SynthetaseMetabolismHistidineSynthaseTryptophan biosynthesisLigaseSubunitBile acid biosynthesisTerpenoid-quinone biosynthesisEnzymeSynthesisRibosomeEnzymesMethionineArginineNucleotideDehydrogenaseFattyRibosomal proteinsEscherichiaAdaptorGeneticFamily proteinMitochondrialTranscriptionPathwaysGeneAmino acidPeptideHypothetical proteinDehydrataseProlineTherapeutic proteinsRegulationGenesLipidsMacromoleculesRecombinantInterproscanInitiationRibonucleaseFunctionalMembraneAcceptorDegradation
Synthetase11
- Aspartyl-tRNA synthetase, cytoplasmic is an enzyme that in humans is encoded by the DARS gene. (wikipedia.org)
- Aspartyl-tRNA synthetase (DARS) is part of a multienzyme complex of aminoacyl-tRNA synthetases. (wikipedia.org)
- Aspartyl-tRNA synthetase charges its cognate tRNA with aspartate during protein biosynthesis. (wikipedia.org)
- Structural analysis of the high molecular mass aminoacyl-tRNA synthetase complex. (wikipedia.org)
- Expression of human aspartyl-tRNA synthetase in Escherichia coli. (wikipedia.org)
- Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding [Interproscan]. (ntu.edu.sg)
- Serine-tRNA synthetase, type1, N-terminal [Interproscan]. (ntu.edu.sg)
- Aminoacyl-tRNA synthetase, class II (D/K/N) [Interproscan]. (ntu.edu.sg)
- 4560 valyl-tRNA synthetase CP001857 CDS Arcpr_0004 4868. (go.jp)
- 55056) tyrosyl-tRNA synthetase CP001857 CDS Arcpr_0065 complement(55112. (go.jp)
- tRNA synthetase class II core domain (G, Seryl-tRNA synthetase N-terminal domain [Interproscan]. (ntu.edu.sg)
Metabolism6
- Many proteins are enzymes that catalyze the chemical reactions in metabolism. (wikipedia.org)
- The encoded protein shares a high degree of homology to clostridial FMN- and FAD-dependent 2-enoate reductases, including the cinnamic acid reductase proposed to be involved in amino acid metabolism in proteolytic clostridia. (microbiologyresearch.org)
- 1 L/d of drinking water was associated with concurrent changes in carbohydrate, protein, lipid, and micronutrient metabolism, a metabolomic pattern of carbohydrate oxidation via the tricarboxylic acid (TCA) cycle, instead of glycolysis to lactate, and a reduction of chronic disease risk factors in Week 6. (ppexmed.com)
- Reconstructed carbon and sulfur metabolic pathways, coupled with RNA-Seq analysis, suggested a marginal Crabtree effect under high glucose and activation of sulfur metabolism toward methionine biosynthesis under sulfur limitation in this yeast. (biomedcentral.com)
- Alanine, aspartate and glutamate metabolism 21 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
- Methylases are present at the level of DNA metabolism, RNA metabolism and protein post-translational modifications [ 2 - 4 ]. (biomedcentral.com)
Histidine1
- Histidine biosynthesis HisG, C-terminal [Interproscan]. (ntu.edu.sg)
Synthase1
- 38678) Cobalamin-independent synthase MetE domain protein CP001857 CDS Arcpr_0044 complement(38683. (go.jp)
Tryptophan biosynthesis1
- Phenylalanine, tyrosine and tryptophan biosynthesis 31 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
Ligase1
- Glycine-tRNA ligase, alpha subunit [Interproscan]. (ntu.edu.sg)
Subunit3
- protein_coding" "Cz12g19130.t1","No alias","Chromochloris zofingiensis","Clp protease proteolytic subunit /Translocation-enhancing protein TepA [Interproscan]. (ntu.edu.sg)
- protein_coding" "AAC73960","hcp","Escherichia coli","hybrid-cluster [4Fe-2S-2O] subunit of anaerobic terminal reductases [Ensembl]. (ntu.edu.sg)
- In a hmo1 Δ (high mobility group family 1-deleted) yeast strain, deletion of FPR1 induced severe growth defects, which could be alleviated by increasing the copy number of RPL25 (ribosome protein of the large subunit 25), suggesting that RPL25 expression was affected in hmo1 Δ fpr1 Δ cells. (prolekarniky.cz)
Bile acid biosynthesis1
- Primary bile acid biosynthesis 13 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
Terpenoid-quinone biosynthesis1
- Ubiquinone and other terpenoid-quinone biosynthesis 14 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
Enzyme9
- Despite this huge amount of data and the profusion of bioinformatic methods for function prediction, a large part of known enzyme activities is still lacking an associated protein sequence. (biomedcentral.com)
- Finally, by studying relation between protein domains and catalyzed activities, it appears that newly discovered enzymes are mostly associated with already known enzyme domains. (biomedcentral.com)
- We conclude this review with a presentation of recent initiatives in finding proteins for orphan enzymes and in extending the enzyme world by the discovery of new activities. (biomedcentral.com)
- The same year, Peter Karp proposed an enzyme genomic initiative to associate at least one protein sequence for every biochemically characterized enzymatic activity [ 8 ]. (biomedcentral.com)
- Irreversible inhibitors are generally specific for one class of enzyme and do not inactivate all proteins. (bcl2signaling.com)
- To date, research has been focussed primarily on Old Yellow Enzyme-like proteins, due to their ease of handling, whereas 2-enoate reductases from clostridia have received much less attention, because of their oxygen sensitivity and a lack of suitable expression systems. (microbiologyresearch.org)
- protein_coding" "AAC74888","manY","Escherichia coli","mannose-specific enzyme IIC component of PTS [Ensembl]. (ntu.edu.sg)
- This download is the types and cells led from a human assembly target content soccer methylated alongside the set of two interaction localizing enzyme proteins in New Zealand. (evakoch.com)
- The first, ubiquitous, enzyme of the pathway, MtnA (methylthioribose-1-phosphate isomerase), belongs to a family of proteins related to eukaryotic intiation factor 2B alpha. (biomedcentral.com)
Synthesis4
- Synthesis of pyrimidine ring from aspartate and carbamoyl phosphate. (unizg.hr)
- or anabolic - the building up (synthesis) of compounds (such as proteins, carbohydrates, lipids, and nucleic acids). (wikipedia.org)
- Transgenes can be designed in silico , assembled from validated DNA parts and inserted at precise and predetermined locations within the chloroplast genome to give stable synthesis of a desired recombinant protein. (microbiologyresearch.org)
- Moreover, protein synthesis by the cytosolic ribosomes of eukaryotes does not involve the formylation of N-terminal Met. (microbialcell.com)
Ribosome1
- 1. Warner JR. The economics of ribosome biosynthesis in yeast. (prolekarniky.cz)
Enzymes3
- To estimate if candidate proteins for local orphans could be retrieved by homology search, we applied a simple strategy based on the PRIAM software and noticed that candidates may be proposed for an important fraction of local orphan enzymes. (biomedcentral.com)
- Fe-S clusters are present in more than 300 different types of enzymes or proteins and play crucial roles in fundamental life processes such as respiration, photosynthesis and nitrogen fixation. (uga.edu)
- protein_coding" "AAC74185","ptsG","Escherichia coli","fused glucose-specific PTS enzymes: IIB component/IIC component [Ensembl]. (ntu.edu.sg)
Methionine2
- Starting with a degron: N-terminal formyl-methionine of nascent bacterial proteins contributes to their proteolytic control. (microbialcell.com)
- In bacteria, all nascent proteins bear the pretranslationally formed N-terminal formyl-methionine (fMet) residue. (microbialcell.com)
Arginine1
- Arginine biosynthesis 17 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
Nucleotide1
- 17.Nucleotide biosynthesis. (unizg.hr)
Dehydrogenase1
- protein_coding" "AAC74323","adhE","Escherichia coli","fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase [Ensembl]. (ntu.edu.sg)
Fatty1
- Fatty acid biosynthesis 8 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
Ribosomal proteins2
- Plastid-specific ribosomal proteins (PSRPs) have been proposed to play roles in the light-dependent regulation of chloroplast translation. (cipsm.de)
- A new system for naming ribosomal proteins. (prolekarniky.cz)
Escherichia4
- protein_coding" "AAC74319","hns","Escherichia coli","global DNA-binding transcriptional dual regulator H-NS [Ensembl]. (ntu.edu.sg)
- The codon table used was the FreqB table from " Design Parameters to Control Synthetic Gene Expression in Escherichia coli ", which was used because it was shown to express proteins well and was recommended to us by JCVI. (freegenes.org)
- protein_coding" "AAC74850","yeaD","Escherichia coli","D-hexose-6-phosphate epimerase-like protein [Ensembl]. (ntu.edu.sg)
- Here we demonstrate that PSRP1 is not a bona fide ribosomal protein, but rather a functional homologue of the Escherichia coli cold-shock protein pY. (cipsm.de)
Adaptor1
- Adaptor role of tRNA. (unizg.hr)
Genetic1
- There are many possible applications for these genes: you could try to recreate essential gene pathways in-vitro, or purify the proteins for functional studies, or create a synthetic MoClo-compatible Bacillus subtilis genome using these genes and the sgRNAs available from the Bacillus Genetic Stock Center. (freegenes.org)
Family protein4
Mitochondrial1
Transcription3
- 40535) Transcription factor TFIIB cyclin-related protein CP001857 CDS Arcpr_0047 complement(40887. (go.jp)
- Below is a small sample of the many proteins, growth factors, transcription factors it contains. (plurisomes.com)
- The heterochromatin-enriched HP1 proteins play a critical role in regulation of transcription. (cipsm.de)
Pathways5
- Steroid biosynthesis 12 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
- N-Glycan biosynthesis 39 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
- Mucin type O-glycan biosynthesis 40 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
- Various types of N-glycan biosynthesis 41 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
- Mannose type O-glycan biosynthesis 42 of 317 pathways' ## [1] 'Querying. (tu-dortmund.de)
Gene2
- The promoter of the AOX1 gene has become a popular tool to drive the expression of recombinant proteins. (biomedcentral.com)
- In the current study, extensive chromatin immunoprecipitation (ChIP) and ChIP-sequencing analyses revealed that Fpr1 associates specifically with the upstream activating sequences of nearly all RPG (ribosomal protein gene) promoters, presumably in a manner dependent on Rap1 (repressor/activator site binding protein 1). (prolekarniky.cz)
Amino acid2
- 15.Protein turnover and amino acid catabolism. (unizg.hr)
- We sequenced the worm's ~ 688-Mb haploid genome with an overall completeness of ~ 95% and discovered that L. luymesi lacks many genes essential in amino acid biosynthesis, obligating them to products provided by symbionts. (biomedcentral.com)
Peptide2
- Proteins are made of amino acids arranged in a linear chain joined by peptide bonds. (wikipedia.org)
- Neurofascin has an P450 response liver tumor signal formation been in protein effectiveness filling and view peptide during exogenous stage. (familie-vos.de)
Hypothetical protein15
- 9766 conserved hypothetical protein CP001857 CDS Arcpr_0009 complement(9767. (go.jp)
- 10378) hypothetical protein CP001857 CDS Arcpr_0010 complement(10422. (go.jp)
- 13428) hypothetical protein CP001857 CDS Arcpr_0013 complement(13425. (go.jp)
- 13751) hypothetical protein CP001857 CDS Arcpr_0014 complement(13789. (go.jp)
- 19702 hypothetical protein CP001857 CDS Arcpr_0022 complement(19723. (go.jp)
- 21298 hypothetical protein CP001857 CDS Arcpr_0025 complement(21287. (go.jp)
- 23242 hypothetical protein CP001857 CDS Arcpr_0028 23232. (go.jp)
- 29158) hypothetical protein CP001857 CDS Arcpr_0035 complement(29143. (go.jp)
- 29526) hypothetical protein CP001857 CDS Arcpr_0036 29596. (go.jp)
- 36678) hypothetical protein CP001857 CDS Arcpr_0042 complement(36769. (go.jp)
- 42520) hypothetical protein CP001857 tRNA Arcpr_R0002 complement(42639. (go.jp)
- 43572) hypothetical protein CP001857 CDS Arcpr_0052 43655. (go.jp)
- 47353) hypothetical protein CP001857 CDS Arcpr_0058 complement(47350. (go.jp)
- 52977 conserved hypothetical protein CP001857 CDS Arcpr_0062 complement(52960. (go.jp)
- 53727) hypothetical protein CP001857 CDS Arcpr_0063 complement(53793. (go.jp)
Dehydratase1
- protein_coding" "Cz05g31090.t1","No alias","Chromochloris zofingiensis","Pterin 4 alpha carbinolamine dehydratase [Interproscan]. (ntu.edu.sg)
Proline1
- Fpr1 (FK506-sensitive proline rotamase 1 ) , a protein of the FKBP12 (FK506-binding protein 12 kDa) family in Saccharomyces cerevisiae , is a primary target for the immunosuppressive agents FK506 and rapamycin. (prolekarniky.cz)
Therapeutic proteins3
- Numerous recent examples of different therapeutic proteins produced successfully in the C. reinhardtii chloroplast highlight the potential of this green alga as a simple, low-cost and benign host. (microbiologyresearch.org)
- In this paper we review the current status of algal chloroplast engineering with respect to therapeutic proteins. (microbiologyresearch.org)
- Over the last few decades the methylotrophic yeast Pichia pastoris has become a popular host for a wide range of products such as vaccines and therapeutic proteins. (biomedcentral.com)
Regulation2
- Degradations of proteins to amino acids and regulation. (unizg.hr)
- Regulation of biosynthesis. (unizg.hr)
Genes1
- Virulence genotype analysis revealed that strain CR1 lacked hemolytic phospholipase C and D, three genes for LPS biosynthesis and had reduced antibiotic resistance genes when compared with clinical strains. (frontiersin.org)
Macromolecules1
- These biochemicals can be joined to make polymers such as DNA and proteins, essential macromolecules of life. (wikipedia.org)
Recombinant1
- Methoxine incorporation in recombinant proteins is likely to occur when an excess of methanol is present during fermentation but can be avoided when the methanol feed rate protocol is carefully designed. (biomedcentral.com)
Interproscan14
- protein_coding" "Cz06g21140.t1","No alias","Chromochloris zofingiensis","Aldose 1-/Glucose-6-phosphate 1-epimerase [Interproscan]. (ntu.edu.sg)
- protein_coding" "Cz10g14210.t1","No alias","Chromochloris zofingiensis","DEAD/DEAH box helicase domain [Interproscan]. (ntu.edu.sg)
- Ribosomal protein S20 [Interproscan]. (ntu.edu.sg)
- Bor protein [Interproscan]. (ntu.edu.sg)
- Protein of unknown function (DUF1158) [Interproscan]. (ntu.edu.sg)
- Protein of unknown function (DUF2526) [Interproscan]. (ntu.edu.sg)
- Ribosomal protein L35 [Interproscan]. (ntu.edu.sg)
- Protein of unknown function (DUF441) [Interproscan]. (ntu.edu.sg)
- LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan]. (ntu.edu.sg)
- YebO-like protein [Interproscan]. (ntu.edu.sg)
- Protein of unknown function (DUF2511) [Interproscan]. (ntu.edu.sg)
- Copper resistance protein D [Interproscan]. (ntu.edu.sg)
- Protein of unknown function (DUF520) [Interproscan]. (ntu.edu.sg)
- Enoyl-(Acyl carrier protein) reductase [Interproscan]. (ntu.edu.sg)
Initiation1
- 1251 orc1%2Fcdc6 family replication initiation protein CP001857 CDS Arcpr_0002 1251. (go.jp)
Ribonuclease1
- 16508 ribonuclease HII CP001857 tRNA Arcpr_R0001 16547. (go.jp)
Functional1
- This shortcoming illustrates our limited knowledge of the functional diversity in the protein world and restricts the analyses of an organism starting from its genome. (biomedcentral.com)
Membrane2
- Neurofascin facilitates in severe membrane with NrCAM and is accounting pol in malate-aspartate cycle modifications. (familie-vos.de)
- The trimeric Sec61/SecY complex is a protein-conducting channel (PCC) for secretory and membrane proteins. (cipsm.de)
Acceptor1
- Research on Fe-S cluster biosynthesis in the Johnson group currently involves investigating the molecular mechanisms of Fe-S cluster assembly on scaffold proteins and the subsequent intact cluster transfer to acceptor or carrier proteins. (uga.edu)
Degradation1
- We addressed this hypothesis about fMet‑based degradation signals, termed fMet/N-degrons, using specific E. coli mutants, pulse-chase degradation assays, and protein reporters whose deformylation was altered, through site-directed mutagenesis, to be either rapid or relatively slow. (microbialcell.com)