• In this context, synteny was also essential in identifying a highly important region in wheat, the Ph1 locus involved in genome stability and fertility, which was located using information from syntenic regions in rice and Brachypodium. (wikipedia.org)
  • Consistent with increasing taxonomic distance, lower synteny (6.6% non-syntenic markers) was observed in an inter-section comparison between E. globulus and E. grandis×E. urophylla consensus linkage maps. (up.ac.za)
  • Conserved loci of leaf and stem rust fungi of wheat share synteny interrupted by lineage-specific influx of repeat elements. (gc.ca)
  • In an effort to understand the mechanistic origin and implications of these rearrangement events, we sequenced 24 synteny breakpoint regions in the white-cheeked gibbon (Nomascus leucogenys, NLE) in the form of high-quality BAC insert sequences (4.2 Mbp). (nih.gov)
  • Comparative anchor tagged sequences (CATS) from human Chromosome 5 (HSA5) were used as PCR primers to produce molecular markers for synteny mapping in the horse. (elsevier.com)
  • CoGe, our online comparative genomics platform ( http://synteny.cnr.berkeley.edu/CoGe ), integrates genomic datasets from any organism, DNA alignment and assessment tools, and interactive graphic modules to enable researchers to compare any genomic DNA sequence, feature, or position with any other in any organism ( Lyons and Freeling, 2008 ). (plantphysiol.org)
  • Reconstructed ancestral or extant synteny comes with a support computed from an exhaustive exploration of the solution space. (biomedcentral.com)
  • The two homologous iron-binding lobes of transferrins are thought to have evolved by gene duplication of an ancestral monolobal form, but any conserved synteny between bilobal and monolobal transferrin loci remains unexplored. (biomedcentral.com)
  • Further, the high resolution provided by RH mapping, combined with chromosome-wise synteny analysis, located the ancestral point of fusion between the telomeric and centromeric repeats of two paleochromosomes that originated chromosome 1D. (cgiar.org)
  • The implications of the chromosomal location of this ancient synteny group for the evolution of the mammalian X chromosome are discussed. (edu.au)
  • These data, in conjunction with earlier human chromosome painting studies of the horse karyotype and synteny mapping of horse microsatellite markers physically mapped by FISH, confirm the assignment of UCD21 to ECA21 and suggest that UCD14 is located on ECA14. (elsevier.com)
  • A total of 57 markers were developed based on synteny or literature and genotyped to produce a RH map spanning 205.2 cR. (cgiar.org)
  • Short lecture relating my recent work on real-time phylogenomics, implications for bioinformatics research and future directions of genomic/phylogenetic modelling to explicitly account for phylogeny, synteny and identity through coloured graphs. (slideshare.net)
  • A table shows a list of genome associations that were included in the synteny input file, and the number of regions given for each genome pair. (nih.gov)
  • Visible synteny regions can be filtered based on numerical criteria specified for each region in the synteny input file. (nih.gov)
  • The regions associated with one or more particular genome pairs can be hidden using the buttons above the synteny display. (nih.gov)
  • During evolution, rearrangements to the genome such as chromosome translocations may separate two loci, resulting in the loss of synteny between them. (wikipedia.org)
  • GenFamClust: an accurate, synteny-aware and reliable homology inference algorithm. (symapdb.org)
  • B ) Sequence architecture at human-NLE gibbon synteny breaks. (nih.gov)
  • While overall sequence similarity as well as synteny is very high, we detected short and larger (affecting more than 100 bp) differences between Col-0 and Nd-1 based on bi-directional comparisons. (uni-bielefeld.de)
  • Pucker B, Holtgräwe D, Rosleff Sörensen T, Stracke R, Viehöver P, Weisshaar B. A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. (uni-bielefeld.de)
  • A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny", PLoS ONE , vol. 11, 2016, : 0164321. (uni-bielefeld.de)