Sweet orange genomes. Medical search. Frequent questions

Citrus × aurantium f. aurantium (Syn: Citrus × sinensis), a hybrid between pomelo (Citrus maxima) and mandarin (Citrus reticulata), also known as the sweet oranges, is a commonly cultivated species of orange that includes Valencia oranges, blood oranges and navel oranges. (wikipedia.org)
The listed BioSample isolate designation is Valencia sweet orange. (citrusgenomedb.org)
The kn1 gene construct was used to transform 'Pineapple', 'Hamlin', 'Sucarri' and 'Valencia' sweet orange [ Citrus sinensis (L.) Osbeck], 'Carrizo' Citrange [ Citrus sinensis (L.) Osbeck × Poncirus trifoliate (L.) Raf. (springer.com)
The Valencia orange is a sweet orange. (healthjade.com)
Primarily grown for processing and orange juice production, Valencia oranges have seeds, varying in number from zero to nine per fruit. (healthjade.com)
Worldwide, Valencia oranges are prized as the only variety of orange in season during summer. (healthjade.com)
Proteomic and metabolomic profiling of Valencia orange fruit after natural frost exposure. (perflavory.com)

Pomelo has the chloroplast genome, and thus the maternal line. (lucistyle.com)
The chloroplast genome, and therefore the maternal line, is that of pomelo. (themesforkirby.com)

In an effort to improve the rainbow trout reference genome sequence, we have re-sequenced the doubled haploid Swanson line using PacBio long reads. (usda.gov)
Bold type denotes lines with a publicly available reference genome. (soymagia.com)

Treatment of human immunodeficiency virus (HIV) infection with ZFN-mediated CCR5 gene disruption is one of the indicator examples of the ability of ZFNs in genome editing. (ac.ir)
High transformation efficiency of citrus is of great importance for large scale characterization of gene functions and also cultivar development via transgenic and genome editing technologies. (springer.com)
His Genome study is associated with Gene. (research.com)
Contemporary genomes evolved by descent with modification from earlier sequences, accumulating both neutral and adaptive mutations, with varying genomic impact ranging from small changes in sequence to radical changes in chromosome number and gene content. (oist.jp)
This principle allows us, for example, to infer the gene content and even genome structure of early vertebrate by comparing genomes of appropriately chosen living species, and to discern macro-evolutionary trends. (oist.jp)
In a recent study, the association of a long terminal repeat (LTR) to a Myb-like gene was found correlated to the red pigmentation in the flesh fruits of sweet orange cultivars. (unicatt.it)
Moreover, new data related to the GalUR gene family in the citrus genome may suggest its involvement. (unicatt.it)
Shotgun library sequences are an alternative to synthesis of primers for the study of each gene in the genome. (geneticsmr.com)
The possibility of putting thousands of gene sequences into a single slide allows the use of shotgun clones in order to proceed with microarray analysis without a completely sequenced genome. (geneticsmr.com)
The orange, after all, looks like a miniature sun, is formed as a condensation of energy and information from sunlight, and therefore is capable of storing, and after being eaten, irradiating us with life-giving packets of information-dense gene-regulating nutrition, by a mechanism that will never be fully reducible to or intelligible by the chemical skeleton we know of as ascorbic acid. (oneradionetwork.com)
CRISPR/Cas is a specific gene structure found in the genome of bacteria and archaea, and is the immune system of bacteria and archaea involved in destroying phage and exogenous plasmids. (plant-physiology.com)
Genome-wide identification, expression profiling, and network analysis of AT-hook gene family in maize. (musc.edu)
a 2016 study published in Nature Genetics by these researchers provided the first carrot genome sequence and uncovered the gene involved in the pigmentation of yellow carrot. (ncsu.edu)

The further step will be to exploit both transcriptome and genome information to map the location of natural genetic variants that confer economically important traits mostly in the fruit. (unicatt.it)
this allows simultaneous use of clones in projects such as transcriptome and phylogeny studies, using comparative genomic hybridization and genome assembly. (geneticsmr.com)
Whole genome transcriptome analysis of rice seedling reveals alterations in Ca 2+ ion signaling and homeostasis in response to Ca 2+ deficiency. (dpmb.ac.in)

The sweet orange's entire genome has a sequence. (lucistyle.com)
His scientific interests lie mostly in Computational biology, Genetics, Genome, Genomics and Sequence assembly. (research.com)
His Genome research includes themes of Virology and Sequence assembly. (research.com)
2014). A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. (dpmb.ac.in)
The whole genome sequence of five strains of S. citri are described herein. (biomedcentral.com)

This list of sequenced plant genomes contains plant species known to have publicly available complete genome sequences that have been assembled, annotated and published. (wikipedia.org)
Unassembled genomes are not included, nor are organelle only sequences. (wikipedia.org)
Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes. (cam.ac.uk)
Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure. (cam.ac.uk)
The genome sequences reported here will be used for comparative genomics and to better understand the etiology, relationships and evolution among the spiroplasmas. (biomedcentral.com)

Mapping the human genome made it easier to map the genomes of the rest of the world's animals. (365tomorrows.com)
Infoceuticals are imprints based on the ideal human genome or human map. (westonaprice.org)

Reassortment of genome segments creates stable lineages among strains of Orchid fleck virus infecting citrus in Mexico. (usda.gov)

The orange is the fruit of the citrus species Citrus × sinensis in the family Rutaceae, native to China. (themesforkirby.com)
The orange (specifically, the sweet orange ) is the fruit of the citrus species Citrus × sinensis in the family Rutaceae. (deepamdigital.com)
Although darker sweet potatoes are often referred to as "yams" in parts of North America, the species is not a true yam , which are monocots in the order Dioscoreales . (wikipedia.org)

Terpene down-regulation triggers defense responses in transgenic orange leading to resistance against fungal pathogens. (perflavory.com)

In this study, Cara cara navel orange fruit at four development stages were used to identify the key genes and TFs for carotenoids and flavonoids accumulation. (researchsquare.com)
In this study, Cara cara navel orange (CNO) was used to investigate the profiles of carotenoids and flavonoids by a combination of metabolomic and transcriptomic analyses. (researchsquare.com)
Navel oranges are characterized by the growth of a second fruit at the apex, which protrudes slightly and resembles a human navel. (healthjade.com)
Their widespread distribution and long growing season have made navel oranges very popular. (healthjade.com)
Nevertheless, a researcher at the University of California, Riverside, has suggested that the parent variety was more likely the Portuguese navel orange (Umbigo). (healthjade.com)
Today, navel oranges continue to be propagated through cutting and grafting. (healthjade.com)
This does not allow for the usual selective breeding methodologies, and so all navel oranges can be considered fruits from that single, nearly two-hundred-year-old tree: they have exactly the same genetic make-up as the original tree and are, therefore, clones. (healthjade.com)
Spiroplasma citri was isolated and grown in LD8 medium [ 12 ], triple cloned, and stored at − 80 °C. S. citri strain C189 was established in 1972 from a Navel orange tree ( Citrus sinensis (L.) Osb. (biomedcentral.com)
S. citri strain LB319 was isolated in 2007 from a Spring Navel orange tree in Ducor, California. (biomedcentral.com)

Orange trees in movable pots, so that they can be placed indoors for the winter Orange flowers Unripened fruit Blood oranges Oranges on the branch Oranges on a tree A mature tree in Galicia, Spain Orange fruit and leaf both are reported to contain indole alkaloids including N,N-DMT. (wikipedia.org)
Blood oranges 18) are a natural mutation of Citrus sinensis, although today the majority of them are hybrids. (healthjade.com)
Blood oranges were first discovered and cultivated in Sicily in the fifteenth century. (healthjade.com)
The generally identical structure and composition of genes taking part to anthocyanins pathway and their higher expression in blood oranges compared to common ones, suggested the investigation on regulatory network, in particular MYB transcription factors that play an important role in activation of the biosynthesis. (unicatt.it)

Genome sequencing of a fungal bee symbiont as part of a comparative study of Ascosphaera fungi. (usda.gov)
The comparative study of genomes provides a window into the origin and evolution of plant and animal diversity. (oist.jp)
We apply the general comparative principle: features that are shared by two or more genomes were either present in their common ancestor, or evolved convergently. (oist.jp)
The OC Identifier tool allows comparative genome analysis, biological databases, query language in relational databases, and provides bioinformatics tools to identify clones that contain unique genes as alternatives to primer synthesis. (geneticsmr.com)

The orange is a cross between the pomelo (Citrus maxima) and the mandarin (Citrus reticulata). (lucistyle.com)

Integrated Genome-Scale Analysis Identifies Novel Genes and Networks Underlying Senescence in Maize. (musc.edu)
A new study of the genetic blueprints of more than 600 types of carrot shows that three specific genes are required to give carrots an orange color. (ncsu.edu)
In the case of the orange carrot, the genes that regulate orange carotenoids - the precursor of vitamin A that have been shown to provide health benefits - need to be turned off. (ncsu.edu)
We found many genes involved in flowering regulation that were selected in multiple populations in orange carrot, likely to adapt to different geographic regions," Iorizzo said. (ncsu.edu)

Further identification and analyses of hybrids and admixed genomes provides insights into the genealogy of major commercial cultivars of citrus. (oist.jp)

varieties of sweet oranges arise as a result of mutations. (lucistyle.com)

Sweet orange, lemon, lime and grapefruit, are characterized by high heterozygosis, but nearly all cultivars are similar, as they originate from a common ancestor hybrid. (unicatt.it)
Cultivars of the sweet potato have been bred to bear tubers with flesh and skin of various colors. (wikipedia.org)
Sweet potato cultivars with white or pale yellow flesh are less sweet and moist than those with red, pink or orange flesh. (wikipedia.org)

The emergence of TALENs in 2010 has enabled the genome modification of non- model organisms, while the emergence of the CRISPR/Cas9 system in 2013 as a revolutionary genome-editing tool has allowed us to anticipate the forthcoming new era of genome editing research. (ac.ir)
CRISPR/Cas9, a convenient, precise and efficient genome editing technology, was developed according to the mechanism of type II CRISPR/Cas recently. (plant-physiology.com)
The recent developments of CRISPR/Cas9 genome editing technology in rice, wheat, sorghum, Arabidopsis , tobacco and sweet orange, etc, were analyzed in detail in this paper. (plant-physiology.com)

The orange fruit is an important agricultural product, used for both the juicy fruit pulp and the aromatic peel (rind). (wikipedia.org)
Acne this Winter: The juicy and tangy orange makes a splash in the winter. (lucistyle.com)
Falling juicy oranges with g. (pngimg.com)
Orange colored stalks indicate non-sweet, dry stems, while blue stalks indicate sweet and juicy stems. (soymagia.com)

it primarily refers to Citrus sinensis, also known as sweet orange, to differentiate it from the related Citrus aurantium, known as bitter orange. (lucistyle.com)
It is also called sweet orange, to distinguish it from the bitter orange (also known as Citrus aurantium). (healthjade.com)
The fruit of the Citrus × sinensis is considered a sweet orange , whereas the fruit of the Citrus × aurantium is considered a bitter orange . (deepamdigital.com)

Sweetpotato can grow at altitudes from sea level to 2,500 meters above sea level, and comes in varieties ranging in color from white to yellow, orange or purple. (cipotato.org)

This data was downloaded from the NCBI website, genome accession number GCA_022201065.1 . (citrusgenomedb.org)

To download the genome assembly and annotation files, please visit the CGD data repository . (citrusgenomedb.org)
Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome. (perflavory.com)

Orange carrot could have resulted from white and yellow carrot crosses, as white and yellow carrots are at the base of the phylogenetic tree for the orange carrot. (ncsu.edu)

Preliminary Analysis of Cytoplasmic Genome of Diploid Somatic Hybrid Derived from Fusion Between Rough Lemon and Hamlin Sweet Orange [J]. J Integr Plant Biol. (jipb.net)

Citrus greening disease - bacterial disease killing orange trees and other citrus fruits grown Wikimedia Commons has media related to: Citrus sinensis (category) Wikispecies has information related to Citrus sinensis. (wikipedia.org)
Carrots, especially orange carrots, contain high quantities of carotenoids, which can help reduce the risk of diseases like eye disease. (ncsu.edu)

Sweet potatoes and carrots are high in vitamin A and are commonly found in winter produce. (lucistyle.com)
Carrots and sweet potatoes are both nutritious vegetables high in vitamin A and potassium.Which healthier for someone determines by what they require in their diet.Sweet potatoes are higher in calories and nutrients, making them ideal for people trying to lose or gain weight. (lucistyle.com)
Conventional nutritional science still looks at the vitamin C activity of oranges as equivalent to the molecular weight of the compound known as ascorbic acid, without realizing that an orange embodies (as do all whole foods) a complex orchestra of chemistries, the handiwork of millions of years of evolution, which is to say a process of intelligent biological design. (oneradionetwork.com)
Oranges are a great example of this, as vitamin C alone can not account for the wide range of health benefits they possess, especially considering that their peel and their aroma also constitute therapeutic elements of this incredible whole food. (oneradionetwork.com)
The orange carrot is the most abundant plant source of pro-vitamin A in the American diet. (ncsu.edu)
Orange carrots later grew in popularity as greater understanding of alpha- and beta-carotenes, the precursor of vitamin A in the diet, progressed in the late 19th and early 20th centuries. (ncsu.edu)
In addition to containing a high percentage of vitamin C, it is recognizable by its bitterness and mildly sweet taste. (simpleluxeliving.com)
Gooseberries contain about twenty times more vitamin C than oranges. (simpleluxeliving.com)
Just 125 g of fresh orange-fleshed sweetpotato contains enough beta carotene to provide the daily vitamin A needs of a preschool-aged child. (cipotato.org)

When sweet orange plants (Citrus sinensis (L.) Osbeck) are infected with CPsV a deregulation in conserved microRNA accumulation is observed. (conicet.gov.ar)

The fruit of the orange tree can be eaten fresh, or processed for its juice or fragrant peel. (themesforkirby.com)
sweet orange peel oil c.p. (citrus sinensis var. (perflavory.com)

In this article, we review essential genome editing tools, summarize their applications in crop improvement, as well as, next-generation crop breeding and their computational resources will be discussed. (ac.ir)

The anthocyanins are responsible for red pigmentation in the flesh of sweet orange and one of the most important antioxidant compounds together with carotenoids (in particular lycopene) and ascorbic acid. (unicatt.it)

In science, it's a dare to match wits: "To talk about soy isolate proteins in the same breath as fermented traditional forms is a bit like comparing apples and oranges. (scottberinato.com)

The genus Ipomoea that contains the sweet potato also includes several garden flowers called morning glories , though that term is not usually extended to I. batatas . (wikipedia.org)

The preprint of the maize B73 RefGen_V4 genome paper can be found at http://biorxiv.org/content/early/2016/12/19/079004 . (plantcyc.org)

For this genome, please cite Wu et al, A chromosome-level phased genome enabling allele-level studies in sweet orange: a case study on citrus Huanglongbing tolerance . (citrusgenomedb.org)

Orange trees are widely grown in tropical and subtropical climates for their sweet fruit. (healthjade.com)

We provide conclusive proof that (1) all vertebrates (including jawless lampreys and the jawed fishes and land-dwelling vertebrates) share one common whole genome duplication ("1R"), (2) jawed vertebrates share a second whole genome duplication ("2Rjv") that not found in lampreys, and (3) the jawed-vertebrate specific duplication occurred via allotetraploidy, a process that occurs via hybridization of distinct progenitors. (oist.jp)
The phrase "apples and oranges" used to disqualify a comparison found its way into print twice so far today, February 22, 2002. (scottberinato.com)
That year, apples versus oranges was found only three times - first and most notably in the February 3, 1975 Business Week . (scottberinato.com)
On my Nexis search, the apples and oranges ploy was found in the sports pages and on the front page. (scottberinato.com)

Every day, eat one orange or drink one glass of orange juice to flush toxins and cleanse your skin from within. (lucistyle.com)
Production of orange juice between the São Paulo (Brazil) and mid-south Florida areas makes up roughly 85% of the world market. (healthjade.com)
We consider it a sweet treat, its juice a refreshing beverage, but do we ever really reflect on its medicinal properties? (oneradionetwork.com)
Many of us mistakenly look to orange juice today as a dangerous source of highly concentrated fructose - simple "carbs" - without recognizing its profound medicinal properties. (oneradionetwork.com)

Transcriptomic analyses reveal physiological changes in sweet orange roots affected by citrus blight. (usda.gov)
Stable incorporations of T-DNA into the citrus genome have been confirmed with both histochemical staining of GUS activity and molecular analyses. (springer.com)
The researchers performed so-called selective sweeps - structural analyses among five different carrot groups to find areas of the genome that are heavily selected in certain groups. (ncsu.edu)

Genome‐wide expressional and functional analysis of calcium transport elements during abiotic stress and development in rice. (dpmb.ac.in)

In 2013, 71.4 million metric tons of oranges were grown worldwide, production being highest in Brazil and the U.S. states of Florida and California. (pngimg.com)

The color and sweeter flavor of the orange carrot drove its popularity and farmers selected for those traits. (ncsu.edu)

Other small additional ORFs displayed by CYMV genome potentially encode for proteins with a molecular weight of 17.4 kDa (ORF IV), 10.7 kDa (ORF V) and 17.5 kDa (ORF VI). (gydb.org)

The S. citri genomes yielded between 40,816 and 122,010 reads encompassing a range of 5.4 Mb to 1.7 Gb. (biomedcentral.com)

Common oranges (also called "white", "round", or "blond" oranges) constitute about two-thirds of all the orange production. (healthjade.com)
It's so common that it no longer requires exposition: "Apples and oranges, says the Bush White House. (scottberinato.com)
Sweet potato is only distantly related to the common potato ( Solanum tuberosum ), both being in the order Solanales . (wikipedia.org)
Although the sweet potato is not closely related botanically to the common potato , they have a shared etymology. (wikipedia.org)

How the banana's sweet taste and cheerful appearance obscure a potentially calamitous sexual inadequacy. (danginteresting.com)

Targeted genome engineering or editing enables researchers to modify genomic loci of interest in a precise manner, which has a turning point in medicine, biological research, and biotechnology. (ac.ir)

Massimo Iorizzo examines orange carrots to learn more about their pigmentation and domestication. (ncsu.edu)

Symbiotic organs shaped by distinct modes of genome evolution in cephalopods" PNAS . (oist.jp)
GreenMedInfo.com has indexed no less than 37 distinct health benefits its use may confer, all of which can be explored on our Orange Medicinal Properties research page. (oneradionetwork.com)
Although the soft, orange sweet potato is often called a " yam " in parts of North America, the sweet potato is very distinct from the botanical yam ( Dioscorea ), which has a cosmopolitan distribution, [8] and belongs to the monocot family Dioscoreaceae . (wikipedia.org)

An HPLC-MS characterization of the changes in sweet orange leaf metabolite profile following infection by the bacterial pathogen Candidatus Liberibacter asiaticus. (perflavory.com)

Orange carrots made their appearance in western Europe in about the 15th or 16th century. (ncsu.edu)
White and yellow carrots are at the base of the orange carrot's phylogenic tree. (ncsu.edu)
Different types of orange carrots were developed in northern Europe in the 16th and 17th centuries, which matches the appearance of different shades of orange carrots in paintings from that era. (ncsu.edu)

Genome sequencing and assembly of Pectinophora gossypiella (Pink bollworm) was conducted by the USDA-ARS Ag100Pest Initiative. (usda.gov)
Genome sequencing and assembly of Aethina tumida (small hive beetle) was conducted by the USDA-ARS Ag100Pest Initiative. (usda.gov)
Genome sequencing and assembly of Anthonomus grandis grandis (boll weevil) was conducted by the USDA-ARS Ag100Pest Initiative. (usda.gov)

Anatomy2

Organisms5

Diseases1

Chemicals and Drugs5

Analytical, Diagnostic and Therapeutic Techniques and Equipment1

Psychiatry and Psychology1

Phenomena and Processes15

Technology, Industry, Agriculture3

Information Science2

Valencia7

Chloroplast genome2

Reference genome2

Gene13

Transcriptome3

Sequence5

Sequences5

Human genome2

Strains1

Species3

Transgenic1

Navel9

Blood oranges4

Comparative4

Pomelo1

Genes4

Hybrids1

Mutations1

Cultivars3

CRISPR3

Juicy4

Bitter orange3

Varieties1

NCBI1

Annotation2

Phylogenetic1

Diploid1

Disease2

Vitamin9

Osbeck1

Peel2

Computational1

Anthocyanins1

Isolate1

Genus1

20161

Cite1

Fruit1

Found4

Juice4

Analyses3

Analysis1

Grown1

Flavor1

Molecular weight1

Reads1

Common4

Potentially1

Researchers1

Pigmentation1

Distinct3

Leaf1

Carrots3

Assembly3