Archaeoglobus fulgidus
Archaeoglobus
Archaeoglobales
RNA, Archaeal
Gene Expression Regulation, Archaeal
Nonheme Iron Proteins
Methanococcus
Hydrogensulfite Reductase
Archaea
One of the three domains of life (the others being BACTERIA and Eukarya), formerly called Archaebacteria under the taxon Bacteria, but now considered separate and distinct. They are characterized by: (1) the presence of characteristic tRNAs and ribosomal RNAs; (2) the absence of peptidoglycan cell walls; (3) the presence of ether-linked lipids built from branched-chain subunits; and (4) their occurrence in unusual habitats. While archaea resemble bacteria in morphology and genomic organization, they resemble eukarya in their method of genomic replication. The domain contains at least four kingdoms: CRENARCHAEOTA; EURYARCHAEOTA; NANOARCHAEOTA; and KORARCHAEOTA.
Oxidoreductases Acting on Sulfur Group Donors
Crystallography, X-Ray
Molecular Sequence Data
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
Amino Acid Sequence
Models, Molecular
Enzyme Stability
Sequence Homology, Amino Acid
Crystallization
Sulfur
Sequence Alignment
The arrangement of two or more amino acid or base sequences from an organism or organisms in such a way as to align areas of the sequences sharing common properties. The degree of relatedness or homology between the sequences is predicted computationally or statistically based on weights assigned to the elements aligned between the sequences. This in turn can serve as a potential indicator of the genetic relatedness between the organisms.
Protein Structure, Tertiary
The level of protein structure in which combinations of secondary protein structures (alpha helices, beta sheets, loop regions, and motifs) pack together to form folded shapes called domains. Disulfide bridges between cysteines in two different parts of the polypeptide chain along with other interactions between the chains play a role in the formation and stabilization of tertiary structure. Small proteins usually consist of only one domain but larger proteins may contain a number of domains connected by segments of polypeptide chain which lack regular secondary structure.
Cation Transport Proteins
Hydroxymethyl and Formyl Transferases
Euryarchaeota
Phosphoribosylglycinamide Formyltransferase
Transferases
Transferases are enzymes transferring a group, for example, the methyl group or a glycosyl group, from one compound (generally regarded as donor) to another compound (generally regarded as acceptor). The classification is based on the scheme "donor:acceptor group transferase". (Enzyme Nomenclature, 1992) EC 2.
Carbon-Nitrogen Ligases with Glutamine as Amide-N-Donor
Desulfovibrio vulgaris
Halobacteriales
Adenoma, Acidophil
A benign tumor, usually found in the anterior lobe of the pituitary gland, whose cells stain with acid dyes. Such pituitary tumors may give rise to excessive secretion of growth hormone, resulting in gigantism or acromegaly. A specific type of acidophil adenoma may give rise to nonpuerperal galactorrhea. (Dorland, 27th ed)
Psychrobacter
Acidithiobacillus
Alkalies
Desulfovibrio
Sulfur-Reducing Bacteria
Adenosine Phosphosulfate
Encyclopedias as Topic
Hot Springs
Hydrothermal Vents
Thermococcus
Fatigue
Databases, Protein
Sequence Analysis, Protein
Systems Integration
Internet
Proteins
Linear POLYPEPTIDES that are synthesized on RIBOSOMES and may be further modified, crosslinked, cleaved, or assembled into complex proteins with several subunits. The specific sequence of AMINO ACIDS determines the shape the polypeptide will take, during PROTEIN FOLDING, and the function of the protein.
Identification of the Archaeoglobus fulgidus endonuclease III DNA interaction surface using heteronuclear NMR methods. (1/193)
BACKGROUND: Endonuclease III is the prototype for a family of DNA-repair enzymes that recognize and remove damaged and mismatched bases from DNA via cleavage of the N-glycosidic bond. Crystal structures for endonuclease III, which removes damaged pyrimidines, and MutY, which removes mismatched adenines, show a highly conserved structure. Although there are several models for DNA binding by this family of enzymes, no experimental structures with bound DNA exist for any member of the family. RESULTS: Nuclear magnetic resonance (NMR) spectroscopy chemical-shift perturbation of backbone nuclei (1H, 15N, 13CO) has been used to map the DNA-binding site on Archaeoglobus fulgidus endonuclease III. The experimentally determined interaction surface includes five structural elements: the helix-hairpin-helix (HhH) motif, the iron-sulfur cluster loop (FCL) motif, the pseudo helix-hairpin-helix motif, the helix B-helix C loop, and helix H. The elements form a continuous surface that spans the active site of the enzyme. CONCLUSIONS: The enzyme-DNA interaction surface for endonuclease III contains five elements of the protein structure and suggests that DNA damage recognition may require several specific interactions between the enzyme and the DNA substrate. Because the target DNA used in this study contained a generic apurinic/apyrimidinic (AP) site, the binding interactions we observed for A. fulgidus endonuclease III should apply to all members of the endonuclease III family and several interactions could apply to the endonuclease III/AlkA (3-methyladenine DNA glycosylase) superfamily. (+info)Identification and characterization of a novel ferric reductase from the hyperthermophilic Archaeon Archaeoglobus fulgidus. (2/193)
Archaeoglobus fulgidus, a hyperthermophilic sulfate-reducing Archaeon, contains high Fe(3+)-EDTA reductase activity in its soluble protein fraction. The corresponding enzyme, which constitutes about 0.75% of the soluble protein, was purified 175-fold to homogeneity. Based on SDS-polyacrylamide gel electrophoresis, the ferric reductase consists of a single subunit with a M(r) of 18,000. The M(r) of the native enzyme was determined by size exclusion chromatography to be 40,000 suggesting that the native ferric reductase is a homodimer. The enzyme uses both NADH and NADPH as electron donors to reduce Fe(3+)-EDTA. Other Fe(3+) complexes and dichlorophenolindophenol serve as alternative electron acceptors, but uncomplexed Fe(3+) is not utilized. The purified enzyme strictly requires FMN or FAD as a catalytic intermediate for Fe(3+) reduction. Ferric reductase also reduces FMN and FAD, but not riboflavin, with NAD(P)H which classifies the enzyme as a NAD(P)H:flavin oxidoreductase. The enzyme exhibits a temperature optimum of 88 degrees C. When incubated at 85 degrees C, the enzyme activity half-life was 2 h. N-terminal sequence analysis of the purified ferric reductase resulted in the identification of the hypothetical gene, AF0830, of the A. fulgidus genomic sequence. The A. fulgidus ferric reductase shares amino acid sequence similarity with a family of NAD(P)H:FMN oxidoreductases but not with any ferric reductases suggesting that the A. fulgidus ferric reductase is a novel enzyme. (+info)The Archaeoglobus fulgidus D-lactate dehydrogenase is a Zn(2+) flavoprotein. (3/193)
Archaeoglobus fulgidus, a hyperthermophilic, archaeal sulfate reducer, is one of the few organisms that can utilize D-lactate as a sole source for both carbon and electrons. The A. fulgidus open reading frame, AF0394, which is predicted to encode a D-(-)-lactate dehydrogenase (Dld), was cloned, and its product was expressed in Escherichia coli as a fusion with the maltose binding protein (MBP). The 90-kDa MBP-Dld fusion protein was more efficiently expressed in E. coli when coexpressed with the E. coli dnaY gene, encoding the arginyl tRNA for the codons AGA and AGG. When cleaved from the fusion protein by treatment with factor Xa, the recombinant Dld (rDld) has an apparent molecular mass of 50 kDa, similar to that of the native A. fulgidus Dld enzyme. Both the purified MBP-Dld fusion protein and its rDld cleavage fragment have lactate dehydrogenase activities specific for D-lactate, are stable at 80 degrees C, and retain activity after exposure to oxygen. The flavin cofactor FAD, which binds rDld apoprotein with a 1:1 stoichiometry, is essential for activity. (+info)Cellulosome-like sequences in Archaeoglobus fulgidus: an enigmatic vestige of cohesin and dockerin domains. (4/193)
The distribution of cellulosomal cohesin domains among the sequences currently compiled in various sequence databases was investigated. Two cohesin domains were detected in two consecutive open reading frames (ORFs) of the recently sequenced genome of the archaeon Archaeoglobus fulgidus. Otherwise, no cohesin-like sequence could be detected in organisms other than those of the Eubacteria. One of the A. fulgidus cohesin-containing ORFs also harbored a dockerin domain, but the additional modular portions of both genes are undefined, both with respect to sequence homology and function. It is currently unclear what function(s) the putative cohesin and dockerin-containing proteins play in the life cycle of this organism. In particular, since A. fulgidus contains no known glycosyl hydrolase gene, the presence of a cellulosome can be excluded. The results suggest that cohesin and dockerin signature sequences cannot be used alone for the definitive identification of cellulosomes in genomes. (+info)Assembly of archaeal signal recognition particle from recombinant components. (5/193)
Signal recognition particle (SRP) takes part in protein targeting and secretion in all organisms. Searches for components of archaeal SRP in primary databases and completed genomes indicated that archaea possess only homologs of SRP RNA, and proteins SRP19 and SRP54. A recombinant SRP was assembled from cloned, expressed and purified components of the hyperthermophilic archaeon Archaeoglobus fulgidus. Recombinant Af-SRP54 associated with the signal peptide of bovine pre-prolactin translated in vitro. As in mammalian SRP, Af-SRP54 binding to Af-SRP RNA required protein Af-SRP19, although notable amounts bound in absence of Af-SRP19. Archaeoglobus fulgidus SRP proteins also bound to full-length SRP RNA of the archaeon Methanococcus jannaschii, to eukaryotic human SRP RNA, and to truncated versions which corresponded to the large domain of SRP. Dependence on SRP19 was most pronounced with components from the same species. Reconstitutions with heterologous components revealed a significant potential of human SRP proteins to bind to archaeal SRP RNAs. Surprisingly, M.jannaschii SRP RNA bound to human SRP54M quantitatively in the absence of SRP19. This is the first report of reconstitution of an archaeal SRP from recombinantly expressed purified components. The results highlight structural and functional conservation of SRP assembly between archaea and eucarya. (+info)Homology modeling and identification of serine 160 as nucleophile of the active site in a thermostable carboxylesterase from the archaeon Archaeoglobus fulgidus. (6/193)
The hyperthermophilic Archaeon Archaeoglobus fulgidus has a gene (AF1763) which encodes a thermostable carboxylesterase belonging to the hormone-sensitive lipase (HSL)-like group of the esterase/lipase family. Based on secondary structure predictions and a secondary structure-driven multiple sequence alignment with remote homologous proteins of known three-dimensional structure, we previously hypothesized for this enzyme the alpha/beta-hydrolase fold typical of several lipases and esterases and identified Ser160, Asp 255 and His285 as the putative members of the catalytic triad. In this paper we report the building of a 3D model for this enzyme based on the structure of the homologous brefeldin A esterase from Bacillus subtilis whose structure has been recently elucidated. The model reveals the topological organization of the fold corroborating our predictions. As regarding the active-site residues, Ser160, Asp255 and His285 are located close each other at hydrogen bond distances. The catalytic role of Ser160 as the nucleophilic member of the triad is demonstrated by the [(3)H]diisopropylphosphofluoridate (DFP) active-site labeling and sequencing of a radioactive peptide containing the signature sequence GDSAGG. (+info)Uracil-DNA glycosylase in the extreme thermophile Archaeoglobus fulgidus. (7/193)
Uracil-DNA glycosylase (UDG) is an essential enzyme for maintaining genomic integrity. Here we describe a UDG from the extreme thermophile Archaeoglobus fulgidus. The enzyme is a member of a new class of enzymes found in prokaryotes that is distinct from the UDG enzyme found in Escherichia coli, eukaryotes, and DNA-containing viruses. The A. fulgidus UDG is extremely thermostable, maintaining full activity after heating for 1.5 h at 95 degrees C. The protein is capable of removing uracil from double-stranded DNA containing either a U/A or U/G base pair as well as from single-stranded DNA. This enzyme is product-inhibited by both uracil and apurinic/apyrimidinic sites. The A. fulgidus UDG has a high degree of similarity at the primary amino acid sequence level to the enzyme found in Thermotoga maritima, a thermophilic eubacteria, and suggests a conserved mechanism of UDG-initiated base excision repair in archaea and thermophilic eubacteria. (+info)The Archean sulfur cycle and the early history of atmospheric oxygen. (8/193)
The isotope record of sedimentary sulfides can help resolve the history of oxygen accumulation into the atmosphere. We measured sulfur isotopic fractionation during microbial sulfate reduction up to 88 degrees C and show how sulfate reduction rate influences the preservation of biological fractionations in sediments. The sedimentary sulfur isotope record suggests low concentrations of seawater sulfate and atmospheric oxygen in the early Archean (3.4 to 2.8 billion years ago). The accumulation of oxygen and sulfate began later, in the early Proterozoic (2.5 to 0.54 billion years ago). (+info)
1S3Q | CRYSTAL STRUCTURES OF A NOVEL OPEN PORE FERRITIN FROM THE HYPERTHERMOPHILIC ARCHAEON ARCHAEOGLOBUS FULGIDUS | 1S3Q D |...
1S3Q | CRYSTAL STRUCTURES OF A NOVEL OPEN PORE FERRITIN FROM THE HYPERTHERMOPHILIC ARCHAEON ARCHAEOGLOBUS FULGIDUS | 1S3Q B |...
RCSB PDB - 1S3Q: Crystal structures of a novel open pore ferritin from the hyperthermophilic Archaeon Archaeoglobus fulgidus
Structure of the Dissimilatory Sulfite Reductase from the Hyperthermophilic Archaeon Archaeoglobus fulgidus
Adenylylsulphate reductase from the sulphate-reducing archaeon Archaeoglobus fulgidus: cloning and characterization of the...
KEGG ENZYME: 1.16.1.10
Sequence Similarity
- 1LJO: CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM2) FROM ARCHAEOGLOBUS FULGIDUS AT 1.95A...
KEGG ENZYME: 1.1.99.6
Archaeoglobus - microbewiki
Annotation rule MF 01259
Archaeoglobus veneficus Huber & al., 1998
Unusual Ammonium Transporters - Transport across and into membranes
SMART: PINc domain annotation
The Briarfield Chronicles: The glutamate switch provides a link between ATPase activity and ligand binding in AAA+ proteins...
3gde.1 | SWISS-MODEL Template Library
Ağır və ya orta dərəcədə ağır hemofiliyalı B-də yetkinlərdə AMT-060 Gen terapiyası B 5 ilədək qanaxma və IX faktor istehlakında...
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Three-dimensional structure of AprB from A. fulgidus (A | Open-i
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Hyperthermophile
Archaeoglobus fulgidus. *Methanococcus jannaschii. *Aeropyrum pernix. *Sulfolobus. *Methanopyrus kandleri strain 116, an ...
Perchlorate
... and the archaeon Archaeoglobus fulgidus. With the exception of A. fulgidus, all known microbes that grow via perchlorate ...
Sulfite reductase
"Reaction cycle of the dissimilatory sulfite reductase from Archaeoglobus fulgidus". Biochemistry. 49 (41): 8912-21. doi:10.1021 ...
List of sequenced archaeal genomes
November 1997). "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus". ... June 2010). "Complete genome sequence of Archaeoglobus profundus type strain (AV18)". Standards in Genomic Sciences. 2 (3): 327 ...
Cobalamin biosynthesis
... from Archaeoglobus Fulgidus". Journal of Structural and Functional Genomics. 7 (1): 37-50. doi:10.1007/s10969-006-9008-x. PMID ...
HgcG RNA
hgcG is significantly similar to a region of the Archaeoglobus fulgidus genome. The genes were named hgcA through hgcG ("high ...
NAD+ kinase
The structure of the NADK from the archaean Archaeoglobus fulgidus has been determined. In humans, the genes NADK and MNADK ... "Crystal structures of an NAD kinase from Archaeoglobus fulgidus in complex with ATP, NAD, or NADP". Journal of Molecular ...
F420H2DH family
The sulfate-reducing Archaeoglobus fulgidus (and several other archaea) also have this enzyme. Reduction of 2-hydroxyphenazine ...
Superoxide reductase
"Oxygen detoxification in the strict anaerobic archaeon Archaeoglobus fulgidus: superoxide scavenging by neelaredoxin". Mol. ...
Adenylyl-sulfate reductase
February 2002). "Structure of adenylylsulfate reductase from the hyperthermophilic Archaeoglobus fulgidus at 1.6-A resolution ...
Formylmethanofuran dehydrogenase
Formyl-MFR dehydrogenase was also isolated from Methanosarcina barkeri and Archaeoglobus fulgidus cell extracts. Molybdenum- ...
Radical SAM
Hyperthermophilic sulfate-reducing archaen Archaeoglobus fulgidus has been recently reported to enable anaerobic oxidation of ... Archaeoglobus fulgidus". The ISME Journal. 8 (11): 2153-66. doi:10.1038/ismej.2014.58. PMC 4992073. PMID 24763368. Benjdia A, ... PflD is reported to be responsible for the capacity of A. fulgidus to grow on a wide range of unsaturated carbons and fatty ...
CRISPR
showed evidence that CRISPR repeat regions from the genome of Archaeoglobus fulgidus were transcribed into long RNA molecules ... 2002). "Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus". Proc Natl Acad ...
Iron dependent repressor
Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own ...
Formylmethanofuran-tetrahydromethanopterin N-formyltransferase
Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a ...
Histone H2A
"The crystal structure of AF1521 a protein from Archaeoglobus fulgidus with homology to the non-histone domain of macroH2A". ...
ATP-binding cassette transporter
... from Archaeoglobus fulgidus. Atomic-resolution structures of three other bacterial importers, E. coli BtuCD, E. coli maltose ...
UbiD protein domain
... with two members in Archaeoglobus fulgidus. They are related to UbiD, a 3-octaprenyl-4-hydroxybenzoate carboxy-lyase from ...
O-phospho-L-seryl-tRNA:Cys-tRNA synthase
Cys-tRNA synthase from Archaeoglobus fulgidus". Journal of Molecular Biology. 370 (1): 128-41. doi:10.1016/j.jmb.2007.04.050. ...
Coenzyme F420-0:L-glutamate ligase
... gamma-glutamyl ligase from Archaeoglobus fulgidus -- a member of a new family of non-ribosomal peptide synthases". Journal of ...
P-type ATPase
In the Archaeoglobus fulgidus CopA (TC# 3.A.3.5.7), invariant residues in helixes 6, 7 and 8 form two transmembrane metal ... The delivery of Cu+ by Archaeoglobus fulgidus Cu+-chaperone, CopZ (see TC# 3.A.3.5.7), to the corresponding Cu+-ATPase, CopA ( ... 2008) have determined structures of two constructs of the Cu (CopA) pump from Archaeoglobus fulgidus by cryoelectron microscopy ...
ABC proteini - Википедија, слободна енциклопедија
... iz Archaeoglobus fulgidus.[24] Strukture atomske-rezolucije tri druga bakterijska importera, E. coli BtuCD,[21] E. coli ...
List of MeSH codes (B07)
... archaeoglobus MeSH B07.200.080.080.100 - archaeoglobus fulgidus MeSH B07.200.400.400 - halobacteriaceae MeSH B07.200.400.400. ...
O-phospho-L-serine-tRNA ligase
O-phospho-L-seryl-tRNACys In organisms like Archaeoglobus fulgidus, this enzyme ligates O-phosphoserine to tRNACys. Fukunaga R ...
Horizontal gene transfer in evolution
He describes the microorganism Archaeoglobus fulgidus as an anomaly with respect to a phylogenetic tree based upon the code for ...
Jürgen Brosius
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc Natl Acad Sci U S A ...
Signal recognition particle RNA
... from Bacillus subtilis Archaeal SRP RNA Archaeoglobus fulgidus Eukaryotic protist SRP RNA from Trypanosoma brucei Eukaryotic ...
Horizontal gene transfer
Archaeoglobus fulgidus was seen as an anomaly with respect to a phylogenetic tree based upon the encoding for the enzyme HMGCoA ...
Archaeoglobus
The Archaeoglobus fulgidus genome is a circular chromosome roughly half the size of E. coli at 2,178,000 base pairs. Although ... PubMed references for Archaeoglobus PubMed Central references for Archaeoglobus Google Scholar references for Archaeoglobus See ... for Archaeoglobus Search Species2000 page for Archaeoglobus MicrobeWiki page for Archaeoglobus LPSN page for Archaeoglobus ... Archaeoglobus is a genus of the phylum Euryarchaeota. Archaeoglobus can be found in high-temperature oil fields where they may ...
CRISPR
showed evidence that CRISPR repeat regions from the genome of Archaeoglobus fulgidus were transcribed into long RNA molecules ...
3MMC: Structure Of The Dissimilatory Sulfite Reductase From Archaeoglobus Fulgidus
Archaeoglobus fulgidus Stetter ATCC ® 49558D-5™
Genomic DNA from Archeoglobus fulgidus Strain DSM 4304 TypeStrain=True Application: Genome sequencing strain ... Archaeoglobus fulgidus Stetter (ATCC® 49558D-5™) Strain Designations: Genomic DNA from Archeoglobus fulgidus Strain DSM 4304 [ ... The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390: 364-370, ...
RCSB PDB
- 1M5H: Formylmethanofuran:tetrahydromethanopterin formyltransferase from Archaeoglobus fulgidus...
Archaeon Archaeoglobus fulgidus [TaxId: 2234] A146-297. d1m5ha2. Alpha and beta proteins (a+b) Ferredoxin-like ... Archaeon Archaeoglobus fulgidus [TaxId: 2234] B1001-1145. d1m5hb1. Alpha and beta proteins (a+b) Ferredoxin-like ... Archaeon Archaeoglobus fulgidus [TaxId: 2234] B1146-1297. d1m5hb2. Alpha and beta proteins (a+b) Ferredoxin-like ... Archaeon Archaeoglobus fulgidus [TaxId: 2234] C2001-2145. d1m5hc1. Alpha and beta proteins (a+b) Ferredoxin-like ...
Properties and primary structure of a thermostable L-malate dehydrogenase from Archaeoglobus fulgidus. - PubMed - NCBI
Properties and primary structure of a thermostable L-malate dehydrogenase from Archaeoglobus fulgidus.. Langelandsvik AS1, ... A thermostable l-malate dehydrogenase from the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus was isolated ... A. fulgidus L-malate dehydrogenase was stable for 5 h at 90 degrees C, and the half-life at 101 degrees C was 80 min. Thus, A. ... fulgidus L-malate dehydrogenase is the most thermostable L-malate dehydrogenase characterized to date. Addition of K2HPO4 (1 M ...
RCSB PDB
- 1I0R: CRYSTAL STRUCTURE OF FERRIC REDUCTASE FROM ARCHAEOGLOBUS FULGIDUS Macromolecule Annotations Page
Discovery and Characterization of Iron Sulfide and Polyphosphate Bodies Coexisting in Archaeoglobus fulgidus Cells
... Daniel B. ... A,B) Slices from 3D tomograms reconstructed from cryoET tilt series of A. fulgidus whole cells in growth phase. The insets show ... Supplementary Figure S3: A. fulgidus development under varying nutritional conditions. A-E) TEM images of (A) a cell grown in ... Supplementary Figure S4: CryoEM of A. fulgidus cells after three generations of reduced or elevated phosphate conditions. A) ...
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Archaeoglobus fulgidus VC-16. › Archaeoglobus fulgidus str. DSM 4304. › Archaeoglobus fulgidus str. VC-16. › Archaeoglobus ... Archaeoglobus. › Archaeoglobus fulgidus. Strains i. › ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126, ATCC 49558, DSM ... Taxonomy - Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) Basket 0 ... Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126). ...
Role of metal-binding domains of the copper pump from Archaeoglobus fulgidus
CopA from the extreme thermophile Archaeoglobus fulgidus is a P-type ATPase that transports Cu(+) and Ag(+) and has individual ... Role of metal-binding domains of the copper pump from Archaeoglobus fulgidus Biochem Biophys Res Commun. 2006 Sep 15;348(1):124 ... CopA from the extreme thermophile Archaeoglobus fulgidus is a P-type ATPase that transports Cu(+) and Ag(+) and has individual ...
WoRMS - World Register of Marine Species - Archaeoglobus fulgidus Stetter, 1988
Archaeoglobus fulgidus gen. nov., sp. nov. a new taxon of extremely thermophilic Archaebacteria. Syst. Appl. Microbiol. 10:172- ... Archaeoglobus fulgidus gen. nov., sp. nov. a new taxon of extremely thermophilic Archaebacteria. Syst. Appl. Microbiol. 10:172- ... WoRMS (2018). Archaeoglobus fulgidus Stetter, 1988. Accessed at: http://www.marinespecies.org/aphia.php?p=taxdetails&id=573342 ...
Assessment of the Carbon Monoxide Metabolism of the Hyperthermophilic Sulfate-Reducing Archaeon Archaeoglobus fulgidus VC-16 by...
ala - Alanine dehydrogenase - Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) - ala gene...
sp,O28608,ALADH_ARCFU Alanine dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC ... Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126). ... Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) ... cellular organisms › Archaea › Euryarchaeota › Archaeoglobi › Archaeoglobales › Archaeoglobaceae › Archaeoglobus › ...
Structure of the Dissimilatory Sulfite Reductase from the Hyperthermophilic Archaeon Archaeoglobus fulgidus
We determined the crystal structure of the enzyme from the sulfate-reducing archaeon Archaeoglobus fulgidus at 2-Å resolution ... We determined the crystal structure of the enzyme from the sulfate-reducing archaeon Archaeoglobus fulgidus at 2-Å resolution ... Structure of the Dissimilatory Sulfite Reductase from the Hyperthermophilic Archaeon Archaeoglobus fulgidus. * Home ... Structure of the Dissimilatory Sulfite Reductase from the Hyperthermophilic Archaeon Archaeoglobus fulgidus. Publikationstyp:. ...
Extremophiles Page 3
Comparative Genome Sequencing Page 1
Adenylylsulphate reductase from the sulphate-reducing archaeon Archaeoglobus fulgidus: cloning and characterization of the...
... reductase from the extremely thermophilic sulphate-reducing archaeon Archaeoglobus fulgidus is an iron-sulphur flavoprotein ... Keyword(s): adenylylsulphate reductase , Archaeoglobus fulgidus , dissimilatory sulphate reduction , flavoprotein and iron- ... Adenylylsulphate reductase from the sulphate-reducing archaeon Archaeoglobus fulgidus: cloning and characterization of the ... reductase from the extremely thermophilic sulphate-reducing archaeon Archaeoglobus fulgidus is an iron-sulphur flavoprotein ...
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Erratum: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus *Hans-Peter ... The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus *Hans-Peter Klenk ... Archaeoglobus fulgidus,/i, . Opens in a new window. ... Archaeoglobus fulgidus,/i, . Opens in a new window. ...
Role of SRP19 in assembly of the Archaeoglobus fulgidus signal recognition particle. - ScienceOpen
Hyperthermophile - Wikipedia
IUCr) Acta Crystallographica Section F Volume 67, Part 2, February 2011
Discovery and Characterization of Iron Sulfide and Polyphosphate Bodies Coexisting in Archaeoglobus fulgidus Cells - pdf...
Discovery and Characterization of Iron Sulfide and Polyphosphate Bodies Coexisting in Archaeoglobus fulgidus Cells. . ... Discovery and Characterization of Iron Sulfide and Polyphosphate Bodies Coexisting in Archaeoglobus fulgidus Cells - Descarga ... Discovery and Characterization of Iron Sulfide and Polyphosphate Bodies Coexisting in Archaeoglobus fulgidus Cells. ... Archaeoglobus fulgidus strain VC16, a hyperthermophilic, anaerobic, and sulfate-reducing microorganism. Dense granules were ...
Structure of the ATP binding domain from the Archaeoglobus fulgidus Cu |sup|+|/sup|-ATPase - Fingerprint
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Unusual starch degradation pathway via cyclodextrins in the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus...
The hyperthermophilic archaeon Archaeoglobus fulgidus strain 7324 has been shown to grow on starch and sulfate and thus ... Archaeoglobus fulgidus, starch degradation, cyclodextrin glucanotransferase. Research affiliation:. OceanRep , GEOMAR , FB3 ... Unusual starch degradation pathway via cyclodextrins in the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus ... Unusual starch degradation pathway via cyclodextrins in the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus ...
5V5K | CRYSTAL STRUCTURE OF FERRITIN E65R MUTANT FROM HYPERTHERMOPHILIC ARCHAEON ARCHAEOGLOBUS FULGIDUS | 5V5K G | 3D Structure...
CRYSTAL STRUCTURE OF FERRITIN E65R MUTANT FROM HYPERTHERMOPHILIC ARCHAEON ARCHAEOGLOBUS FULGIDUS , 5V5K ... ARCHAEOGLOBUS FULGIDUS --. 5V5K_A. O29424 --. ESCHERICHIA COLI. ARCHAEOGLOBUS FULGIDUS --. 5V5K_E. O29424 --. ESCHERICHIA COLI ... ARCHAEOGLOBUS FULGIDUS --. 5V5K_G. O29424 --. ESCHERICHIA COLI. ARCHAEOGLOBUS FULGIDUS --. 5V5K_B. O29424 --. ESCHERICHIA COLI ... ARCHAEOGLOBUS FULGIDUS --. 5V5K_C. O29424 --. ESCHERICHIA COLI. ARCHAEOGLOBUS FULGIDUS --. 5V5K_H. O29424 --. ESCHERICHIA COLI ...
Proteins matched: Mevalonate kinase (MF 00217) | InterPro | EMBL-EBI
Emerging role of silent information regulator 1 (SIRT1) in hepatocellular carcinoma: a potential therapeutic target |...
Methods for identifying and classifying organisms by mass spectrometry and database searching - University of Maryland
IUCr) Acta Crystallographica Section D Volume 56, Part 12, December 2000
1S3Q | CRYSTAL STRUCTURES OF A NOVEL OPEN PORE FERRITIN FROM THE HYPERTHERMOPHILIC ARCHAEON ARCHAEOGLOBUS FULGIDUS | 1S3Q D |...
Zinc in the structure of Crystal Structure of Archaemetzincin (Amza) From Archaeoglobus Fulgidus At 2.16 A Resolution Complexed...
From Archaeoglobus Fulgidus At 2.16 A Resolution Complexed With Citrate ... The binding sites of Zinc atom in the structure of Crystal Structure of Archaemetzincin (Amza) From Archaeoglobus Fulgidus At ... Zinc in the structure of Crystal Structure of Archaemetzincin (Amza) From Archaeoglobus Fulgidus At 2.16 A Resolution Complexed ...
Frontiers in Bioscience 5, d821-836, September 1, 2000]
Archaeoglobus fulgidus (70), Pyrococcus horikoshii (71) and Aeropyrum pernix (72), but one or two FKBPs. Hyperthermophilic ... sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390, 364-370 (1997) 71. Kawarabayasi, Y., M. Sawada, H. Horikawa, Y. ... fulgidus (70), P. horikoshii (71), and Aeropyrum pernix (72). We isolated genes encoding a short-type FKBP from Methanococcus ... fulgidus, also exhibited little PPIase activity (Ideno et al. unpublished data). One of two consensus FKBP motifs in PROSITE ...
Archaeon10
- The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. (atcc.org)
- A thermostable l-malate dehydrogenase from the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus was isolated and characterized, and its gene was cloned and sequenced. (nih.gov)
- We determined the crystal structure of the enzyme from the sulfate-reducing archaeon Archaeoglobus fulgidus at 2-Å resolution and compared it with that of the phylogenetically related assimilatory Sir (aSir). (uni-konstanz.de)
- Adenylylsulphate (adenosine-5′-phosphosulphate, APS) reductase from the extremely thermophilic sulphate-reducing archaeon Archaeoglobus fulgidus is an iron-sulphur flavoprotein containing one non-covalently bound flavin group, eight non-haem iron and six labile sulphide atoms per molecule. (microbiologyresearch.org)
- In vitro characterization of this process is now reported using recombinantly expressed components of SRP from the hyperthermophilic, sulfate-reducing archaeon Archaeoglobus fulgidis. (scienceopen.com)
- The structure of GlnK1, one of three GlnK proteins encoded by the hyperthermophilic archaeon A. fulgidus , was solved to 2.28 Å resolution. (iucr.org)
- and the archaeon Archaeoglobus fulgidus. (wikipedia.org)
- Unusual starch degradation pathway via cyclodextrins in the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus strain 7324. (geomar.de)
- The hyperthermophilic archaeon Archaeoglobus fulgidus strain 7324 has been shown to grow on starch and sulfate and thus represents the first sulfate reducer able to degrade polymeric sugars. (geomar.de)
- The zinc flavoprotein (FAD) from the archaeon Archaeoglobus fulgidus cannot utilize NAD+, cytochrome c, methylene blue or dimethylnaphthoquinone as acceptors. (genome.jp)
Hyperthermophilic2
- Here, we report the cellular organization and chemical compositions of storage granules in the Euryarchaeon, Archaeoglobus fulgidus strain VC16, a hyperthermophilic, anaerobic, and sulfate-reducing microorganism. (duhnnae.com)
- 2017. Complete genome sequence analysis of Archaeoglobus fulgidus strain 7324 (DSM 8774), a hyperthermophilic archaeal sulfate reducer from a North Sea oil field. (uib.no)
Archaea3
- Comparative genomic studies on archaeal genomes provide evidence that members of the genus Archaeoglobus are the closest relatives of methanogenic archaea. (wikipedia.org)
- Additionally, 18 proteins which are uniquely found in members of Thermococci, Archaeoglobus and methanogens have been identified, suggesting that these three groups of Archaea may have shared a common relative exclusive of other Archaea. (wikipedia.org)
- Among the most commonly seen and studied Archaea is a bug called Archaeoglobus fulgidus . (npr.org)
Genus2
- Archaeoglobus is a genus of the phylum Euryarchaeota. (wikipedia.org)
- Members of the genus Archaeoglobus are hyperthermophiles and obtain energy by reducing oxidized sulfur compounds to H 2 S. Archaeoglobus species, because of their ability to reduce sulfate, may be important contributors of biogenic H 2 S generation in high-temperature oil fields. (asmscience.org)
Species1
- Archaeoglobus species utilize their environment by acting as scavengers with many potential carbon sources. (wikipedia.org)
Genome sequence1
- The complete A. fulgidus genome sequence revealed the presence of a nearly complete set of genes for methanogenesis. (wikipedia.org)
NCBI2
- PubMed references for Archaeoglobus PubMed Central references for Archaeoglobus Google Scholar references for Archaeoglobus See the NCBI webpage on Archaeoglobus. (wikipedia.org)
- NCBI taxonomy page for Archaeoglobus Search Tree of Life taxonomy pages for Archaeoglobus Search Species2000 page for Archaeoglobus MicrobeWiki page for Archaeoglobus LPSN page for Archaeoglobus Archaeoglobus at BacDive - the Bacterial Diversity Metadatabase Stetter, KO (1988). (wikipedia.org)
Microbe1
- This bacterium-like microbe, Archaeoglobus fulgidus, seen here in a false-color image, can live in the high temperatures found near deep-sea vents. (npr.org)
RIO21
- Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes. (cathdb.info)
Archaeal1
- This conservation was first suggested by the combined studies led by Voordouw and Trüper showing that the bacterial ( Desulfovibrio ) and archaeal ( Archaeoglobus ) genes have approximately 60% nucleotide similarity ( 11 , 20 , 25 , 45 ). (asm.org)
Bacterium1
- To do this, they turned to Archaeoglobus fulgidus , a bacterium that lives in hydrothermal vents. (genengnews.com)
Catalytic2
- The specificity and catalytic parameters of FENs derived from T5 bacteriophage and Archaeoglobus fulgidus were studied with a range of single oligonucleotide DNA substrates. (nih.gov)
- Comparison of the catalytic parameters of the A. fulgidus FEN employing flap and double-flap substrates indicates that binding interactions with the 3'-extrahelical nucleotide stabilise the ground state FEN-DNA interaction, leading to stimulation of comparative reactions at DNA concentrations below saturation with the single flap substrate. (nih.gov)
Utilize1
- With the exception of A. fulgidus, all known microbes that grow via perchlorate reduction utilize the enzymes perchlorate reductase and chlorite dismutase, which collectively take perchlorate to innocuous chloride. (wikipedia.org)
HAMP2
- We first performed molecular dynamics simulation on the prototype HAMP domain Af1503 from Archaeoglobus fulgidus. (nih.gov)
- By analogy to the first solution structure of an isolated HAMP domain from Archaeoglobus , Aer HAMP is proposed to fold into a four-helix bundle that rotates between a signal-on and signal-off conformation. (wiley.com)
Hydrothermal vents1
- Archaeoglobus members are hyperthermophiles that can be found in hydrothermal vents, oil deposits, and hot springs. (wikipedia.org)
ATPase3
- CopA from the extreme thermophile Archaeoglobus fulgidus is a P-type ATPase that transports Cu(+) and Ag(+) and has individual metal-binding domains (MBDs) at both N- and C-termini. (nih.gov)
- Testing both models, the delivery of Cu + by Archaeoglobus fulgidus Cu + chaperone CopZ to the corresponding Cu + -ATPase, CopA, was studied. (pnas.org)
- To better understand these phenomena, we have studied the delivery of Cu + by the Archaeoglobus fulgidus Cu + chaperone, CopZ, to the corresponding Cu + -ATPase, CopA. (pnas.org)
Recombinant1
- Extrinsic factors potassium chloride and glycerol induce thermostability in recombinant anthranilate synthase from Archaeoglobus fulgidus. (howard.edu)
Genes1
- The function of these genes in A. fulgidus remains unknown, while the lack of the enzyme methyl-CoM reductase does not allow for methanogenesis to occur by a mechanism similar to that found in other methanogens. (wikipedia.org)
Protein2
- A protein of interest (POI) inside a 24-subunit Archaeoglobus fulgidus ferritin exoshell, which is 12 nanometers in diameter (only half of the shell is shown). (genengnews.com)
- Like eukaryotes, A. fulgidus produces an iron-carrying protein, ferritin (AfFtn), which is composed of 24 subunits. (genengnews.com)
Flavoprotein1
- The Archaeoglobus fulgidus D-lactate dehydrogenase is a Zn(2+) flavoprotein. (genome.jp)
Metabolism1
- 2014. Identification of key components in the energy metabolism of Archaeoglobus fulgidus by transcriptome analyses. (uib.no)
CryoEM2
- Supplementary Figure S4: CryoEM of A. fulgidus cells after three generations of reduced or elevated phosphate conditions. (hindawi.com)
- Dense granules were apparent in A. fulgidus cells imaged by cryo electron microscopy cryoEM but not so by negative stain electron microscopy. (duhnnae.com)
Granules1
- A. fulgidus cells in exponential growth phase showing newly developed granules. (hindawi.com)
Structure1
- Properties and primary structure of a thermostable L-malate dehydrogenase from Archaeoglobus fulgidus. (nih.gov)
Pathway2
- Enzymes and coenzymes of the carbon monoxide dehydrogenase pathway for autotrophic CO2 fixation in Archaeoglobus lithotrophicus and the lack of carbon monoxide dehydrogenase in the heterotrophic A. profundus Arch. (wikipedia.org)
- Instead, evidence is presented here that A. fulgidus utilizes an unusual pathway of starch degradation involving cyclodextrins as intermediates. (geomar.de)
Assembly1
- Role of SRP19 in assembly of the Archaeoglobus fulgidus signal recognition particle. (scienceopen.com)
Domain1
- A. fulgidus SRP54 M-domain" J. Biomol. (wisc.edu)
Extremely1
- Archaeoglobus grow anaerobically at extremely high temperatures between 60 and 95 °C, with optimal growth at 83 °C (ssp. (wikipedia.org)
Environment1
- 83 °C) are ideal growth temperatures for Archaeoglobus, although a biofilm environment provides some environmental elasticity. (wikipedia.org)
Grow1
- Although this is bacteria archaeoglobus can grow to the size of a quarter if fed properly. (wikipedia.org)
Cells1
- A,B) Slices from 3D tomograms reconstructed from cryoET tilt series of A. fulgidus whole cells in growth phase. (hindawi.com)
Region1
- However, a single product corresponding to reaction 1 nt into the double-stranded region occurred with A. fulgidus FEN when substrates possessed a 3'-extrahelical nt. (nih.gov)
Found3
- Arrows indicate the location of "scars" found in A. fulgidus cell ghosts. (hindawi.com)
- Archaeoglobus can be found in high-temperature oil fields where they may contribute to oil field souring. (wikipedia.org)
- This is supported by the presence of 10 conserved signature proteins that are uniquely found in all methanogens and Archaeoglobus. (wikipedia.org)
Life1
- A. fulgidus L-malate dehydrogenase was stable for 5 h at 90 degrees C, and the half-life at 101 degrees C was 80 min. (nih.gov)