("den Ausflüssen der ...
Guaymas Basin
Beggiatoa and other microbial mats, and thermophilic microbes that can withstand hydrothermal temperatures (here up to __ °C). ...
Gammaproteobacteria
... and the most important among them are Beggiatoa, Thioploca and Thiomargarita; besides, large amounts of hydrogen sulfide are ...
Winogradsky column
... and Beggiatoa, as well as many other species of bacteria, cyanobacteria, and algae. The column provides numerous gradients, ...
Beebe Hydrothermal Vent Field
Exposed rocks have shown filamentous bacteria and orange sediments around the field, where microorganisms such as Beggiatoa are ...
Timeline of Russian innovation
... and Beggiatoa, as well as many other species of bacteria, cyanobacteria, and algae. 1888s Three-phase electric power The three- ...
Microbiology
... whose studies on algae and photosynthetic bacteria led him to describe several bacteria including Bacillus and Beggiatoa. Cohn ...
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Richard Roberts - Publications
TREE NUMBER DESCRIPTOR
CDD Conserved Protein Domain Family: Arylsulfotrans
... ltaaqrKFNQGFGMLLAIDAEGEVIWYYRFDSRIS 205 Beggiatoa sp. PS Q12SB0 285 VQLISqNTTTSAGGLTFLSS--------------------------------TDAETAR ... WYATGRPqgpaensipietMTLHHE 261 Beggiatoa sp. PS Q12SB0 333 Saa---------ptIKSLGQGQLLLLLS--------RE-ARIIDMTGA--TISS-FSLPA--------- ... gLFVLDNGTYQAHPFTPA 441 Beggiatoa sp. PS Q12SB0 486 NT--GANSTl-QDKFFTL----E--------------SGSWQANQHAPMFTSVg--------dLLIYDNRNEAALP ... ASKKIQWILGE 389 Beggiatoa sp. PS Q12SB0 431 ---------------------ALSQRVLDNGDIDWSHSNALAYLGHDDSILLSSRSQsWVVNIDk----ASGNIVWIFGD ...
MeSH Browser
Beggiatoa Preferred Term Term UI T529922. Date01/08/2003. LexicalTag NON. ThesaurusID NLM (2004). ... Beggiatoa Preferred Concept UI. M0444476. Registry Number. txid1021. Scope Note. A genus of colorless, filamentous bacteria in ... Beggiatoa. Tree Number(s). B03.440.400.645.100. B03.660.250.770.100. Unique ID. D053524. RDF Unique Identifier. http://id.nlm. ...
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MeSH Browser
Beggiatoa Preferred Term Term UI T529922. Date01/08/2003. LexicalTag NON. ThesaurusID NLM (2004). ... Beggiatoa Preferred Concept UI. M0444476. Registry Number. txid1021. Scope Note. A genus of colorless, filamentous bacteria in ... Beggiatoa. Tree Number(s). B03.440.400.645.100. B03.660.250.770.100. Unique ID. D053524. RDF Unique Identifier. http://id.nlm. ...
Find Research outputs
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Small Things Considered: A Lakeside Tale
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From the Eleventh Report of the Illinois Industrial University
The species of Beggiatoa live for the most part in thermal 54 sulphur springs where they decompose, the dissolved sulphur com- ... The genus Beggiatoa is easily recognized by the chalk-white slime-forming, actively moving filaments, whose joints cannot as a ... BEGGIATOA, Tkevisan. Filaments very long but thicker than those of Leptothrix, usually obscurely jointed, quite rigid hut ... 145 - Filaments thicker Beggiatoa. 145 11. Filaments short with few spirals or a single curve, rigid Spirillum. 150 - Filaments ...
4.2 Proteobacteria - Microbiology: Canadian Edition
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Code System Concept
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Watanabe, S., Hayashi, K., Toh, K., Kim, H. J., Liu, X., Chaya, H., Fukushima, S., Katsushima, K., Kondo, Y., Uchida, S., Ogura, S., Nomoto, T., Takemoto, H., Cabral, H., Kinoh, H., Tanaka, H. Y., Kano, M. R., Matsumoto, Y., Fukuhara, H., Uchida, S. & 5 others, Nangaku, M., Osada, K., Nishiyama, N., Miyata, K. & Kataoka, K., Apr 24 2019, In: Nature communications. 10, 1, p. 1894 1894.. Research output: Contribution to journal › Article › peer-review ...
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Sulfur2
- The divers found Beggiatoa, sulfur dependent bacteria, growing directly above the vents. (interridge.org)
- The biomass of all six stream biofilms was dominated by filamentous γ-proteobacteria with Beggiatoa-like and/or Thiothrix-like cells containing abundant sulfur inclusions. (usf.edu)
Bacterium2
- The sulfide- oxidizing bacterium Beggiatoa sp. (elsevier.com)
- The bacterium - Beggiatoa alba was the most abundant and frequent taxon particularly in the wet months and strongly indicates high levels of bio-degradable waste contamination. (trjfas.org)
Bacteria1
- Beggiatoa-type bacteria? (aphotomarine.com)
Family1
- Intracellular protease, PfpI family n=1 Tax=Beggiatoa sp. (uma.es)
Marine1
- Nitrogen fixation and nitrate utilization by marine and freshwater Beggiatoa. (whoi.edu)
Examples1
- The common examples are Beggiatoa and Thiothrix . (botanystudies.com)