GenesCytochromeGenomeMtDNAProteinsGenomesEncodesNuclear ribosomalSpeciesMutationsMitochondriaTRNAPhylogenyNucleotideMRNAMolecularMammalianFungiRibosomesRemarkablyMarkersEukaryotesEscherichiaPutativeSimilarityGenomicHeterogeneousAmino acidCytbPrimersAnnotationPublicly availableBase pairsAnalysisPolypeptidesAntisenseResidues
Genes30
- The two smallest sequenced genomes (A. terreus and P. chrysogenum) do not contain introns in protein-coding genes, whereas the largest genome (T. stipitatus), contains a total of eleven introns. (umd.edu)
- Despite the conservation of the core genes, the mitochondrial genomes of Aspergillus and Penicillium species examined here exhibit significant amount of interspecies variation. (umd.edu)
- Most of this variation can be attributed to accessory genes and mobile introns, presumably acquired by horizontal gene transfer of mitochondrial plasmids and intron homing. (umd.edu)
- To address these issues, single gene (usually the nuclear ribosomal small subunit gene) and mitochondrial gene phylogenies have been used, but the information contained within the sequence of these genes is not enough to resolve the topological relationships between clades that emerged during rapid cladogenesis. (bl.uk)
- In addition, mitochondrial DNA (mtDNA) encodes 2 ribosomal RNA genes and 22 transfer RNA (tRNA) genes necessary for the intramitochondrial synthesis of these 13 polypeptides. (medscape.com)
- Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. (thermofisher.com)
- Skin microfilariae that were isolated from tissues surrounding the nodules were confirmed as O. fasciata by sequencing of the cytochrome c oxidase subunit 1 ( cox 1) and 12S rRNA genes and used for SEM and Giemsa staining. (biomedcentral.com)
- Here, we obtained samples from 30 localities distributed in the region and used molecular (12S and 16S mitochondrial genes) and morphological (penis) characters to investigate diversity of this poorly known fauna. (springeropen.com)
- A deletion anywhere in the mitochondrial genome may affect transcription or translation of genes that were not affected by the deletion. (medscape.com)
- First, all hitherto known ciliate mitochondrial genomes are linear, from 40 kb ( P. tetraurelia ) to 47 kb ( Tetrahymena ) long, and contain some 50 tightly packed genes without introns. (biomedcentral.com)
- Mitochondrial DNA encodes totally for 37 genes, 13 are for proteins (polypeptides), 22 are for transfer RNA (tRNA) and two are for the small and large subunits of ribosomal RNA (rRNA). (mygenostics.com)
- Targeted re-sequencing focuses on particular nuclear or mitochondrial genes or gene regions (gene panels) that are selected based on a priori knowledge associated with mitochondrial disease. (mygenostics.com)
- By sequencing only known mitochondria-relative genes, results are relatively easy to interpret and offer distinct advantages when trying to find the underlying cause of mitochondrial disease. (mygenostics.com)
- Mitochondrial genomes (or mitogenomes) with about 15,000 base pairs, provide a significant amount of information, especially details about their genes. (bioengineer.org)
- Therefore comparative genomic analysis of T . equi was undertaken to: 1) identify genes contributing to immune evasion and persistence in equid hosts, 2) identify genes involved in PBMC infection biology and 3) define the phylogenetic position of T . equi relative to sequenced apicomplexan parasites. (biomedcentral.com)
- Comparative genomic analysis of T . equi revealed the phylogenetic positioning relative to seven apicomplexan parasites using deduced amino acid sequences from 150 genes placed it as a sister taxon to Theileria spp . (biomedcentral.com)
- small molecule perturbations changing expression of MRPL39 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. (maayanlab.cloud)
- Studies of the gau ORF will shed light on the origin of novel genes and their functions in organelles and could also have medical implications for human diseases that are caused by mitochondrial dysfunction. (biomedcentral.com)
- Moreover, this strengthens evidence for mitochondrial genes coded according to an overlapping genetic code. (biomedcentral.com)
- The mitochondrial genes are arranged compactly and generally have no introns and few intergenic nucleotides. (biomedcentral.com)
- The number of mitochondrial protein genes is believed to vary from 3 to 67, while the tRNA gene content varies from 0 to 27 [ 2 ]. (biomedcentral.com)
- Typical triploblastic animal mtDNAs contain genes that encode the large and small subunit ribosomal RNAs, 22 transfer RNAs (tRNAs), and 13 proteins that are all components of the oxidative phosphorylation process: ATPase subunits 6 and 8 (ATP6 and 8), cytochrome b (Cyt b), cytochrome c oxidase subunits 1-3 (Cox1-3) and NADH dehydrogenase subunits 1-6 and 4L (ND1-6 and 4L). (biomedcentral.com)
- In view to find putative mitochondrial genes in alternative reading frames on both coding and "presupposed" non-coding strands, numerous complete mtDNA genomes have been analyzed. (biomedcentral.com)
- ITS - is the DNA spacer located between the small subunit and large subunit rRNA genes. (icgbio.ru)
- The genes encoding ribosomal RNAs are located one after another in tandem and are repeated several hundred times, so we use new generation sequencing to estimate the frequency of occurrence of SNPs in the genome of one organism. (icgbio.ru)
- The mitogenome of D. maidis is 16,488 base pairs long and contains 37 genes: 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), and two ribosomal RNA (rRNA) genes. (geneticsmr.com)
- Mitochondrial DNA contains 37 genes, all of which are essential for normal mitochondrial function. (medlineplus.gov)
- The remaining genes provide instructions for making molecules called transfer RNA (tRNA) and ribosomal RNA (rRNA), which are chemical cousins of DNA. (medlineplus.gov)
- Mutations in at least three mitochondrial genes can cause cytochrome c oxidase deficiency, which is a condition that can affect several parts of the body, including the muscles used for movement (skeletal muscles), the heart, the brain, or the liver. (medlineplus.gov)
- The mitochondrial genes associated with cytochrome c oxidase deficiency provide instructions for making proteins that are part of a large enzyme group (complex) called cytochrome c oxidase (also known as complex IV). (medlineplus.gov)
Cytochrome9
- The main focus of this research is to determine the molecular phylogeny and characterization of Mundri Sheep ( Ovis aries ) through sequencing of mitochondrial Cytochrome b and Cytochrome Oxidase Subunit I (COI). (veterinarska-stanica-journal.hr)
- Despite a disparity in gene content, all mtDNAs encode at least two components of the mitochondrial electron transport chain, including cytochrome c oxidase I (Cox1). (biomedcentral.com)
- A rapid diagnostic 'mulitplex' one-step polymerase chain reaction protocol (RD-PCR) was developed using cytochrome oxidase subunit 1 (COX1) mitochondrial DNA (mtDNA) to discriminate between S. haematobium and S. bovis. (imperial.ac.uk)
- 98% similarity between our reported partial cytochrome oxidase subunit I (mtCOI) gene and other D. maidis mtCOI sequences reported to date. (geneticsmr.com)
- Sequences of amplified cytochrome oxidase subunit I (CO I), cytochrome oxidase b (cyt b), internal transcribed spacer 2 (ITS2), 18s and 28s rDNA regions were analysed to confirm the number of sibling species. (biomedcentral.com)
- The 18s, 28s rDNA and cytochrome oxidase subunit I (CO I), internal transcribed spacer 2 (ITS2) and cytochrome b oxidase (cytb) sequences confirmed that the species belonged to the Argentipes complex. (biomedcentral.com)
- The phylogeny created from mitochondrial CO I and cytochrome b data and from the nuclear ITS2 region supports the existence of only two groups of flies (termed A and B) from Phlebotomus ( Euphlebotomus ) argentipes complex instead of the previously proposed three. (biomedcentral.com)
- More recently DNA sequence analysis of conserved regions of Ribosomal DNA (rDNA) or mitochondrial markers (e.g. cytochrome oxidase subunit I or cytochrome b oxidase) have been used. (biomedcentral.com)
- Previous molecular studies, mainly focusing on the sequence of mitochondrial cytochrome b gene, have made significant contributions to understanding the evolutionary history of Camelidae [2], and yet there has not been any significant comparative studies around the evolutionary relationship between Camelini and Lamini. (thetechnoant.info)
Genome18
- Sequences were gathered or generated for 53 nematode species from ESTs, gene predictions from full genome assemblies and transcripts from RNA-Seq experiments. (bl.uk)
- The mitochondrial genome is a 16569 base-pair closed circular loop of double-stranded DNA found in multiple copies within the mitochondrial matrix. (medscape.com)
- The mitochondrial genome encodes the genetic information for the 13 polypeptide subunits essential for the process of oxidative phosphorylation. (medscape.com)
- [ 13 ] The mitochondrial genome is remarkably concise, containing little noncoding capacity and no introns. (medscape.com)
- [ 5 ] The deletions vary in size and location on the mitochondrial genome in different individuals, although a common deletion of 4.9kB is present in at least a third of patients with Kearns-Sayre syndrome. (medscape.com)
- Despite the fact that the organization of the ciliate mitochondrial genome is exceptional, only few ciliate mitochondrial genomes have been sequenced until today. (biomedcentral.com)
- To test this question, we determined the mitochondrial genome sequence of Paramecium caudatum and compared the gene content and sequence properties to the closely related P. tetraurelia . (biomedcentral.com)
- Surprisingly, the codon usage bias in the P. caudatum mitochondrial genome, exemplified by the effective number of codons, is more similar to the distantly related T. pyriformis and other single-celled eukaryotes such as Chlamydomonas , than to the closely related P. tetraurelia . (biomedcentral.com)
- In order to promote the understaning of the mitochondrial genome evolution of single-celled eukaryotes, it is necessary to fill the large existing gaps of knowledge and data. (biomedcentral.com)
- Therefore, to fill in one of the above mentioned gaps, we decided to sequence the mitochondrial genome of P. caudatum , a close relative of the P. aurelia species complex, in order to elucidate the mitochondrial genome evolution within this important ciliate genus. (biomedcentral.com)
- As a small part of the human genome, Mitochondrial DNA (mtDNA or mDNA) with 16,569 base pairs is located in mitochondria. (mygenostics.com)
- These subcellular organelles contain a genome that differs from the nuclear genome and is referred to as mitochondrial DNA (mtDNA). (biomedcentral.com)
- To fill in this knowledge gap, we provide here the complete mitochondrial DNA genome (mitogenome) of D. maidis (GenBank accession number: ON756137). (geneticsmr.com)
- We performed whole-genome (WG) de novo sequencing and complete assembly of S. fibuligera KJJ81 and KPH12, two isolates from wheat-based Nuruk in Korea. (biomedcentral.com)
- The completely sequenced S. fibuligera genome with high-quality annotation and RNA-Seq analysis establishes an important foundation for functional inference of S. fibuligera in the degradation of fermentation mash. (biomedcentral.com)
- To investigate the evolutionary relationship between Camelini and Lamini, we have made an unprecedented effort to obtain adequate samples from the wild two-humped camel, sequenced its mitochondrial genome completely, and carried out detailed sequence and evolutionary analyses. (thetechnoant.info)
- We collected 119 raw sequence traces with an average length of 521 bp at a quality value of Q20, which cover the entire genome four folds. (thetechnoant.info)
- Table 1 PCR primers used for the experiment The full-length mitochondrial genome is usually 16,680 bp in length [GenBank: "type":"entrez-nucleotide","attrs":"text":"EF212038″,"term_id":"156615976″,"term_text":"EF212038″EF212038], which is usually 28 bp longer than that of L. pacos . (thetechnoant.info)
MtDNA9
- Alternatively, diagnosis may be established by muscle biopsy with histochemistry and mitochondrial DNA (mtDNA) analysis for major rearrangements. (medscape.com)
- Located within the mitochondrial matrix, and lacking the efficient repair mechanisms available to nuclear DNA, mtDNA has a relatively high rate of mutation. (medscape.com)
- Kearns Sayre Syndrome (OMIM #530000) occurs as a result of large-scale single deletions (or rearrangements) of mitochondrial DNA (mtDNA), which are usually not inherited but occur spontaneously, probably at the germ-cell level or very early in embryonic development. (medscape.com)
- This raises the question of whether the high mitochondrial G+C content observed in P. tetraurelia is a characteristic property of Paramecium mtDNA, or whether it is an exception of the ciliate mitochondrial genomes known so far. (biomedcentral.com)
- Knowledge on the evolution of mitochondrial DNA (mtDNA) in single-celled organisms on the other hand is more scarce. (biomedcentral.com)
- Two interesting aspects of ciliate mtDNA are predominant and have made the assembly of mitochondrial genomes difficult. (biomedcentral.com)
- These essential subcellular organelles contain mitochondrial DNA (mtDNA), which is an extrachromosomal genetic element. (biomedcentral.com)
- Mitochondrial DNA (mtDNA) has been proven useful for studying evolutionary relationships among animal species, due to its conservativeness in protein-coding sequences, high substitution rate in its non-coding sequences, and lack of genetic recombination [5,6]. (thetechnoant.info)
- This genetic material is known as mitochondrial DNA or mtDNA. (medlineplus.gov)
Proteins15
- Mitochondrial ribosomal proteins were studied best in yeast, where the small subunit was shown to contain about 35 proteins. (pasteur.fr)
- Yet, genetic and biochemical studies identified only 14 proteins, half of which were predictable by sequence homology with prokaryotic ribosomal components of the small subunit. (pasteur.fr)
- Using a recently described affinity purification technique and tagged versions of yeast Ykl155c and Mrp1, we isolated this mitochondrial ribosomal subunit and identified a total of 20 proteins, of which 12 are new. (pasteur.fr)
- For a subset of the newly described ribosomal proteins, we showed that they are localized in mitochondria and are required for the respiratory competency of the yeast cells. (pasteur.fr)
- This brings to 26 the total number of proteins described as components of the mitochondrial small ribosomal subunit. (pasteur.fr)
- This study also includes a phylogenetic analysis based on 14 concatenated core mitochondrial proteins. (umd.edu)
- Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. (thermofisher.com)
- Because of the limited separation resolution of two-dimensional polyacrylamide gel electrophoresis (2-DE), only a small part of the proteins could be isolated and identified. (a-inhibitor.com)
- Ribosomal protein S4 is one of the proteins from the small ribosomal subunit. (expasy.org)
- Yeast ribosomal proteins: XII. (expasy.org)
- NAM9 nuclear suppressor of mitochondrial ochre mutations in Saccharomyces cerevisiae codes for a protein homologous to S4 ribosomal proteins from chloroplasts, bacteria, and eucaryotes. (expasy.org)
- Immunohistochemical analyses using an anti-Gau monoclonal antibody revealed strict co-localization of Gau proteins and a mitochondrial marker. (biomedcentral.com)
- The sequence encoded a novel protein rich in alanine (25%) and proline (20%), which contained regions similar to proteins of comparable amino acid composition such as extracellular matrix components or the membrane-cytoskeletal linker synapsin. (lookformedical.com)
- The co-chaperone Hep1 is required to prevent the aggregation of mitochondrial Hsp70 proteins. (cipsm.de)
- Plastid-specific ribosomal proteins (PSRPs) have been proposed to play roles in the light-dependent regulation of chloroplast translation. (cipsm.de)
Genomes10
- Their mitochondrial genomic sequences may hold vital clues into the mechanisms of their evolution, population genetics, and biology, yet only a handful of these genomes have been fully sequenced and annotated. (umd.edu)
- Here we report the complete sequence and annotation of the mitochondrial genomes of six Aspergillus and three Penicillium species: A. fumigatus, A. clavatus, A. oryzae, A. flavus, Neosartorya fischeri (A. fischerianus), A. terreus, P. chrysogenum, P. marneffei, and Talaromyces stipitatus (P. stipitatum). (umd.edu)
- The accompanying comparative analysis of these and related publicly available mitochondrial genomes reveals wide variation in size (25-36 Kb) among these closely related fungi. (umd.edu)
- All of the sequenced genomes have a group I intron in the large ribosomal subunit RNA gene, suggesting that this intron is fixed in these species. (umd.edu)
- The study expands the genomic resources available to fungal biologists by providing mitochondrial genomes with consistent annotations for future genetic, evolutionary and population studies. (umd.edu)
- All ciliate mitochondrial genomes are linear. (biomedcentral.com)
- The genomic information and evolution of the mitochondrial genomes of metazoans is well documented. (biomedcentral.com)
- This gene is ~1,350 amino acid residues long, shows extreme sequence divergence among Tetrahymena species and has no homolog in the P. tetraurelia or Euplotes mitochondrial genomes. (biomedcentral.com)
- We assembled genomes of two widely used PGC strains, 1A-D1628 and 74-D694, using Oxford Nanopore MinION sequencing data. (icgbio.ru)
- Conclusion Molecular clock analysis of complete mitochondrial genomes from C. bactrianus ferus and L. pacos suggested that the two tribes diverged from their common ancestor about 25 million years ago, much earlier than what was predicted based on fossil records. (thetechnoant.info)
Encodes5
- This gene encodes a 39S subunit protein. (creativebiomart.net)
- After identification of ambiguous regions, the method computes pairwise distances as sequence identities or cost scores, ordinates the resulting distance matrix by means of PCoA, and encodes the principal coordinates as ordered integers. (biomedcentral.com)
- This gene encodes a 39S subunit protein, a part of which was originally isolated by its ability to recognize tyrosinase in an HLA-A24-restricted fashion. (nih.gov)
- This gene encodes a 28S subunit protein that belongs to the ribosomal protein S2 family. (utsouthwestern.edu)
- The sequence of the four nucleotide bases encodes DNA's information. (genome.gov)
Nuclear ribosomal1
- It may not come as a surprise that only 12 of 174 species of Laboulbeniomycetes described between 2010 and 2020 were accompanied by sequences, mostly of nuclear ribosomal DNA regions, but also mitochondrial small subunit rDNA and the translation elongation factor 1α gene. (dannyhaelewaters.com)
Species17
- Phylogenetic analysis using DNA sequence information have helped to clarify our understanding of the relationships amongst Ganoderma species. (wikipedia.org)
- Next generation sequencing data have been shown to produce high quality genomic and transcriptomic assemblies at low cost, as a result more and more nematode species are being sequenced. (bl.uk)
- Only a handful of these species have been sequenced. (dannyhaelewaters.com)
- The goal is to use the generated sequence data to test morphology-based species concepts. (dannyhaelewaters.com)
- The student will generate sequences of multiple loci for Laboulbenia species from different hosts, building on previous work by de Weggheleire (2019) and Haelewaters et al. (dannyhaelewaters.com)
- We have inferred phylogenies of 32 species of phlebotomine sand flies belonging to seven sub-genera and two species groups, by using fragments of the mitochondrial small subunit (12SrRNA) and of the nuclear large subunit (28SrRNA) ribosomal gene sequences. (edu.pe)
- Four other clades contained sequences of one nominal species consistent with its type locality and at least two additional candidate species, which were corroborated by a particular penis morphology. (springeropen.com)
- Furthermore, some morphological differences in penis morphology were observed in two Altiplano populations not resolved by the DNA sequences, providing support for two additional candidate species in the genus. (springeropen.com)
- Earlier studies documented that the mitochondrial guanine + cytosine contents are very different between Paramecium tetraurelia and all studied Tetrahymena species. (biomedcentral.com)
- This difference in the mitochondrial nucleotide composition was accompanied by significantly different codon usage patterns in both species, i.e. within P. caudatum clearly A/T ending codons dominated, whereas for P. tetraurelia the synonymous codons were more balanced with a higher number of G/C ending codons. (biomedcentral.com)
- However, the new species described here are small, possibly explaining why they escaped the attention of researchers before. (bioengineer.org)
- The species is small (30 mm) and exhibits a spectacular green-blue iridescence over brown ground colour. (bioengineer.org)
- Gonzalez P, Labarère J (2000) Phylogenetic relationships of Pleurotus species according to the sequence and secondary structure of the mitochondrial small-subunit rRNA V4, V6 and V9 domains. (vegetosindia.org)
- Despite high interest to different sturgeon species, acipenserid ITS1 and ITS2 sequences are missing in the GenBank depository, and most sturgeon population studies are performed using mitochondrial markers. (icgbio.ru)
- The population dynamics and survival strategies of D. maidis could be better understood by studying the species' genetics, which has been little explored thus far. (geneticsmr.com)
- 18s and 28s sequences did not show any variation among the proposed sibling species. (biomedcentral.com)
- As a result, reactive oxygen species easily damage mitochondrial DNA, causing cells to malfunction and ultimately to die. (medlineplus.gov)
Mutations5
- We established a new method to determine the mutation rate of many strains simultaneously by tracking mutation events in a chemostat continuous culture device and applying deep sequencing to link mutations to alleles of a DNA-repair gene. (bvsalud.org)
- Collectively, our data demonstrates pathogenic mutations in MRPS14 can manifest as a perinatal-onset mitochondrial hypertrophic cardiomyopathy with a novel molecular pathogenic mechanism that impairs the function of mitochondrial ribosomes during translation elongation or mitochondrial mRNA recruitment rather than assembly. (unibe.ch)
- NAM9 has been characterized as a suppressor for ochre mutations in mitochondrial DNA. (expasy.org)
- Studying mutations associated with mitochondrial disorders remains a challenge due to phenotypic variability and genetic heterogeneity among individuals. (mygenostics.com)
- As people age, mitochondrial DNA accumulates damaging mutations, including deletions and other changes. (medlineplus.gov)
Mitochondria1
- Although most DNA is packaged in chromosomes within the nucleus, mitochondria also have a small amount of their own DNA. (medlineplus.gov)
TRNA1
- An anticodon is a trinucleotide sequence located at one end of a transfer RNA (tRNA) molecule, which is complementary to a corresponding codon in a messenger RNA (mRNA) sequence. (genome.gov)
Phylogeny2
- Complete mitogenomes and other sequences generally used for phylogeny, such as those of Small and Large Subunit Ribosomal RNA (SSU and LSU), allowed the research team to propose the first molecular study of relationships within the hammerhead flatworms (subfamily Bipaliinae). (bioengineer.org)
- Mitochondrial and nuclear markers were amplified and sequenced, and the hormogastrid phylogeny (using Bayesian and likelihood methods) and networks were investigated. (ucm.es)
Nucleotide1
- The tool works with standard single letter nucleotide or protein codes including ambiguities and can match Prosite patterns in protein sequences. (nih.gov)
MRNA1
Molecular7
- Sequence alignment is the most critical step in molecular phylogenetic analysis. (biomedcentral.com)
- Dysfunction of mitochondrial translation is increasingly an important molecular cause of human disease, but structural defects of mitochondrial ribosomal subunits are rare. (unibe.ch)
- A full range of techniques were used, including citizen science, field expeditions, macro photography, classical morphology, and new generation sequencing in molecular biology. (bioengineer.org)
- Nine inter-simple sequence repeat (ISSR) markers were used for the estimation of molecular diversity. (vegetosindia.org)
- Methods: We sampled the easternmost area of the hormogastrid range and integrated 606 new sequences with all the molecular data available from previous studies on the westernmost area. (ucm.es)
- This RD-PCR proved highly sensitive, detecting a single larval stage and as little as 0.78 ng of genomic DNA (gDNA) from an adult schistosome, providing a cost-effective, rapid and robust molecular tool for high-throughput screening of S. haematobium and S. bovis populations. (imperial.ac.uk)
- However, there have been very few molecular studies due to difficulties in either obtaining enough DNA samples or acquiring enough sequence information. (thetechnoant.info)
Mammalian1
- The 28S subunit of the mammalian mitoribosome may play a crucial and characteristic role in translation initiation. (thermofisher.com)
Fungi3
- METHODS: Two cohorts of 20-week-old and 52-week-old wild-type (WT) C57BL/6J and NOD2 knockout (Nod2-KO) mice were treated with broad-spectrum antibiotics and fecal samples were collected to investigate temporal dynamics of the intestinal microbiota (bacteria and fungi) using 16S ribosomal RNA and internal transcribed spacer 1 sequencing. (bvsalud.org)
- During this MSc project, the student will collect insects in Belgium and the Netherlands, screen them for the presence of thalli of Laboulbenia , identify the fungi, and generate sequences for them. (dannyhaelewaters.com)
- Das S, Deb B (2015) DNA barcoding of fungi using ribosomal ITS marker for genetic diversity analysis: a review. (vegetosindia.org)
Ribosomes1
- Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. (thermofisher.com)
Remarkably1
- Remarkably, almost half of the previously and newly identified mitochondrial ribosomal components showed no similarity to any known ribosomal protein. (pasteur.fr)
Markers2
- Nazrul MI, YinBing B (2011) Differentiation of homokaryons and heterokaryons of Agaricus bisporus with inter-simple sequence repeat markers. (vegetosindia.org)
- In areas where human and cattle schistosomiasis overlap and are transmitted in close proximity, this mitochondrial assay will be a valuable identification tool for epidemiological studies, especially when used in conjunction with other nuclear diagnostic markers. (imperial.ac.uk)
Eukaryotes1
- The mitochondrial gene content is highly variable across eukaryotes. (biomedcentral.com)
Escherichia3
- In Escherichia coli, S4 is known to bind directly to 16S ribosomal RNA. (expasy.org)
- Here we demonstrate that PSRP1 is not a bona fide ribosomal protein, but rather a functional homologue of the Escherichia coli cold-shock protein pY. (cipsm.de)
- Expression of the Escherichia coli tryptophanase operon depends on ribosome stalling during translation of the upstream TnaC leader peptide, a process for which interactions between the TnaC nascent chain and the ribosomal exit tunnel are critical. (cipsm.de)
Putative1
- Sequence alignments suggested that the chloroplast infA gene encoding initiation factor 1 in the green alga Chlorella vulgaris has TTG as a putative initiation codon. (lookformedical.com)
Similarity1
- Find regions of similarity between this sequence and other sequences using BLAST. (nih.gov)
Genomic2
- Despite its long history of use in food fermentation and bioethanol production, very little is known about the basic physiology and genomic features of S. fibuligera . (biomedcentral.com)
- An allele is one of two or more versions of DNA sequence (a single base or a segment of bases) at a given genomic location. (genome.gov)
Heterogeneous2
- How can a heterogeneous group of mitochondrial deletions lead to a similar phenotype? (medscape.com)
- Mitochondrial disorders are heterogeneous, inherited diseases that can arise at any stage of life. (mygenostics.com)
Amino acid1
- A codon is a DNA or RNA sequence of three nucleotides (a trinucleotide) that forms a unit of genetic information encoding a particular amino acid. (genome.gov)
Cytb1
- An evolutionary history reconstructed for the family Camelidae based on cytb sequences suggested that the split of bactrian camel and dromedary 156897-06-2 IC50 may have occurred in North America before the tribe Camelini migrated from North America to Asia. (thetechnoant.info)
Primers3
- Design and test primers for this sequence using Primer-BLAST. (nih.gov)
- Primers for the mitochondrial COI gene were also designed to assist in future studies. (geneticsmr.com)
- We sequenced some of the PCR-amplified DNA segments first to obtain as much authentic sequences as possible from the wild two-humped camel, and subsequently designed new primers according to the newly acquired sequences. (thetechnoant.info)
Annotation1
- Six adult specimens collected in Southern Brazil (Novo Machado/RS and Salvador das Missões/RS) were used for DNA extraction and sequencing on an Illumina MiSeq, followed by mitogenome assembling using NOVOPlasty v4.3.1, and annotation using MITOS v2.0.8. (geneticsmr.com)
Publicly available1
- An analysis of publicly available ITS sequences in R. subsect. (bvsalud.org)
Base pairs1
- In humans, mitochondrial DNA spans about 16,500 DNA building blocks (base pairs), representing a small fraction of the total DNA in cells. (medlineplus.gov)
Analysis3
- The method works via ordination of sequence identity or cost scores matrices by means of Principal Coordinates Analysis (PCoA). (biomedcentral.com)
- Beati, L , Cáceres, AG , Lee, JA & Munstermann, LE 2004, ' Systematic relationships among Lutzomyia sand flies (Diptera: Psychodidae) of Peru and Colombia based on the analysis of 12S and 28S ribosomal DNA sequences ', International Journal for Parasitology , pp. 225-234. (edu.pe)
- 45 working days for sequencing service and data analysis. (mygenostics.com)
Polypeptides1
- A protein consists of one or more chains of amino acids (called polypeptides) whose sequence is encoded in a gene. (genome.gov)
Antisense1
- Transformation of the diploid oomycete plant pathogen Phytophthora infestans with antisense, sense, and promoter-less constructs of the coding sequence of the elicitin gene inf1 resulted in transcriptional silencing of both the transgenes and the endogenous gene. (lookformedical.com)
Residues1
- The simplest approach is to encode residues by sequence length (each length receiving a different code) or coding them as identical or different without measuring the degree of identity or difference [ 27 ]. (biomedcentral.com)