Public Health GDisease resistance in cucurbit crops2017GenomicFunctional genomicsCOVID-19 ResponseAnnotationPhenX ToolkitGATKPathogenBioinformaticsGeneticsChief Scientific OfficerBiologyMolecular toolkit2016ComparativeCrop ImprovementSequencingGeneticWorkshopRevolutionStrategiesResearchAdvancesDefenseHealthCloudDataToolsProteinPatientSpeciesCollaborationUniversityResourcesPlatformCancer
Public Health G5
- Announcing New Tier 1 CDC Public Health Genomics Toolkit and Video Resources Impact… Scalability… Innovation… Evidence-based interventions… Surveillance and evaluation… Partnerships… Timely information to health care, the public, and decision makers… Commitment… These elements are crucial to any public health accomplishment and are recurring themes in 2 new public health genomics resources. (cdc.gov)
- In the realm of public health genomics, knowing your family history and use of appropriate genetic testing can also reduce morbidity and mortality from chronic diseases such as BRCA1/2 associated hereditary breast/ovarian cancer, Lynch syndrome and familial hypercholesterolemia. (cdc.gov)
- Those working in public health genomics can learn from other chronic disease programs about ways to change the context and make healthy choices easy for Americans - to reach the greatest number of people at risk and have the largest health impact. (cdc.gov)
- Muin Khoury, MD, PhD, Director of the Office of Public Health Genomics (OPHG) set the stage for the meeting. (cdc.gov)
- Using the CDC`s winnable battles concept as a model, the OPHG has classified public health genomics applications into Tiers I, II and III to help those working in states and localities to begin working on evidence-based interventions that can save lives now. (cdc.gov)
Disease resistance in cucurbit crops3
- The U.S. cucurbit community has initiated a USDA-SCRI funded cucurbit genomics project, CucCAP: Leveraging applied genomics to increase disease resistance in cucurbit crops. (usda.gov)
- R. Grumet is also the lead PI for the USDA-SCRI CucCAP project: CucCAP: Leveraging applied genomics to increase disease resistance in cucurbit crops ( https://cuccap.org/ ). (msu.edu)
- The CucCAP project: leveraging applied genomics to improve disease resistance in cucurbit crops. (msu.edu)
20172
- September 19, 2017 - Nurses and other health professionals looking to integrate genomics into patient care now have access to an online toolkit with more than 100 resources. (genome.gov)
- Health Genomics, 2012 - 2017 and the need to focus on evidence-based interventions that can reduce morbidity and mortality due to chronic diseases. (cdc.gov)
Genomic9
- Hayley Yaglom reviewed content for the CDC SARS-CoV-2 Genomic Epidemiology Toolkit and provided feedback. (cdc.gov)
- As a One Health Genomics Epidemiologist, Ms. Yaglom helps characterize the genomic epidemiology of SARS-CoV-2 for the state of Arizona and serves as partner liaison for TGen's Clinical Laboratory. (cdc.gov)
- It is a pleasure to have the opportunity to contribute to this COVID-19 Genomic Epidemiology Toolkit while showcasing the extensive work of the Arizona COVID-19 Genomics Union (ACGU) concerning SARS-CoV-2 sequencing in Arizona. (cdc.gov)
- OAMD recruited a group of scientists from CDC and state and local health departments to develop the COVID-19 Genomic Epidemiology Toolkit. (cdc.gov)
- Tute Genomics is a genomics startup that provides a cloud-based web application for rapid and accurate annotation of human genomic data. (wikipedia.org)
- Genomic and phenomic data and bioinformatic tools will be publicly available through the International Cucurbit Genomics Initiative (ICuGI) website, along with workshops and webinars to facilitate use. (usda.gov)
- With the rise of personalized medicine, and rapid advances in genomic sequencing technology and diagnostic testing, healthcare providers and consumers have an increased need for accurate information about genetic testing, genomics, and heritable conditions. (csms.org)
- A grant from the National Human Genome Research Institute will enable RTI International to enhance genomic research through its no-cost PhenX Toolkit. (wraltechwire.com)
- Scientists and clinicians continuously make tradeoffs between the breadth, depth, and frequency of genomic information they collect," Doron Lipson, Chief Scientific Officer of Ultima Genomics explains. (generalatlantic.com)
Functional genomics8
- Cucurbit genomics database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops. (msu.edu)
- The IBM Functional Genomics Platform (formerly named OMXWare) is a relational database linking genotype to phenotype for over 300M biological sequences extracted from microbial genomes. (ibm.com)
- All of these biological entities are then linked in the Functional Genomics Platform. (ibm.com)
- The IBM Functional Genomics Platform provides a developer toolkit consisting of REST Services, Python SDK, and a Docker container to help researchers analyze this vast data repository at scale. (ibm.com)
- Important applications can be built on top of the Functional Genomics Platform including services to annotate biological function in the microbiome, predict antimicrobial resistance (AMR), develop molecular targets for health interventions, or to expand our fundamental knowledge of microbial life. (ibm.com)
- Today the IBM Functional Genomics Platform has approximately 220,000 high quality bacterial and viral genomes, 64 million unique genes, 50 million unique proteins, and over 220 million unique protein domains. (ibm.com)
- Please note: If you are still using the old url ( https://s2s-omxware.us-south.containers.appdomain.cloud/ ) for the IBM Functional Genomics Platform, the url has changed to https://fgp.res.ibm.com/ . (ibm.com)
- If you are using https://ibm.biz/functional-genomics for your bookmarks, no change is necessary. (ibm.com)
COVID-19 Response1
Annotation2
- Also, Brigham Young University selected the Tute Genomics genome annotation and discovery platform for analysis and interpretation of 1,000 exomes and genomes. (wikipedia.org)
- The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology. (openwetware.org)
PhenX Toolkit2
- The PhenX Toolkit uses cookies to offer you the best experience online. (phenxtoolkit.org)
- The PhenX Toolkit is a great resource for investigators who would like to strategically expand their study design by adding a few standard measures," Hamilton said. (wraltechwire.com)
GATK3
- GATK, or the Genome Analysis Toolkit, is a widely used software package developed at the Broad Institute, USA, to perform variant discovery analysis on high-throughput sequencing data. (melbournebioinformatics.org.au)
- This blog post focuses on GATK, a popular genome analysis toolkit with essential utilities and command lines for genome analysis. (ibm.com)
- Data from over 200 whole human genomes, generated at the Broad Institute of MIT and Harvard, which was the company's first early access site, in addition to a co-developed update to Broad's open-sourced GATK toolkit and the first demonstration of single cell RNA-seq methodologies from Joshua Levin and Aviv Regev, will be shared at AGBT. (generalatlantic.com)
Pathogen2
Bioinformatics3
- Staff from EMBL Australia Bioinformatics Resource (BRAEMBL) set up virtual machines equipped with an array of tools and software so the workshop would run smoothly on the Genomics Virtual Laboratory. (melbournebioinformatics.org.au)
- Studies focused on cancer, in particular using genomics and bioinformatics approaches. (senescence.info)
- This award gives the PhenX team the opportunity to address the evolving needs of the scientific community by enhancing the content and features of the Toolkit," said Carol Hamilton, who is director of bioinformatics at RTI and the PhenX principal investigator. (wraltechwire.com)
Genetics2
- The Patient Toolkit produced by Queensland Genomics aims to ensure families are given accurate information about genetic testing and the different genetics services across the state. (genomicsinfo.org.au)
- 2014 In March 2014, the company announced that Affiliated Genetics, a Utah-based CLIA-certified laboratory, selected Tute Genomics for its next-generation sequencing (NGS) analytics pipeline. (wikipedia.org)
Chief Scientific Officer1
- 2015 Tute recruits David Mittelman, founder of Arpeggi, Inc. and former CSO at FamilyTreeDNA, to Tute Genomics as Chief Scientific Officer. (wikipedia.org)
Biology2
- The pro-ject addresses one of the most puzzling questions of evolutionary developmental biology and genomics: What is the role of non-conserved taxonomically restricted genes (TRGs, a.k.a. or-phan genes) in animal development? (muni.cz)
- DNA is nature's storage media and the instruction set for every living organism, yet with current technologies, we can't access that information at the scale needed to truly understand complex biology" said Gilad Almogy, Ultima Genomics' founder and Chief Executive Officer. (generalatlantic.com)
Molecular toolkit1
- How do they complement the conserved molecular toolkit of Metazoa? (muni.cz)
20161
- Tute Genomics was acquired by PierianDX in 2016. (wikipedia.org)
Comparative1
- Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 2010, 5(2):116-23. (openwetware.org)
Crop Improvement1
- Within crop genomics, advances relevant to crop improvement have primarily been in marker (e.g. (biomedcentral.com)
Sequencing5
- Crop genomics has seen dramatic advances in recent years due to improvements in sequencing technology, assembly methods, and computational resources. (biomedcentral.com)
- Today Ultima Genomics emerged from stealth mode with a new high-throughput, low-cost sequencing platform that seeks to deliver the $100 genome. (generalatlantic.com)
- Over the last five years, Ultima Genomics strived to develop a fundamentally new sequencing architecture designed to scale beyond conventional approaches, including completely different approaches to flow cell engineering, sequencing chemistry, and machine learning. (generalatlantic.com)
- Ultima Genomics' architecture seeks to revolutionize sequencing and take what we can do to a whole new level," said Michael Snyder, Director of the Center for Genomics and Personalized Medicine at Stanford University. (generalatlantic.com)
- We have seen the quality of Ultima Genomics sequencing in millions of single cells, and now are initiating even larger experiments that weren't previously feasible. (generalatlantic.com)
Genetic1
- The toolkit walks you through relevant genetic concepts, the types of genetic tests available, locations of genetic services in Queensland, and the pathways patients commonly go through when receiving care. (genomicsinfo.org.au)
Workshop5
- A new 3-day Cancer Genomics workshop was run in the Melbourne biomedical precinct, after its successful Canberra rollout in late 2015. (melbournebioinformatics.org.au)
- This workshop was followed by a specialist Cancer Genomics workshop that was attended by 17 researchers already working in the field, many of them from Peter MacCallum Cancer Centre. (melbournebioinformatics.org.au)
- The workshop provides an introduction to cancer genomics analytical pipelines for single nucleotide variations (SNV), copy number variations (CNV) and structural variations (SV) using a mixture of lectures, hands-on practical sessions and open discussions, and will be run in other states in the future. (melbournebioinformatics.org.au)
- In this workshop we will first cover the most used Linux commands, followed by a short introduction to several popular command-line tools that were especially developed for genomics as well as file formats commonly used in genomics (BED, FASTA, FASTQ, GFF/GTF, SAM/BAM, VCF). (genetics.org.uk)
- Schubauer-Berigan MK, Richardson DB, Fox MP, Fritschi L, Guseva Canu I, Pearce N, Stayner LT, Berrington de Gonzalez A. IARC-NCI Workshop on an epidemiological toolkit to assess biases in human cancer studies for hazard identification: beyond the algorithm. (who.int)
Strategies1
- ITU National eHealth toolkit bringing the total number of Member States with eHealth strategies to Twenty six. (who.int)
Research4
- Enter your email address to receive updates about the latest advances in genomics research. (genome.gov)
- Software for ageing research, including the Ageing Research Computational Tools (ARCT) perl toolkit. (senescence.info)
- The online suite of tools designed to boost collaborative work in genomics and biomedical research will be expanded to support Chinese and Spanish translations as part of the four-year project. (wraltechwire.com)
- Ultima's goal is to unleash a new era in genomics-driven research and healthcare, and it has secured approximately $600 million in backing from leading investors who share this vision. (generalatlantic.com)
Advances1
- Here, we review advances in crop genomics and how utilization of these tools is shifting in light of pan-genomes that are becoming available for many crop species. (biomedcentral.com)
Defense1
- Plant genomics is a potentially powerful defense against this looming threat. (taylorfrancis.com)
Health4
- The Public Health Impact of COVID-19: Why Host Genomics? (cdc.gov)
- In May 2014, the company announced joining the Global Alliance for Genomics and Health. (wikipedia.org)
- The WHO-approved DHIS2 Health Data Toolkit provides a digital set of tools to support adoption of WHO routine health data standards into the national routine health information system. (who.int)
- Given the need to incorporate developing areas such as the use of advanced computing sciences particularly in the fields of big data, genomics and artificial intelligence, the term "digital health" is gaining wide use. (who.int)
Cloud2
- These characteristics of genomics show typical data analytics matching to on-demand availability of computation and storage, a well-known feature of the cloud. (ibm.com)
- Our extension leverages OpenShift as the job dispatcher for genomics workflows, assuming cloud object storage is mounted in a cluster. (ibm.com)
Data2
- In June 2014, Advanced Biological Laboratories (ABL), S.A., announced a licensing and collaboration agreement with Tute Genomics and the commercial launch of OncoChek for managing and analysing genomics data in the field of oncology. (wikipedia.org)
- Typical genomics workflows start from data preprocessing and eventually step into the variant discovery of input datasets with parallelization. (ibm.com)
Tools1
- Linux is particularly suited to working with such files, and is therefore arguably one of the most important tools in a bioinformatician's toolkit. (genetics.org.uk)
Protein1
- Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein", PLOS ONE , vol. 8, 2013, : e57487. (uni-bielefeld.de)
Patient2
- As a patient or a family affected by rare disease, this toolkit has valuable information which can allow you to find support for you and your family. (genomicsinfo.org.au)
- The patient toolkit was suggested by Gary Hondow, a Consumer Advocate and member of the Queensland Genomics Community Advisory Group. (genomicsinfo.org.au)
Species2
- The study of structural variation within species and the characterization of the pan-genome has revealed extensive genome content variation among individuals within a species that is paradigm shifting to crop genomics and improvement. (biomedcentral.com)
- The Rhodoexplorer Platform for Red Algal Genomics and Whole Genome Assemblies for Several Gracilaria Species. (sb-roscoff.fr)
Collaboration1
- Whole genome methylation landscape of pre-cancerous tissues, generated in collaboration with Michael Snyder's lab at the Center for Genomics and Personalized Medicine at Stanford University, to be released as a pre-print on BioRxiv. (generalatlantic.com)
University1
- Edinburgh Genomics at the University of Edinburgh. (genetics.org.uk)
Resources1
- Translated versions as well as other informational videos and resources are available on the Queensland Genomics website . (genomicsinfo.org.au)
Platform1
- This toolkit also allows developers to interact with the platform in their own compute environment and integrate with their existing workflows. (ibm.com)