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  • syntenic
  • In this context, synteny was also essential in identifying a highly important region in wheat, the Ph1 locus involved in genome stability and fertility, which was located using information from syntenic regions in rice and Brachypodium. (wikipedia.org)
  • Consistent with increasing taxonomic distance, lower synteny (6.6% non-syntenic markers) was observed in an inter-section comparison between E. globulus and E. grandis×E. urophylla consensus linkage maps. (up.ac.za)
  • Sequence
  • B ) Sequence architecture at human-NLE gibbon synteny breaks. (nih.gov)
  • This capability means that synteny-based methods are far more effective than sequence similarity-based methods in identifying true-negatives, a necessity for studying gene loss and gene transposition. (omictools.com)
  • While overall sequence similarity as well as synteny is very high, we detected short and larger (affecting more than 100 bp) differences between Col-0 and Nd-1 based on bi-directional comparisons. (uni-bielefeld.de)
  • Pucker B, Holtgräwe D, Rosleff Sörensen T, Stracke R, Viehöver P, Weisshaar B. A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. (uni-bielefeld.de)
  • A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny", PLoS ONE , vol. 11, 2016, : 0164321. (uni-bielefeld.de)
  • evolutionary
  • In combination with phylogenetic profiling, several novel evolutionary patterns were inferred and visualized from synteny network clusters. (plantcell.org)
  • algorithm
  • The filtered hits are input to the synteny algorithm, which was designed to discover duplicated regions and form larger-scale synteny blocks, where intervening micro-rearrangements are allowed. (omictools.com)
  • markers
  • A total of 57 markers were developed based on synteny or literature and genotyped to produce a RH map spanning 205.2 cR. (cgiar.org)
  • regions
  • A table shows a list of genome associations that were included in the synteny input file, and the number of regions given for each genome pair. (nih.gov)
  • Visible synteny regions can be filtered based on numerical criteria specified for each region in the synteny input file. (nih.gov)
  • The regions associated with one or more particular genome pairs can be hidden using the buttons above the synteny display. (nih.gov)
  • Identification
  • Comparison with maps of M. truncatula and L. culinaris documented considerable shared synteny and led to the identification of a few major translocations and a major inversion that distinguish Lens from M. truncatula , as well as a translocation that distinguishes L. culinaris from L. ervoides . (frontiersin.org)
  • tools
  • We discuss how the quality of SBs can be measured against this definition and illustrate our approach with a comparison of three current tools for the construction of SBs-Cyntenator (), DRIMM-Synteny () (DRIMM) and i-ADHoRE 3.0 () (i-ADHoRe). (omictools.com)
  • multiple
  • For the full synteny display, the user can choose to enter either the pairwise or multiple viewing mode. (nih.gov)
  • Information on multiple synteny between plants and/or within a plant is key information to understand genome evolution. (omictools.com)