Alcaligenaceae: A family of gram-negative, aerobic, non-spore forming rods or cocci. Well known genera include ACHROMOBACTER; ALCALIGENES; and BORDETELLA.Betaproteobacteria: A class in the phylum PROTEOBACTERIA comprised of chemoheterotrophs and chemoautotrophs which derive nutrients from decomposition of organic material.RNA, Ribosomal, 16S: Constituent of 30S subunit prokaryotic ribosomes containing 1600 nucleotides and 21 proteins. 16S rRNA is involved in initiation of polypeptide synthesis.Phylogeny: The relationships of groups of organisms as reflected by their genetic makeup.Sequence Analysis, DNA: A multistage process that includes cloning, physical mapping, subcloning, determination of the DNA SEQUENCE, and information analysis.DNA, Bacterial: Deoxyribonucleic acid that makes up the genetic material of bacteria.Achromobacter denitrificans: The type species of gram negative, aerobic bacteria in the genus ACHROMOBACTER. Previously in the genus ALCALIGENES, the classification and nomenclature of this species has been frequently emended. The two subspecies, Achromobacter xylosoxidans subsp. denitrificans and Achromobacter xylosoxidans subsp. xylosoxidans are associated with infections.Methylobacterium extorquens: A species of METHYLOBACTERIUM which can utilize acetate, ethanol, or methylamine as a sole carbon source. (From Bergey's Manual of Determinative Bacteriology, 9th ed)Chryseobacterium: A genus of aerobic, gram-negative bacteria in the family FLAVOBACTERIACEAE. Many of its species were formerly in the genus FLAVOBACTERIUM.Amoeba: A genus of ameboid protozoa. Characteristics include a vesicular nucleus and the formation of several lodopodia, one of which is dominant at a given time. Reproduction occurs asexually by binary fission.Chlamydiales: An order of obligately intracellular, gram-negative bacteria that have the chlamydia-like developmental cycle of replication. This is a two-stage cycle that includes a metabolically inactive infectious form, and a vegetative form that replicates by binary fission. Members of Chlamydiales are disseminated by aerosol or by contact. There are at least six recognized families: CHLAMYDIACEAE, Criblamydiaceae, Parachlamydiaceae, Rhabdochlamydia, Simkaniaceae, and Waddliaceae.Acanthamoeba: A genus of free-living soil amoebae that produces no flagellate stage. Its organisms are pathogens for several infections in humans and have been found in the eye, bone, brain, and respiratory tract.Rickettsia: A genus of gram-negative, aerobic, rod-shaped bacteria often surrounded by a protein microcapsular layer and slime layer. The natural cycle of its organisms generally involves a vertebrate and an invertebrate host. Species of the genus are the etiological agents of human diseases, such as typhus.Bordetella avium: A species of BORDETELLA isolated from the respiratory tracts of TURKEYS and other BIRDS. It causes a highly contagious bordetellosis.Bordetella: A genus of gram-negative, aerobic bacteria whose cells are minute coccobacilli. It consists of both parasitic and pathogenic species.Bordetella Infections: Infections with bacteria of the genus BORDETELLA.Bordetella pertussis: A species of gram-negative, aerobic bacteria that is the causative agent of WHOOPING COUGH. Its cells are minute coccobacilli that are surrounded by a slime sheath.Databases, Protein: Databases containing information about PROTEINS such as AMINO ACID SEQUENCE; PROTEIN CONFORMATION; and other properties.Klebsiella pneumoniae: Gram-negative, non-motile, capsulated, gas-producing rods found widely in nature and associated with urinary and respiratory infections in humans.Malate Dehydrogenase: An enzyme that catalyzes the conversion of (S)-malate and NAD+ to oxaloacetate and NADH. EC 1.1.1.37.Klebsiella Infections: Infections with bacteria of the genus KLEBSIELLA.MalatesOxaloacetic Acid: A dicarboxylic acid ketone that is an important metabolic intermediate of the CITRIC ACID CYCLE. It can be converted to ASPARTIC ACID by ASPARTATE TRANSAMINASE.Algorithms: A procedure consisting of a sequence of algebraic formulas and/or logical steps to calculate or determine a given task.Quinones: Hydrocarbon rings which contain two ketone moieties in any position. They can be substituted in any position except at the ketone groups.Bordetella bronchiseptica: A species of BORDETELLA that is parasitic and pathogenic. It is found in the respiratory tract of domestic and wild mammalian animals and can be transmitted from animals to man. It is a common cause of bronchopneumonia in lower animals.Monoterpenes: Compounds with a core of 10 carbons generally formed via the mevalonate pathway from the combination of 3,3-dimethylallyl pyrophosphate and isopentenyl pyrophosphate. They are cyclized and oxidized in a variety of ways. Due to the low molecular weight many of them exist in the form of essential oils (OILS, VOLATILE).Alcaligenes: A genus of gram-negative, aerobic, motile bacteria that occur in water and soil. Some are common inhabitants of the intestinal tract of vertebrates. These bacteria occasionally cause opportunistic infections in humans.Molecular Sequence Data: Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.Western Australia: A state in western Australia. Its capital is Perth. It was first visited by the Dutch in 1616 but the English took possession in 1791 and permanent colonization began in 1829. It was a penal settlement 1850-1888, became part of the colonial government in 1886, and was granted self government in 1890. (From Webster's New Geographical Dictionary, 1988, p1329)Australia: The smallest continent and an independent country, comprising six states and two territories. Its capital is Canberra.Directories as Topic: Lists of persons or organizations, systematically arranged, usually in alphabetic or classed order, giving address, affiliations, etc., for individuals, and giving address, officers, functions, and similar data for organizations. (ALA Glossary of Library and Information Science, 1983)Santalaceae: A plant family of the order Santalales, subclass Rosidae, class Magnoliopsida. They are parasites that form connections (haustoria) to their hosts to obtain water and nutrients. The one-seeded fruit may be surrounded by a brightly colored nut-like structure.MiningCommitment of Mentally Ill: Legal process required for the institutionalization of a patient with severe mental problems.Oceanic Ancestry Group: Individuals whose ancestral origins are in the islands of the central and South Pacific, including Micronesia, Melanesia, Polynesia, and traditionally Australasia.Pertussis Vaccine: A suspension of killed Bordetella pertussis organisms, used for immunization against pertussis (WHOOPING COUGH). It is generally used in a mixture with diphtheria and tetanus toxoids (DTP). There is an acellular pertussis vaccine prepared from the purified antigenic components of Bordetella pertussis, which causes fewer adverse reactions than whole-cell vaccine and, like the whole-cell vaccine, is generally used in a mixture with diphtheria and tetanus toxoids. (From Dorland, 28th ed)Whooping Cough: A respiratory infection caused by BORDETELLA PERTUSSIS and characterized by paroxysmal coughing ending in a prolonged crowing intake of breath.Virulence Factors, Bordetella: A set of BACTERIAL ADHESINS and TOXINS, BIOLOGICAL produced by BORDETELLA organisms that determine the pathogenesis of BORDETELLA INFECTIONS, such as WHOOPING COUGH. They include filamentous hemagglutinin; FIMBRIAE PROTEINS; pertactin; PERTUSSIS TOXIN; ADENYLATE CYCLASE TOXIN; dermonecrotic toxin; tracheal cytotoxin; Bordetella LIPOPOLYSACCHARIDES; and tracheal colonization factor.Research Support, U.S. Gov't, Non-P.H.S.Research Support, U.S. Gov't, P.H.S.Research Support, Non-U.S. Gov'tResearch Support, U.S. GovernmentMetagenome: A collective genome representative of the many organisms, primarily microorganisms, existing in a community.Research Support, American Recovery and Reinvestment ActResearch Support, N.I.H., ExtramuralLactulose: A synthetic disaccharide used in the treatment of constipation and hepatic encephalopathy. It has also been used in the diagnosis of gastrointestinal disorders. (From Martindale, The Extra Pharmacopoeia, 30th ed, p887)Systems Biology: Comprehensive, methodical analysis of complex biological systems by monitoring responses to perturbations of biological processes. Large scale, computerized collection and analysis of the data are used to develop and test models of biological systems.Endotoxemia: A condition characterized by the presence of ENDOTOXINS in the blood. On lysis, the outer cell wall of gram-negative bacteria enters the systemic circulation and initiates a pathophysiologic cascade of pro-inflammatory mediators.Rifamycins: A group of ANTI-BACTERIAL AGENTS characterized by a chromophoric naphthohydroquinone group spanned by an aliphatic bridge not previously found in other known ANTI-BACTERIAL AGENTS. They have been isolated from fermentation broths of Streptomyces mediterranei.Case-Control Studies: Studies which start with the identification of persons with a disease of interest and a control (comparison, referent) group without the disease. The relationship of an attribute to the disease is examined by comparing diseased and non-diseased persons with regard to the frequency or levels of the attribute in each group.Bacteria: One of the three domains of life (the others being Eukarya and ARCHAEA), also called Eubacteria. They are unicellular prokaryotic microorganisms which generally possess rigid cell walls, multiply by cell division, and exhibit three principal forms: round or coccal, rodlike or bacillary, and spiral or spirochetal. Bacteria can be classified by their response to OXYGEN: aerobic, anaerobic, or facultatively anaerobic; by the mode by which they obtain their energy: chemotrophy (via chemical reaction) or PHOTOTROPHY (via light reaction); for chemotrophs by their source of chemical energy: CHEMOLITHOTROPHY (from inorganic compounds) or chemoorganotrophy (from organic compounds); and by their source for CARBON; NITROGEN; etc.; HETEROTROPHY (from organic sources) or AUTOTROPHY (from CARBON DIOXIDE). They can also be classified by whether or not they stain (based on the structure of their CELL WALLS) with CRYSTAL VIOLET dye: gram-negative or gram-positive.

Sutterella stercoricanis sp. nov., isolated from canine faeces. (1/36)

Morphological, biochemical and molecular genetic studies were carried out on an unknown non-spore-forming, Gram-negative, rod-shaped bacterium which was isolated from dog faeces. The bacterium grew under anaerobic conditions, was asaccharolytic, resistant to 20 % (v/v) bile and was oxidase- and urease-negative. Phylogenetic analysis based on comparative 16S rRNA gene sequencing showed that the unidentified bacterium clustered with Sutterella wadsworthensis, although a sequence divergence of >5 % indicated that the bacterium from dog faeces represented a previously unrecognized subline within the genus. On the basis of the presented findings, a novel species, Sutterella stercoricanis sp. nov., is described. The type strain of Sutterella stercoricanis is 5BAC4T (= CCUG 47620T = CIP 108024T).  (+info)

Advenella incenata gen. nov., sp. nov., a novel member of the Alcaligenaceae, isolated from various clinical samples. (2/36)

A polyphasic taxonomic study of 14 isolates recovered from various human and veterinary clinical samples was performed. Phenotypically these isolates shared several characteristics with members of the Alcaligenaceae and related genera. Random amplified polymorphic DNA fingerprinting and whole-cell protein analysis suggested the presence of multiple genomic groups, which was confirmed by DNA-DNA hybridization experiments. 16S rRNA gene sequence analysis indicated that these isolates were related to the genera Pelistega, Taylorella, Oligella, Pigmentiphaga, Alcaligenes, Kerstersia, Achromobacter and Bordetella and belonged to the family Alcaligenaceae. Based on the results of the present study the organisms were classified in a novel genus, Advenella gen. nov. This genus comprises one named species, Advenella incenata sp. nov. (type strain LMG 22250T=CCUG 45225T) and five currently unnamed genomic species. The DNA G+C content of members of the novel genus Advenella is between 54.0 and 57.7 mol%.  (+info)

Pusillimonas noertemannii gen. nov., sp. nov., a new member of the family Alcaligenaceae that degrades substituted salicylates. (3/36)

The taxonomic position of a Pseudomonas-like strain, designated BN9(T), was investigated. This strain had previously been isolated as a 5-aminosalicylate-degrading organism from a 6-aminonaphthalene-2-sulphonate-degrading mixed bacterial culture. Previously, detection of ubiquinone Q-8, a polyamine pattern with putrescine, spermidine and 2-hydroxyputrescine as the major polyamines, and partial 16S rRNA gene sequencing had suggested that strain BN9(T) belongs to the 'Betaproteobacteria'. This was supported by sequencing the 16S rRNA gene, which demonstrated 94-96 % sequence similarity to different species of the genera Achromobacter, Alcaligenes and Bordetella, and suggested that strain BN9(T) represents a member of the family Alcaligenaceae. Different methods for the construction of phylogenetic dendrograms placed the strain separately from all other genera within the Alcaligenaceae. Fatty acid analysis demonstrated the presence of high concentrations of C(19 : 0) cyclo omega8c. On the basis of low 16S rRNA gene sequence similarity to other members of the Alcaligenaceae, fatty acid and polar lipid profiles, and other unique phenotypic properties of strain BN9(T), the creation of a new genus and species with the name Pusillimonas noertemannii gen. nov., sp. nov. is proposed. The type strain is BN9(T) (= DSM 10065(T) = NCIMB 14020(T)).  (+info)

Castellaniella gen. nov., to accommodate the phylogenetic lineage of Alcaligenes defragrans, and proposal of Castellaniella defragrans gen. nov., comb. nov. and Castellaniella denitrificans sp. nov. (4/36)

Comparative 16S rRNA gene sequence analysis indicates that two distinct sublineages exist within the genus Alcaligenes: the Alcaligenes faecalis lineage, comprising Alcaligenes aquatilis and A. faecalis (with the three subspecies A. faecalis subsp. faecalis, A. faecalis subsp. parafaecalis and A. faecalis subsp. phenolicus), and the Alcaligenes defragrans lineage, comprising A. defragrans. This phylogenetic discrimination is supported by phenotypic and chemotaxonomic differences. It is proposed that the A. defragrans lineage constitutes a distinct genus, for which the name Castellaniella gen. nov. is proposed. The type strain for Castellaniella defragrans gen. nov., comb. nov. is 54PinT (=CCUG 39790T = CIP 105602T = DSM 12141T). Finally, on the basis of data from the literature and new DNA-DNA hybridization and phenotypic data, the novel species Castellaniella denitrificans sp. nov. (type strain NKNTAUT = DSM 11046T = CCUG 39541T) is proposed for two strains previously identified as strains of A. defragrans.  (+info)

Tetrathiobacter mimigardefordensis sp. nov., isolated from compost, a betaproteobacterium capable of utilizing the organic disulfide 3,3'-dithiodipropionic acid. (5/36)

In this study, a novel betaproteobacterium, strain DPN7(T), was isolated under mesophilic conditions from compost because of its capacity to utilize the organic disulfide 3,3'-dithiodipropionic acid. Analysis of the 16S rRNA gene sequence of strain DPN7(T) revealed 98.5 % similarity to that of Tetrathiobacter kashmirensis LMG 22695(T). Values for sequence similarity to members of the genera Alcaligenes, Castellaniella and Taylorella, the nearest neighbours of the genus Tetrathiobacter, were about 95 % or less. The DNA G + C content of strain DPN7(T) was 55.1 mol%. The level of DNA-DNA hybridization between strain DPN7(T) and T. kashmirensis LMG 22695(T) was 41 %, whereas it was much lower between strain DPN7(T) and Alcaligenes faecalis LMG 1229(T) (7 %) or Castellaniella defragrans LMG 18538(T) (5 %). This genotypic divergence was supported by differences in biochemical and chemotaxonomic characteristics. For this reason, and because of the differences in the protein and fatty acid profiles, strain DPN7(T) should be classified within a novel species of Tetrathiobacter, for which the name Tetrathiobacter mimigardefordensis sp. nov. is proposed. The type strain is strain DPN7(T) (=DSM 17166(T) = LMG 22922(T)).  (+info)

Pigmentiphaga daeguensis sp. nov., isolated from wastewater of a dye works, and emended description of the genus Pigmentiphaga. (6/36)

A Gram-negative, non-spore-forming, rod-shaped Pigmentiphaga-like bacterial strain, K110(T), was isolated from wastewater collected from a dye works in Korea and was subjected to a polyphasic taxonomic analysis. Strain K110(T) grew optimally at pH 7.0--8.0 and 37 degrees C in the presence of 0.5 % (w/v) NaCl. It contained Q-8 as the predominant ubiquinone and C(16 : 0), cyclo C(17 : 0) and cyclo C(19 : 0)omega8c as the major fatty acids. The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine and two unidentified aminolipids. The DNA G+C content was 67.4 mol%. In a neighbour-joining phylogenetic tree constructed on the basis of 16S rRNA gene sequences, strain K110(T) joined Pigmentiphaga kullae, the sole species of the genus, at a bootstrap confidence level of 100 %. Strain K110(T) exhibited a 16S rRNA gene sequence similarity of 99.4 % with respect to the type strain of P. kullae. Although strain K110(T) was found to be similar to P. kullae in terms of phenotypic properties, it differed in terms of motility, polar lipids, DNA-DNA relatedness and repetitive extragenic palindromic PCR genomic fingerprinting patterns. On the basis of phenotypic, phylogenetic and genetic data, strain K110(T) represents a novel species of the genus Pigmentiphaga, for which the name Pigmentiphaga daeguensis sp. nov. is proposed. The type strain is K110(T) (=KCTC 12838(T)=JCM 14330(T)).  (+info)

Sutterella parvirubra sp. nov. and Megamonas funiformis sp. nov., isolated from human faeces. (7/36)

 (+info)

Novel pathway for catabolism of the organic sulfur compound 3,3'-dithiodipropionic acid via 3-mercaptopropionic acid and 3-Sulfinopropionic acid to propionyl-coenzyme A by the aerobic bacterium Tetrathiobacter mimigardefordensis strain DPN7. (8/36)

 (+info)

ID W8WYL2_CASDE Unreviewed; 561 AA. AC W8WYL2; DT 14-MAY-2014, integrated into UniProtKB/TrEMBL. DT 14-MAY-2014, sequence version 1. DT 25-OCT-2017, entry version 19. DE SubName: Full=Glycerol-3-phosphate dehydrogenase {ECO:0000313,EMBL:CDM24848.1}; DE EC=1.1.5.3 {ECO:0000313,EMBL:CDM24848.1}; GN ORFNames=BN940_11951 {ECO:0000313,EMBL:CDM24848.1}; OS Castellaniella defragrans 65Phen. OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Castellaniella. OX NCBI_TaxID=1437824 {ECO:0000313,EMBL:CDM24848.1, ECO:0000313,Proteomes:UP000019805}; RN [1] {ECO:0000313,EMBL:CDM24848.1, ECO:0000313,Proteomes:UP000019805} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=65Phen {ECO:0000313,EMBL:CDM24848.1}; RX PubMed=24952578; DOI=10.1186/1471-2180-14-164; RA Petasch J., Disch E.M., Markert S., Becher D., Schweder T., Huttel B., RA Reinhardt R., Harder J.; RT "The oxygen-independent metabolism of cyclic monoterpenes in RT Castellaniella defragrans 65Phen."; RL BMC ...
Lineage: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella ...
In this study, three polysaccharides including water-soluble polysaccharide (WSP), dilute alkali-soluble polysaccharide (DASP) and concentrated alkali-soluble polysaccharide (CASP) were extracted from purple sweet potatoes and then administered to normal and cyclophosphamide (CTX) treated mice by gavage. The results showed that WSP and CASP could restore the spleen index and immune cytokine (IL-2 and IL-6) levels in CTX treated mice, while DASP could enhance the levels of TNF-α, IL-2 and IL-6. As compared to the normal control group, WSP and CASP treatment groups exhibited increased levels of Bacteroidetes, Lachnospiraceae and Oscillospira, but decreased levels of Firmicutes, Alcaligenaceae and Sutterella in normal mice ...
ID A0A0H4W4T7_9BORD Unreviewed; 231 AA. AC A0A0H4W4T7; DT 14-OCT-2015, integrated into UniProtKB/TrEMBL. DT 14-OCT-2015, sequence version 1. DT 22-NOV-2017, entry version 16. DE SubName: Full=DnaA regulatory inactivator Hda {ECO:0000313,EMBL:AKQ57115.1}; GN Name=hda {ECO:0000313,EMBL:AKQ57115.1}; GN ORFNames=ACR54_03827 {ECO:0000313,EMBL:AKQ57115.1}; OS Bordetella hinzii. OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. OX NCBI_TaxID=103855 {ECO:0000313,EMBL:AKQ57115.1, ECO:0000313,Proteomes:UP000036382}; RN [1] {ECO:0000313,Proteomes:UP000036382} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=F582 {ECO:0000313,Proteomes:UP000036382}; RA Weigand M.R., Changayil S., Kulasekarapandian Y., Batra D., RA Williams M.M., Tondella M.L.; RT "Complete Genome Sequences of Two Bordetella hinzii Isolated from RT Humans."; RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the DnaA family. CC ...
ID BORPD_1_PE2941 STANDARD; PRT; 486 AA. AC BORPD_1_PE2941; A9ISA6; DT 00-JAN-0000 (Rel. 1, Created) DT 00-JAN-0000 (Rel. 2, Last sequence update) DT 00-JAN-0000 (Rel. 3, Last annotation update) DE SubName: Full=Putative transmembrane efflux protein; (BORPD_1.PE2941). GN OrderedLocusNames=Bpet2935; OS BORDETELLA PETRII DSM 12804. OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. OX NCBI_TaxID=340100; RN [0] RP -.; RG -.; RL -.; CC -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS BORPD_1.PE2941. CC Bordetella petrii DSM 12804, complete genome. CC complete sequence. CC -!- ANNOTATIONS ORIGIN:A9ISA6_BORPD CC -!- GENE_FAMILY: HOG000239124 [ FAMILY / ALN / TREE ] DR UniProtKB/Swiss-Prot; A9ISA6; -. DR EMBL; AM902716; CAP43277.1; -; Genomic_DNA. DR RefSeq; YP_001631545.1; NC_010170.1. DR ProteinModelPortal; A9ISA6; -. DR STRING; A9ISA6; -. DR GeneID; 5820419; -. DR GenomeReviews; AM902716_GR; Bpet2935. DR KEGG; bpt:Bpet2935; -. DR OMA; TSTHTIG; -. DR ...
ID BOPER1_1_PE1000 STANDARD; PRT; 266 AA. AC BOPER1_1_PE1000; Q7VZ03; DT 00-JAN-0000 (Rel. 1, Created) DT 00-JAN-0000 (Rel. 2, Last sequence update) DT 00-JAN-0000 (Rel. 3, Last annotation update) DE SubName: Full=Competence lipoprotein; (BOPER1_1.PE1000). GN Name=comL; OrderedLocusNames=BP1146; OS BORDETELLA PERTUSSIS TOHAMA I. OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. OX NCBI_TaxID=257313; RN [0] RP -.; RG -.; RL -.; CC -!- SEQ. DATA ORIGIN: Translated from the HOGENOM CDS BOPER1_1.PE1000. CC Bordetella pertussis Tohama I, complete genome. CC complete sequence. CC -!- ANNOTATIONS ORIGIN:Q7VZ03_BORPE CC -!- GENE_FAMILY: HOG000260923 [ FAMILY / ALN / TREE ] DR UniProtKB/Swiss-Prot; Q7VZ03; -. DR EMBL; BX640414; CAE41443.1; -; Genomic_DNA. DR RefSeq; NP_879922.1; NC_002929.2. DR GeneID; 2665391; -. DR GenomeReviews; BX470248_GR; BP1146. DR KEGG; bpe:BP1146; -. DR OMA; IHVADYY; -. DR PhylomeDB; Q7VZ03; -. DR ProtClustDB; CLSK920261; -. DR GO; ...
By using a combination of PLFA analysis, SSU rRNA and functional gene (nirK and nirS) clone libraries, and a cultivation approach, we were able to examine the effect of biostimulation on microbial community structure and identify and isolate a microorganism that likely plays a role in nitrate removal in an acidic aquifer cocontaminated with nitrate and uranium. The use of PCR and cloning methods for microbial community analysis is qualitative or "semiquantitative," due to several well-recognized limitations (30). In this study, PCR and cloning biases may have affected the frequency in which some OTUs and GLTGs in clone libraries were detected. Also, the limited number of clones analyzed may have led to underestimated levels of diversity and detection of only the most abundant species and genera. The percent coverage in each library ranged from 64 to 78% at the OTU level and 80 to 83% at the GLTG level. The use of PLFA analysis, however, as a quantitative measure helped demonstrate the inverse ...
Shop Beta-myrcene synthase ELISA Kit, Recombinant Protein and Beta-myrcene synthase Antibody at MyBioSource. Custom ELISA Kit, Recombinant Protein and Antibody are available.
Intermediate in the commercial production of terpene alcohols which serve as intermediates for the production of large-volume aroma and flavor chemicals. Used as scenting agents in cosmetics, soaps, and detergents. Beta-myrcene is a peripheral analgesic substance and the active ingredient in lemongrass tea. Identified in over 200 plants and detected in emissions of plywood veneer dryers. Associated with tobacco: reported either as a natural component of tobacco, pyrolysis product (in tobacco smoke), or additive for one or more types of tobacco products.. ...
TY - CONF. T1 - Azoreductase from the alkalithermophilic Bacillus sp. strain SF. AU - Deller, Sigrid. AU - Trenker-El-Toukhy, Rosemarie. AU - Macheroux, Peter. PY - 2004. Y1 - 2004. M3 - Poster. ER - ...
Four enzymes are involved in the 4S pathway, 3 of which are directly involved in the conversion of DBT to 2-HBP. Dibenzothiophene monooxygenase (DszC) is responsible for the first two steps of the pathway, converting DBT to DBT-sulfoxide and finally to DBT-sulfone (DBTO2) through the addition of 2 oxygen atoms to the sulfur atom. DBT-sulfone monooxygenase (DszA) then carries out the next step in the pathway, producing 2-hydroxybiphenyl-2-sulfinic acid (HBPS) through addition of a final oxygen to the heteroatom. This causes cleavage of the chemical bonds at the sulfur, breaking the ring and converting the compound from a 3-ring structure to a 2-ring structure. HBPS is then converted to the final product of the 4S pathway by HBPS desulfinase (DszB), producing 2-HBP. At this point, the sulfur has been released from the hydrocarbon in the form of sulfite.. The first three steps of the 4S pathway require FMNH2 and subsequently reduces the reductive power of the cell. WIn order to regain this power an ...
Four enzymes are involved in the 4S pathway, 3 of which are directly involved in the conversion of DBT to 2-HBP. Dibenzothiophene monooxygenase (DszC) is responsible for the first two steps of the pathway, converting DBT to DBT-sulfoxide and finally to DBT-sulfone (DBTO2) through the addition of 2 oxygen atoms to the sulfur atom. DBT-sulfone monooxygenase (DszA) then carries out the next step in the pathway, producing 2-hydroxybiphenyl-2-sulfinic acid (HBPS) through addition of a final oxygen to the heteroatom. This causes cleavage of the chemical bonds at the sulfur, breaking the ring and converting the compound from a 3-ring structure to a 2-ring structure. HBPS is then converted to the final product of the 4S pathway by HBPS desulfinase (DszB), producing 2-HBP. At this point, the sulfur has been released from the hydrocarbon in the form of sulfite.. The first three steps of the 4S pathway require FMNH2 and subsequently reduces the reductive power of the cell. WIn order to regain this power an ...
Famili Alcaligenaceae *Genus Achromobacter. *Genus Alcaligenes. *Genus Bordetella. *Genus Pelistega. *Genus Sutterella ...
... is a genus of bacteria from the family of Alcaligenaceae. Parte, A.C. "Paenalcaligenes". www.bacterio.net. " ... nov., a new member of the family Alcaligenaceae". International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 7 ...
nov., a new member of the family Alcaligenaceae". International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 7 ...
The symbiotic bacterium belongs to Alcaligenaceae family of β-proteobacterium. Based on the 16S rRNA gene sequences, it is ...
... is a genus of bacteria from the family of Alcaligenaceae. Parte, A.C. "Azohydromonas". www.bacterio.net. " ...
nov., a member of the family Alcaligenaceae isolated from human faeces". Int J Syst Evol Microbiol. 59: 1793-7. Jul 2009. doi: ...
Alcaligenaceae Achromobacter Achromobacter piechaudii strain AIMST Nmie10 (N. mirabilis; Selangor, Malaysia; stem tissue) ...
It is a genus of nonfermenting bacteria (in the family Alcaligenaceae). Additionally, some strains of Alcaligenes are capable ... Gram-negative aerobe of the family Alcaligenaceae. This species is most commonly found in the alimentary tract as a harmless ...
nov., a member of the family Alcaligenaceae isolated from human faeces". International Journal of Systematic and Evolutionary ... was determined to be related most closely to the genus Sutterella and previously classified in the family Alcaligenaceae. In ... the similar biochemical potential in the Sutterella and Parasutterella genera different from other genera in the Alcaligenaceae ...
nov., a new member of the family Alcaligenaceae that degrades substituted salicylates". Int J Syst Evol Microbiol. 55: 1077-81 ...
... is a genus of the Alcaligenaceae of the order of the Burkholderiales. The cells are gram-negative, rod-shaped and ...
... is a genus of motile and nonmotile bacteria of the family Alcaligenaceae. Blümel, S.; Mark, B.; Busse, H. J.; ... nov., a novel member of the family Alcaligenaceae with the ability to decolorize azo dyes aerobically". International Journal ...
... is a genus of bacteria from the family of Alcaligenaceae with one known species (Orrella dioscoreae). "Orrella". www. ... nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis". Systematic and applied ...
Oligella is a genus of Gram-negative, aerobic bacteria from the family Alcaligenaceae. The Oligella genus includes at least 2 ...
... is a genus of Gram-negative oxidase-positive bacteria of the family Alcaligenaceae. LSPN bacterio.net IJSEM ...
... is a genus of bacteria, included in the family Alcaligenaceae in the order Burkholderiales. The cells are Gram- ...
... is a genus of Gram-negative, nitrogen-fixing bacteria from the family of Alcaligenaceae. LPSN bacterio.net Chen, W.-M.; ...
DNA-rRNA hybridization was used to place B. trematum LMG 13506T in the Alcaligenaceae family. Amplified ribosomal DNA ...
... is a genus of gram-negative, facultatively anaerobic, motile bacteria from the family of Alcaligenaceae. LPSN ...
... is a genus of bacteria of the family Alcaligenaceae with one known species (Pelistega europaea). LSPN terio.net ...
"A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis". BMC ...
nov., a novel member of the family Alcaligenaceae with the ability to decolorize azo dyes aerobically". Int J Syst Evol ...
... is a genus of Gram-negative, catalase-positive, oxidase-negative bacteria from the family of Alcaligenaceae. ...
Basilea is a genus of bacteria from the family of Alcaligenaceae with one known species (Basilea psittacipulmonis). Parte, A.C ...
... is a genus of bacteria from the family of Alcaligenaceae with one known species (Parapusillimonas granuli). ...
The Alcaligenaceae are a family of bacteria, included in the order Burkholderiales. Members are found in water, soil, animals ... "Alcaligenaceae". www.uniprot.org. Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.) (2005). Bergeys ... Alcaligenaceae". International Journal of Systematic Bacteriology. 36 (3): 405-414. doi:10.1099/00207713-36-3-405. " ...
Alcaligenaceae. 5. Achromobacter xylosoxidans (AF531768). 99.5% (AF394171). 99.5% (AF411021). Achromobacter xylosoxidans. (30) ...
Alcaligenaceae. 0.061. 0.044. +. 9. 2. 2. Acidobacteria. iii1-15 (O)c. 0.058. 0.048. +. 8. 2. 2. ...
The 16S rRNA gene sequence analysis revealed that strain CGII-59m2T belonged to the family Alcaligenaceae and shared the ... nov., a new member of the family Alcaligenaceae (Betaproteobacteria) isolated from activated sludge. International Journal of ...
Alcaligenaceae; Bordetella. OX NCBI_TaxID=257311 {ECO:0000313,Proteomes:UP000001421}; RN [1] {ECO:0000313,Proteomes:UP000001421 ...
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. OX NCBI_TaxID=360910; RN [0] ...
p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.,/p> ,p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.,/p> ,p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).,/p> ,p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x,sup>64,/sup> + x,sup>4,/sup> + x,sup>3,/sup> + x + 1. The algorithm is described in the ISO 3309 standard. ,/p> ,p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.,br /> ,strong>Cyclic redundancy and other checksums,/strong>,br /> ,a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993),/a>),/p> Checksum:i ...
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Achromobacter. OX NCBI_TaxID=762376; RN [0 ...
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. OX NCBI_TaxID=340100; RN [0] ...
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Taylorella. OX NCBI_TaxID=937774; RN [0] ...
Alcaligenaceae; Bordetella. OX NCBI_TaxID=257313; RN [0] RP -.; RG -.; RL -.; CC -!- SEQ. DATA ORIGIN: Translated from the ...
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. Data source. GenBank (Assembly:GCA_ ...
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Castellaniella. OX NCBI_TaxID=1437824 {ECO ...
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Candidimonas. OX NCBI_TaxID=658167 {ECO: ...
Alcaligenaceae; Bordetella. OX NCBI_TaxID=257313; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=Tohama I / ATCC BAA- ...
OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. OX NCBI_TaxID=103855 {ECO: ...
Alcaligenaceae English. Alcaligenaceae De Ley et al. 1986, Alcaligenaceae, Family Alcaligenaceae (organism), Family ... Ontology: Alcaligenaceae. (C1080715) Definition (NCI) A taxonomic family of bacterium in the phylum Proteobacteria that ... Alcaligenaceae: Achromobacter xylosoxidans. * Bartonella species. *B. bacilliformis (acute in Oroya Fever, chronic in Peruvian ... A genus of aerobic, Gram negative bacterium assigned to the phylum Proteobacteria and the family Alcaligenaceae. ...
However, in L. mirabilis (Burkholderiaceae) and A. faecalis (Alcaligenaceae), genome UnP was substituted by glutamyl-tRNA ... The Alcaligenaceae family cluster (Bootstrap Index, BI, 100%) included Achromobacter, Bordetella, and Alcaligenes species, and ... The Burkholderia species, L. mirabilis (Burkholderiaceae), and A. faecalis (Alcaligenaceae) have probably each independently ... Dark blue: Burkholderiaceae, blue: Ralstoniaceae, green: Alcaligenaceae, and grey: Pseudomonas aeruginosa. Operons schematic ...
Famili Alcaligenaceae *Genus Achromobacter. *Genus Alcaligenes. *Genus Bordetella. *Genus Pelistega. *Genus Sutterella ...
Alcaligenaceae]] , Genus = [[Bordetella]] , species = [[pertussis]] {, , height="10" bgcolor="#FFDF95" , NCBI: [http://www. ...
Family: Alcaligenaceae. Declared Pest, Prohibited - s12 (C1 Prohibited). Synonym: Haemophilus equigenitalis. Common name: ...
Lineage: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter; ...
Categories: Alcaligenaceae Image Types: Photo, Illustrations, Video, Color, Black&White, PublicDomain, CopyrightRestricted 51 ...
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. Industrial uses or economic ...
Paenalcaligenes is a genus of bacteria from the family of Alcaligenaceae. Parte, A.C. "Paenalcaligenes". www.bacterio.net. " ... nov., a new member of the family Alcaligenaceae". International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 7 ...