Alcaligenaceae
Betaproteobacteria
RNA, Ribosomal, 16S
Sequence Analysis, DNA
Sutterella stercoricanis sp. nov., isolated from canine faeces. (1/36)
Morphological, biochemical and molecular genetic studies were carried out on an unknown non-spore-forming, Gram-negative, rod-shaped bacterium which was isolated from dog faeces. The bacterium grew under anaerobic conditions, was asaccharolytic, resistant to 20 % (v/v) bile and was oxidase- and urease-negative. Phylogenetic analysis based on comparative 16S rRNA gene sequencing showed that the unidentified bacterium clustered with Sutterella wadsworthensis, although a sequence divergence of >5 % indicated that the bacterium from dog faeces represented a previously unrecognized subline within the genus. On the basis of the presented findings, a novel species, Sutterella stercoricanis sp. nov., is described. The type strain of Sutterella stercoricanis is 5BAC4T (= CCUG 47620T = CIP 108024T). (+info)Advenella incenata gen. nov., sp. nov., a novel member of the Alcaligenaceae, isolated from various clinical samples. (2/36)
A polyphasic taxonomic study of 14 isolates recovered from various human and veterinary clinical samples was performed. Phenotypically these isolates shared several characteristics with members of the Alcaligenaceae and related genera. Random amplified polymorphic DNA fingerprinting and whole-cell protein analysis suggested the presence of multiple genomic groups, which was confirmed by DNA-DNA hybridization experiments. 16S rRNA gene sequence analysis indicated that these isolates were related to the genera Pelistega, Taylorella, Oligella, Pigmentiphaga, Alcaligenes, Kerstersia, Achromobacter and Bordetella and belonged to the family Alcaligenaceae. Based on the results of the present study the organisms were classified in a novel genus, Advenella gen. nov. This genus comprises one named species, Advenella incenata sp. nov. (type strain LMG 22250T=CCUG 45225T) and five currently unnamed genomic species. The DNA G+C content of members of the novel genus Advenella is between 54.0 and 57.7 mol%. (+info)Pusillimonas noertemannii gen. nov., sp. nov., a new member of the family Alcaligenaceae that degrades substituted salicylates. (3/36)
The taxonomic position of a Pseudomonas-like strain, designated BN9(T), was investigated. This strain had previously been isolated as a 5-aminosalicylate-degrading organism from a 6-aminonaphthalene-2-sulphonate-degrading mixed bacterial culture. Previously, detection of ubiquinone Q-8, a polyamine pattern with putrescine, spermidine and 2-hydroxyputrescine as the major polyamines, and partial 16S rRNA gene sequencing had suggested that strain BN9(T) belongs to the 'Betaproteobacteria'. This was supported by sequencing the 16S rRNA gene, which demonstrated 94-96 % sequence similarity to different species of the genera Achromobacter, Alcaligenes and Bordetella, and suggested that strain BN9(T) represents a member of the family Alcaligenaceae. Different methods for the construction of phylogenetic dendrograms placed the strain separately from all other genera within the Alcaligenaceae. Fatty acid analysis demonstrated the presence of high concentrations of C(19 : 0) cyclo omega8c. On the basis of low 16S rRNA gene sequence similarity to other members of the Alcaligenaceae, fatty acid and polar lipid profiles, and other unique phenotypic properties of strain BN9(T), the creation of a new genus and species with the name Pusillimonas noertemannii gen. nov., sp. nov. is proposed. The type strain is BN9(T) (= DSM 10065(T) = NCIMB 14020(T)). (+info)Castellaniella gen. nov., to accommodate the phylogenetic lineage of Alcaligenes defragrans, and proposal of Castellaniella defragrans gen. nov., comb. nov. and Castellaniella denitrificans sp. nov. (4/36)
Comparative 16S rRNA gene sequence analysis indicates that two distinct sublineages exist within the genus Alcaligenes: the Alcaligenes faecalis lineage, comprising Alcaligenes aquatilis and A. faecalis (with the three subspecies A. faecalis subsp. faecalis, A. faecalis subsp. parafaecalis and A. faecalis subsp. phenolicus), and the Alcaligenes defragrans lineage, comprising A. defragrans. This phylogenetic discrimination is supported by phenotypic and chemotaxonomic differences. It is proposed that the A. defragrans lineage constitutes a distinct genus, for which the name Castellaniella gen. nov. is proposed. The type strain for Castellaniella defragrans gen. nov., comb. nov. is 54PinT (=CCUG 39790T = CIP 105602T = DSM 12141T). Finally, on the basis of data from the literature and new DNA-DNA hybridization and phenotypic data, the novel species Castellaniella denitrificans sp. nov. (type strain NKNTAUT = DSM 11046T = CCUG 39541T) is proposed for two strains previously identified as strains of A. defragrans. (+info)Tetrathiobacter mimigardefordensis sp. nov., isolated from compost, a betaproteobacterium capable of utilizing the organic disulfide 3,3'-dithiodipropionic acid. (5/36)
In this study, a novel betaproteobacterium, strain DPN7(T), was isolated under mesophilic conditions from compost because of its capacity to utilize the organic disulfide 3,3'-dithiodipropionic acid. Analysis of the 16S rRNA gene sequence of strain DPN7(T) revealed 98.5 % similarity to that of Tetrathiobacter kashmirensis LMG 22695(T). Values for sequence similarity to members of the genera Alcaligenes, Castellaniella and Taylorella, the nearest neighbours of the genus Tetrathiobacter, were about 95 % or less. The DNA G + C content of strain DPN7(T) was 55.1 mol%. The level of DNA-DNA hybridization between strain DPN7(T) and T. kashmirensis LMG 22695(T) was 41 %, whereas it was much lower between strain DPN7(T) and Alcaligenes faecalis LMG 1229(T) (7 %) or Castellaniella defragrans LMG 18538(T) (5 %). This genotypic divergence was supported by differences in biochemical and chemotaxonomic characteristics. For this reason, and because of the differences in the protein and fatty acid profiles, strain DPN7(T) should be classified within a novel species of Tetrathiobacter, for which the name Tetrathiobacter mimigardefordensis sp. nov. is proposed. The type strain is strain DPN7(T) (=DSM 17166(T) = LMG 22922(T)). (+info)Pigmentiphaga daeguensis sp. nov., isolated from wastewater of a dye works, and emended description of the genus Pigmentiphaga. (6/36)
A Gram-negative, non-spore-forming, rod-shaped Pigmentiphaga-like bacterial strain, K110(T), was isolated from wastewater collected from a dye works in Korea and was subjected to a polyphasic taxonomic analysis. Strain K110(T) grew optimally at pH 7.0--8.0 and 37 degrees C in the presence of 0.5 % (w/v) NaCl. It contained Q-8 as the predominant ubiquinone and C(16 : 0), cyclo C(17 : 0) and cyclo C(19 : 0)omega8c as the major fatty acids. The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine and two unidentified aminolipids. The DNA G+C content was 67.4 mol%. In a neighbour-joining phylogenetic tree constructed on the basis of 16S rRNA gene sequences, strain K110(T) joined Pigmentiphaga kullae, the sole species of the genus, at a bootstrap confidence level of 100 %. Strain K110(T) exhibited a 16S rRNA gene sequence similarity of 99.4 % with respect to the type strain of P. kullae. Although strain K110(T) was found to be similar to P. kullae in terms of phenotypic properties, it differed in terms of motility, polar lipids, DNA-DNA relatedness and repetitive extragenic palindromic PCR genomic fingerprinting patterns. On the basis of phenotypic, phylogenetic and genetic data, strain K110(T) represents a novel species of the genus Pigmentiphaga, for which the name Pigmentiphaga daeguensis sp. nov. is proposed. The type strain is K110(T) (=KCTC 12838(T)=JCM 14330(T)). (+info)Sutterella parvirubra sp. nov. and Megamonas funiformis sp. nov., isolated from human faeces. (7/36)
(+info)Novel pathway for catabolism of the organic sulfur compound 3,3'-dithiodipropionic acid via 3-mercaptopropionic acid and 3-Sulfinopropionic acid to propionyl-coenzyme A by the aerobic bacterium Tetrathiobacter mimigardefordensis strain DPN7. (8/36)
(+info)
Alcaligenaceae
The Alcaligenaceae are a family of bacteria, included in the order Burkholderiales. Members are found in water, soil, humans, ... "Taxonomy - Alcaligenaceae". UniProt. UniProt Consortium. Retrieved 16 January 2019. Garrity, George M.; Brenner, Don J.; Krieg ... "Alcaligenaceae". NCBI taxonomy. Bethesda, MD: National Center for Biotechnology Information. Retrieved 16 January 2019. " ... Alcaligenaceae". International Journal of Systematic Bacteriology. 36 (3): 405-414. doi:10.1099/00207713-36-3-405. " ...
Alcaligenes
It is a genus of non-fermenting bacteria (in the family Alcaligenaceae). Additionally, some strains of Alcaligenes are capable ... Austin, Brian (2014-01-01). "The Family Alcaligenaceae". In Rosenberg, Eugene; DeLong, Edward F.; Lory, Stephen; Stackebrandt, ... Gram-negative aerobe of the family Alcaligenaceae. This species is most commonly found in the alimentary tract as a harmless ...
Pusillimonas
It was formerly included in the family Alcaligenaceae. Page Genus: Pusillimonas on "LPSN - List of Prokaryotic names with ...
Paenalcaligenes
... is a genus of bacteria from the family of Alcaligenaceae. Parte, A.C. "Paenalcaligenes". LPSN. "Paenalcaligenes ... nov., a new member of the family Alcaligenaceae". International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 7 ...
Paenalcaligenes hominis
nov., a new member of the family Alcaligenaceae". International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 7 ...
Angomonas deanei
The symbiotic bacterium belongs to β-proteobacterium family Alcaligenaceae. Based on the 16S rRNA gene sequences, it is known ...
Taylorella equigenitalis
It is now classified as belonging to the Alcaligenaceae family. Taylorella equigenitalis is a Gram-negative bacterium, which ... Phylogeny of T. equigenitalis includes being part of the Alcaligenaceae family. Taylorella equigenitalis's distribution and ...
Azohydromonas
... is a genus of bacteria from the family of Alcaligenaceae. Parte, A.C. "Azohydromonas". LPSN. "Azohydromonas". www ...
Parasutterella excrementihominis
nov., a member of the family Alcaligenaceae isolated from human faeces". Int J Syst Evol Microbiol. 59 (Pt 7): 1793-7. doi: ...
List of Nepenthes endophyte species
Alcaligenaceae Achromobacter Achromobacter piechaudii strain AIMST Nmie10 (N. mirabilis; Selangor, Malaysia; stem tissue) ...
Candidimonas
... is a genus of bacteria from the family of Alcaligenaceae. Parte, A.C. "Candidimonas". LPSN. "Candidimonas". www. ...
Strigomonas culicis
... ß-proteobacterium of the family Alcaligenaceae. It is enclosed in two layers of cell membranes, and unlike typical bacterial ...
Paralcaligenes
... is a genus of bacteria from the family of Alcaligenaceae. Parte, A.C. "Paralcaligenes". LPSN. "Paralcaligenes ...
Parasutterella
nov., a member of the family Alcaligenaceae isolated from human faeces". International Journal of Systematic and Evolutionary ... was determined to be related most closely to the genus Sutterella and previously classified in the family Alcaligenaceae. In ... biochemical potential in the Sutterella and Parasutterella genera different from other genera in the family Alcaligenaceae.) To ...
Pusillimonas noertemannii
nov., a new member of the family Alcaligenaceae that degrades substituted salicylates". Int J Syst Evol Microbiol. 55 (3): 1077 ...
Pigmentiphaga
... is a genus of motile and nonmotile bacteria of the family Alcaligenaceae. Blümel, S.; Mark, B.; Busse, H. J.; ... nov., a novel member of the family Alcaligenaceae with the ability to decolorize azo dyes aerobically". International Journal ...
Orrella
... is a genus of bacteria from the family of Alcaligenaceae with one known species (Orrella dioscoreae). "Orrella". Www. ... nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis". Systematic and Applied ...
Oligella (bacterium)
Oligella is a genus of Gram-negative, aerobic bacteria from the family Alcaligenaceae. The genus Oligella includes at least 2 ...
Achromobacter
... is a genus of bacteria, included in the family Alcaligenaceae in the order Burkholderiales. The cells are Gram- ...
Derxia
... is a genus of Gram-negative, nitrogen-fixing bacteria from the family of Alcaligenaceae. "LPSN LPSN". Retrieved 2013-08- ...
Bordetella trematum
DNA-rRNA hybridization was used to place B. trematum LMG 13506T in the family Alcaligenaceae. Amplified ribosomal DNA ...
Castellaniella
... is a genus of gram-negative, facultatively anaerobic, motile bacteria from the family of Alcaligenaceae. " ...
Pelistega
... is a genus of bacteria of the family Alcaligenaceae with one known species (Pelistega europaea). LSPN terio.net ...
Basilea psittacipulmonis
"A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis". BMC ...
Pigmentiphaga kullae
nov., a novel member of the family Alcaligenaceae with the ability to decolorize azo dyes aerobically". Int J Syst Evol ...
Kerstersia
... is a genus of Gram-negative, catalase-positive, oxidase-negative bacteria from the family of Alcaligenaceae. lpsn. ...
Basilea (bacterium)
Basilea is a genus of bacteria from the family of Alcaligenaceae with one known species (Basilea psittacipulmonis). Parte, A.C ...
Parapusillimonas
... is a genus of bacteria from the family of Alcaligenaceae with one known species (Parapusillimonas granuli). ...
Saccharedens
... is a sugar-degrading genus of bacteria from the family of Alcaligenaceae with one known species (Saccharedens ...
Sutterella
proposed the reclassification of the closely related Sutterella and Parasutterella genera from Alcaligenaceae to a new and ...
Defining the role of Parasutterella, a previously uncharacterized member of the core gut microbiota | The ISME Journal
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Name Taxonomy in SILVA v123
Alcaligenaceae;MWH-UniP1_aquatic_group RSV_genus984 Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Alcaligenaceae; ... Alcaligenaceae;GKS98_freshwater_group RSV_genus982 Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Alcaligenaceae; ... Alcaligenaceae;Advenella RSV_genus978 Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Alcaligenaceae;Alcaligenes RSV ... Alcaligenaceae;Parasutterella RSV_genus988 Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Alcaligenaceae;Pelistega ...
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Kerstersia gyiorum
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Oligella ureolytica Bacteremia in Elderly Woman, United States
Title : Human Infection with Rickettsia sp. related to R. japonica, Thailand Personal Author(s) : Gaywee, Jariyanart;Sunyakumthorn, Piyanate;Rodkvamtook, Wuttikon;Ruang-areerate, Toon;Mason, Carl Jeffries;Sirisopana, Narongrid; Published Date : Apr 2007 Source : Emerg Infect Dis. 13(4):657-659. URL : https://stacks.cdc.gov/view/cdc/16374 ...
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Intestinal microbiota assessment in cirrhotic patients from a Mexican mestizo population | Revista de Gastroenterología de...
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Exposures Related to House Dust Microbiota in a U.S. Farming Population | Environmental Health Perspectives | Vol. 126, No. 6
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Bloodstream infection with Oligella ureolytica in a newborn infant: a case report and review of the literature - PubMed
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Alcaligenaceae Preferred Term Term UI T525213. Date11/04/2002. LexicalTag NON. ThesaurusID NLM (2004). ... Alcaligenaceae Preferred Concept UI. M0441353. Registry Number. txid506. Scope Note. A family of gram-negative, aerobic, non- ... Alcaligenaceae. Tree Number(s). B03.440.400.425.115. B03.660.075.090.344. Unique ID. D042401. RDF Unique Identifier. http://id. ...
MeSH Browser
Alcaligenaceae Preferred Term Term UI T525213. Date11/04/2002. LexicalTag NON. ThesaurusID NLM (2004). ... Alcaligenaceae Preferred Concept UI. M0441353. Registry Number. txid506. Scope Note. A family of gram-negative, aerobic, non- ... Alcaligenaceae. Tree Number(s). B03.440.400.425.115. B03.660.075.090.344. Unique ID. D042401. RDF Unique Identifier. http://id. ...