Sequences also sequences. Medical search. Frequent questions

Next Generation Sequencing (NGS) is one technique that can measure one or more genetic variations as a laboratory diagnostic test, such as when used as a companion in vitro diagnostic test. (cms.gov)
What can you do with Next Generation Sequencing? (utmb.edu)
The amount of information gathered via next-generation sequencing has made the diagnosis of genetic disorders quicker and more accessible to clinicians than ever before, but with expanded testing options come questions about ordering the correct type of testing. (news-medical.net)
The MultiPark next generation sequencing (NGS) facility is located at the BMC in Lund. (lu.se)
The core offers state-of-the art next generation sequencing technology for experimental and preclinical studies with particular expertise in transcriptome analysis. (lu.se)
This hands on course will give you the experience and provide the tools that are needed to analyze next generation sequencing data. (lu.se)
One unit for Next-Generation Sequencing (NGS) and a second unit for more traditional Sanger DNA sequencing. (lu.se)

The DNA sequencing was done with the Illumina 1G equipment. (eurekalert.org)
For the new study, researchers used in-solution capture and deep Illumina shotgun sequencing to generate Y. pestis and human host sequences for a Bronze Age man known as RT5, producing more than 32-fold average coverage of that Y. pestis genome. (genomeweb.com)
As we are using Illumina sequencing platforms, we provide some general information below. (lu.se)

UCLA molecular biologists have turned protein sequences into original compositions of classical music. (sciencedaily.com)
We converted the sequence of proteins into music and can get an auditory signal for every protein," said Jeffrey H. Miller, distinguished professor of microbiology, immunology and molecular genetics, and a member of UCLA's Molecular Biology Institute. (sciencedaily.com)
Every protein will have its unique auditory signature because every protein has a unique sequence. (sciencedaily.com)
You can hear the sequence of the protein. (sciencedaily.com)
We want to see if we can hear patterns within the music, as opposed to looking at the letters of an amino acid or protein sequence. (sciencedaily.com)
The rhythm is dictated by the protein sequence. (sciencedaily.com)
The browser allows anyone to send in a sequence coding for a protein, which will then be converted into music and returned as a MIDI audio file. (sciencedaily.com)
Takahashi and Miller are not the first scientists to attempt to convert protein sequences into music, but they believe their music is more melodic and less "jumpy" than previous attempts. (sciencedaily.com)
Now they are piloting a computer program, written by colleague Frank Pettit, that uses their translation rules to convert the protein sequences to music. (sciencedaily.com)
Huntington's disease is an example of a triplet repeat disorder in which an expansion of a repeated glutamine sequence causes the protein to lose its proper function. (sciencedaily.com)
Medicare Administrative Contractors (MACs) may determine coverage of diagnostic lab tests using NGS for RNA sequencing and protein analysis. (cms.gov)
Biotechnological innovations have vastly improved the capacity to perform large-scale protein studies, while the methods we have of identifying and quantifying individual proteins are still inadequate to perform protein sequencing at the single-molecule level. (nist.gov)
These nanopore systems are emerging as prominent tool for protein identification, detection, and analysis, suggesting realistic prospects in novel protein sequencing. (nist.gov)
This review summarizes the recent advances in nanopore sensors for protein sequencing from identification of individual amino acids to control translocation rates. (nist.gov)
Specifically, from an engineering perspective, the review aims to provides an opinion for future developments to realize nanopore-based protein sequencing by emphasizing joint efforts from various fields including chemical conjugation, protein engineering, molecular simulation, machine learning-assisted identification, and electronic device fabrication that are necessary for real-world translation. (nist.gov)
The specific goal of the thesis project is to develop and implement microfluidics coupled to microscopy for optical read out of gene sequences and protein localization. (lu.se)

What is whole genome sequencing (WGS)? (cdc.gov)
Whole genome sequencing is a laboratory procedure that determines the order of bases in the genome of an organism in one process. (cdc.gov)
How does whole genome sequencing work? (cdc.gov)
How has whole genome sequencing improved disease detection? (cdc.gov)
Since 2019, whole genome sequencing has been the standard PulseNet method for detecting and investigating foodborne outbreaks associated with bacteria such as Campylobacter , Shiga toxin-producing E. coli (STEC), Salmonella , Vibrio , and Listeria . (cdc.gov)
Since being launched, whole genome sequencing of pathogens in public health laboratories has improved surveillance for foodborne disease outbreaks and enhanced our ability to detect trends in foodborne infections and antimicrobial resistance. (cdc.gov)
Whole genome sequencing provides detailed and precise data for identifying outbreaks sooner. (cdc.gov)
As the use of whole genome sequencing expands, CDC's national surveillance systems and laboratory infrastructure must keep pace with the changing technology. (cdc.gov)
Whole genome sequencing is a fast and affordable way to obtain detailed information about bacteria using just one test. (cdc.gov)
The implementation of whole genome sequencing of pathogens for detecting and tracking foodborne outbreaks was made possible through collaborations with CDC's Advanced Molecular Detection (AMD) Office, Food Safety Office , and Antimicrobial Resistance Solutions Initiative . (cdc.gov)
One of my readers asked: Why does genome sequencing cost so much? (scienceblogs.com)
Are We Ready for Systematic Newborn Genome Sequencing? (medscape.com)
In the future, DNA samples could be taken from babies for whole genome sequencing to look for diseases that are likely to crop up later in life. (medscape.com)
There are several hundred rare diseases, and genome sequencing tools allow us to broaden our screening capabilities. (medscape.com)
Genome sequencing has already been studied for several years in multiple countries. (medscape.com)
New York's Guardian study requires all newborns taking part to undergo genome sequencing. (medscape.com)
One of its aims is to assess the medical, psychological, and financial impact of screening via genome sequencing at birth, compared with conventional screening. (medscape.com)
In the United Kingdom, Genomics England seeks to assess the feasibility, benefits, and risks of whole genome sequencing as part of the Newborn Genomes Programme , an analysis of 100,000 newborn genomes. (medscape.com)
Although France's initiative for genomic medicine, France Génomique 2025, does not envisage a neonatal genome sequencing screening program, a team in Dijon is studying several dozen genomes to determine the medical and financial benefits of such a program, explained Geneviève. (medscape.com)
Genome sequencing of thousands of SARS-CoV-2 samples shows that surges of COVID-19 cases are driven by the appearance of new coronavirus variants, according to new research from the School of Veterinary Medicine at the University of California, Davis published April 1 in Scientific Reports . (eurekalert.org)
With genome sequencing complete, scientists from around the world contributed their expertise to examine genes involved in different aspects of mosquito biology including reproductive processes, immune responses, insecticide resistance, and chemosensory mechanisms. (sciencedaily.com)
Is Genome Sequencing Surpassing Medical Knowledge? (npr.org)
It's not entirely clear whether whole-genome sequencing will be the technology that wins out. (npr.org)
My own guess is as the sequencing, whole-genome sequencing gets cheaper and cheaper, and as the quality gets better and better, ultimately three years, five years, 10 years, we're all going to be completely sequenced. (npr.org)
Nanopore-inspired systems devoted to understanding how single molecules behave have been extensively developed for applications in genome sequencing. (nist.gov)
Initially illnesses were reported only in the genome sequencing of clinical and environmental samples from the outbreak revealed a new V. parahaemolyticus northern cities of Peru (Cajamarca, Chiclayo, and Piura), clone. (cdc.gov)

A phylogenetic analysis of the strains, set alongside 177 available modern and ancient Y. pestis sequences, suggested that they belonged to a previously undocumented lineage that emerged roughly 4,000 years ago, but already contained the virulence factors that set bubonic plague apart from more innocuous bacteria. (genomeweb.com)
Laboratory technicians from 11 regional countries trained on influenza sequencing and molecular phylogenetic analysis. (who.int)
For this reason, national influenza centres (NICs) across the Region attended an eight-day training workshop to improve the knowledge and skills of laboratory technicians on influenza sequencing and molecular phylogenetic analysis for the timely identification of genetic changes in emerging influenza viruses. (who.int)
The training focused on the basics of sequencing, the phylogenetic analysis of sequences, the identification and interpretation of influenza virus sequence mutations, and the sharing and submission of data to public databases such as GISAID (Global Initiative on Sharing All Influenza Data). (who.int)

Reading DNA through DNA sequencing has expanded access to the information in our genomes. (genome.gov)
Scientists have sequenced the genomes of 16 Anopheles mosquito species from around the world. (sciencedaily.com)
Nora Besansky, O'Hara Professor of Biological Sciences at the University of Notre Dame and a member of the University's Eck Institute for Global Health, has led an international team of scientists in sequencing the genomes of 16 Anopheles mosquito species from around the world. (sciencedaily.com)
These newly sequenced genomes represent a substantial contribution to the scientific resources that will advance our understanding of the diverse biological characteristics of mosquitoes, and help to eliminate diseases that have a major impact on global public health. (sciencedaily.com)
To address these questions, researchers sequenced the genomes of 16 Anopheles species. (sciencedaily.com)
Are lots and lots and lots of people going to get their genomes sequenced, do you think? (npr.org)
The Human Genome Reference Sequence is not an example of one human but represents many different varieties of human genomes. (genome.gov)

There are now several different methods available for DNA sequencing, each with its own characteristics, and the development of additional methods represents an active area of genomics research. (genome.gov)
If anyone could properly consider the ramifications of knowing his or her sequence, it is a clinical geneticist," says professor Gert-Jan B van Ommen, leader of the LUMC team and director of the 'Center for Medical Systems Biology' (CMSB), a center of the Netherlands Genomics Initiative. (eurekalert.org)

By combining whole exome sequencing, machine learning, and network analysis, researchers have identified new, ultra-rare gene mutations within specific biological pathways that may contribute to eating disorders. (news-medical.net)
What's the "value" of exome sequencing in children with neurodevelopmental disorders? (cdc.gov)
Exome sequencing (ES) is increasingly used as part of the genetics evaluation of neurodevelopmental disorders, and acute illness in newborns of suspected genetic origin, among others. (cdc.gov)

The DNA Sequencing Facility is a cross-faculty facility for DNA and cDNA (RNA-Seq) sequencing and is primarily intended for academic research groups based at Lund University. (lu.se)

mbox{ We call such a sequence an arithmetic sequence in } R^2. (physicsforums.com)
harmonic sequence , in mathematics , a sequence of numbers a 1 , a 2 , a 3 ,… such that their reciprocals 1/ a 1 , 1/ a 2 , 1/ a 3 ,… form an arithmetic sequence (numbers separated by a common difference). (britannica.com)
is an arithmetic sequence . (wikibooks.org)

They then sequenced plague-causing pathogens isolated from those individuals, dated at around 3,800 years old. (genomeweb.com)
He noted that further details may be revealed in the future, as still more ancient plague pathogens get the sequencing treatment. (genomeweb.com)

Costs are reduced by indexing ("bar coding") individual template libraries, allowing multiple libraries to be sequenced in each of the flow cell lanes. (utmb.edu)
CTG provides service for sequencing of user-prepared libraries on NovaSeq 6000 and NextSeq2000. (lu.se)
However, as the libraries are not prepared at CTG for these types of projects we cannot guarantee the output of the sequencing run. (lu.se)

1 denotes unique sequences. (cdc.gov)

I just practiced these escape sequences. (unix.com)
As you may have an echo command that can't do escape sequences much like /bin/echo on this OSX machine of mine. (unix.com)
How to remove escape sequences from a text file? (unix.com)
Hello friends, Could anyone please advise on how to remove escape sequences from a text file? (unix.com)
file input.txt input.txt: ASCII English text, with escape sequences I'm able to see those escape characters when opened in vi editor like shown below: ^ but not when I run more. (unix.com)
This document describes all backslash and escape sequences. (perl.org)
the primary purpose of this document is to have a quick reference guide describing all backslash and escape sequences. (perl.org)
It is however guaranteed that backslash or escape sequences never have a punctuation character following the backslash, not now, and not in a future version of Perl 5. (perl.org)

Scientists begin by using molecular scissors to cut the DNA, which is composed of millions of bases (A's, C's, T's and G's), into pieces that are small enough for the sequencing machine to read. (cdc.gov)
Scientists use computer analysis tools to compare sequences from multiple bacteria and identify differences. (cdc.gov)
DNA sequencing and assembly efforts at the Broad Institute were funded by NHGRI and led by Daniel Neafsey, with samples obtained from mosquito colonies maintained through BEI Resources at the United States Centres for Disease Control and Prevention, and wild-caught or laboratory-reared mosquitoes from scientists in Africa, India, Iran, Melanesia and Southeast Asia. (sciencedaily.com)
In an attempt to find the therapeutic properties of the Holy Basil (tulsi), Indian scientists have sequenced the whole genome of the herb, the Council of Scientific and Industrial Research (CSIR) announced on Monday. (livemint.com)
The scientists responsible for assembling and updating such reference sequences aim to provide the highest-quality, best possible consensus representations of the sequence and structural diversity found in the human genome among populations. (genome.gov)
At the completion of the Human Genome Project back in 2003, scientists achieved a major milestone - a DNA sequence that covered 99 percent of the human genome's gene-containing regions and was of 99.99 percent accurate. (genome.gov)

There are various and quite different notions of sequences in mathematics, some of which (e.g., exact sequence) are not covered by the notations introduced below. (wikibooks.org)

Much of our understanding of many such processes derives from the sequencing of the Anopheles gambiae genome in 2002, which was led by Notre Dame researchers and which has since facilitated many large-scale functional studies that have offered numerous insights into how this mosquito became highly specialized in order to live amongst and feed upon humans. (sciencedaily.com)
Researchers have produced the first whole-genome sequence of the Neanderthal genome. (nih.gov)
A human genome reference sequence is an accepted representation of the human genome sequence that is used by researchers as a standard for comparison to DNA sequences generated in their studies. (genome.gov)
Since then, researchers have worked to fill the gaps an improve the inaccuracies in the human genome sequence. (genome.gov)

sequencing-uml-draft-1.png ( 74.9 KB ) - added by Nicklas Nordborg 13 years ago . (lu.se)
sequencing-biomaterials-draft-2.png ( 97.7 KB ) - added by Nicklas Nordborg 13 years ago . (lu.se)

The DNA sequences of Jim Watson, discoverer of the DNA's double helix structure, followed in 2007, and later the DNA of gene hunter Craig Venter. (eurekalert.org)
Outside BASE, align the new sequences to genome or transcript sequences and calculate "intensities" for each gene on the "array design" and dump into a tab delimited raw data file. (lu.se)

Pierre Robin sequence (or syndrome) is a condition in which an infant has a smaller than normal lower jaw, a tongue that falls back in the throat, and difficulty breathing. (medlineplus.gov)
The exact causes of Pierre Robin sequence are unknown. (medlineplus.gov)
Some infants with Pierre-Robin sequence need to sleep on their stomachs instead of their back to prevent their tongue from falling back into their airway. (medlineplus.gov)

Resulting sequences were used to build up final datasets, which additionally included all available paramyxovirus sequences from Eidolon bats and those not assigned to an existing genus. (cdc.gov)

I'm just thinking out loud about how to incorporate high throughput transcriptome sequencing data into BASE. (lu.se)

NEW YORK (GenomeWeb) - By sequencing two Late Bronze Age Yersinia pestis isolates, a team from Germany, Russia, China, and Switzerland has gleaned additional insights into the history of the notorious pathogen behind the bubonic plague. (genomeweb.com)
Even so, an analysis of Bronze Age isolates sequenced by the University of Copenhagen's Eske Willerslev and colleagues in 2015 indicated that those early Eurasian isolates had many known virulence factors but did not contain genetic features compatible with routine transmission to humans via fleas. (genomeweb.com)

Sequencing Only project only includes time on the requested sequencer, requested sequencing reagents and hands-on time from CTG staff for operating the instrument. (lu.se)

Here we present a detailed analysis of the 19 August 2002 Tonga deep earthquake sequences and show evidence for both static and dynamic triggering. (nature.com)
Following in-depth analysis, the sequence will be made public, except incidental privacy-sensitive findings. (eurekalert.org)
2006. Sequencing for quasispecies analysis was done using the method described by Ramachandran et al. (cdc.gov)
0 denotes a consensus sequence with no quasispecies analysis. (cdc.gov)
8 December 2019 - Ensuring the availability of adequate regional and national capacities to perform genetic sequence analysis of influenza viruses is one of the priorities for WHO in the Eastern Mediterranean Region. (who.int)

The sum of a sequence is known as a series, and the harmonic series is an example of an infinite series that does not converge to any limit . (britannica.com)
A sequence of numbers in some set might converge to a number not in that set. (wikiversity.org)
The famous example of this is that a sequence of Rational Numbers might converge, but not to a rational number. (wikiversity.org)
It can be shown that bounded monotonic sequences must converge. (wikibooks.org)

Since you don't remember the name of the software, try asking the librarian: Search IUBio archive ReadMes, Docs & Help files: signal and sequence and predict Here are the results of that search: 1. (bio.net)

DNA sequencing refers to the general laboratory technique for determining the exact sequence of nucleotides, or bases, in a DNA molecule. (genome.gov)
The workshop was held from 27 October to 3 November 2019 in Muscat, Oman, and was attended by laboratory technicians responsible for influenza virus sequencing and the management of influenza virus genetic sequence data in 11 countries in the Region. (who.int)

The second chapter concerns the number of representations of the integers as sums of a given number of elements from a given sequence, and includes the Erdős-Fuchs theorem according to which this number of representations cannot be close to a linear function. (wikipedia.org)
After a chapter on sieve theory and the large sieve (unfortunately missing significant developments that happened soon after the book's publication), the final chapter concerns primitive sequences of integers, sequences like the prime numbers in which no element is divisible by another. (wikipedia.org)
A function from all integers into a set is sometimes called a bi-infinite sequence , since it may be thought of as a sequence indexed by negative integers grafted onto a sequence indexed by positive integers. (wikibooks.org)
If the terms of a sequence are integers, then the sequence is an integer sequence. (wikibooks.org)

A Seq field in a header, footer, annotation, or footnote doesn't affect the sequence numbering that results from Seq fields in the document text. (microsoft.com)
The genome sequence and annotation of Basil provides new insights into the function of genes and the medicinal nature of the metabolites synthesized in this plant. (livemint.com)

is called the harmonic sequence . (wikibooks.org)

The building blocks of proteins are linear sequences of 20 different amino acids. (sciencedaily.com)

Here we design a high-throughput reporter assay called enhancer × promoter self-transcribing active regulatory region sequencing (ExP STARR-seq) and applied it to examine the combinatorial compatibilities of 1,000 enhancer and 1,000 promoter sequences in human K562 cells. (nature.com)
At just $1,000, why not just sequence the whole thing and have it on hand for the future? (npr.org)

A study of nearly 6,000 families, combining three genetic sequencing technologies, finds that mutations that occur after conception play an important role in autism. (news-medical.net)

Existing imitation learning approaches often require that the complete demonstration data, including sequences of actions and states, are available. (aaai.org)
Weimer and Bandoy then looked at 20,000 sequences of SARS-CoV-2 viruses collected and from February to April 2020 in the United Kingdom and compared them with data on cases. (eurekalert.org)
Due length of the sequences, data is available in text files to avoid truncation. (cdc.gov)
1. Create an "array design" with all genes of interest (ideally this would be the largest set possible, e.g. known genes + predicted genes of all qualities, perhaps even predicted genes from the new sequence data). (lu.se)
You will be asked to provide a SampleSheet compatible with the requested sequencer that will allow demultiplexing of the sequencing data (FASTQ files). (lu.se)

If so, i believe one could define an arithmetic or geometric sequence in R^n as well. (physicsforums.com)
is a geometric sequence . (wikibooks.org)

Sequence objects are commonly used to generate unique identifiers for rows of a table. (postgresql.org)

The sequence of the bases (often referred to by the first letters of their chemical names: A, T, C, and G) encodes the biological information that cells use to develop and operate. (genome.gov)
Scientific tags: Sequencing in tissues - Explore biological processes at the single base resolution with novel (micro-)fluidics. (lu.se)
In this project you wil participate in an interdisciplinary research team with the goal of developing state-of-the-art sequencing technologies inside biological tissues. (lu.se)

Whole-genome sequence contigs clone ST-3, which also originated in Asia ( 8 , 12 ). (cdc.gov)
HCV sequence contigs were aligned and edited by hand using DNAstar to construct the final sequence for each isolate. (cdc.gov)

Sequence objects are special single-row tables created with CREATE SEQUENCE . (postgresql.org)
Returns sql used to create sequence object in the database. (eclipse.org)

Only 1 organ from each animal tested positive, except for 1 animal (RC09_Eid_239) which had viral sequences found in kidney, liver, and spleen. (cdc.gov)
The HCV RNA was isolated and sequenced either to determine the genotype of the isolated virus or to determine the viral quasispecies diversity within an infected individual. (cdc.gov)

Final datasets were thus comprised of 74 and 59 sequences (RES-MOR-HEN and PAR fragment, respectively). (cdc.gov)

Establishing the sequence of DNA is key to understanding the function of genes and other parts of the genome. (genome.gov)
Say your doctor wants to sequence a few of your genes, check up on a few things. (npr.org)
The availability of the genome sequence now opens the possibility of identifying genes involved in producing therapeutic molecules and to produce them in vitro (in the lab) according to CSIR. (livemint.com)

Figure 1: Epicentral locations of the two 2002 Tonga deep earthquake sequences. (nature.com)
Figure 2: Vertical cross-section perpendicular to the deep Tonga slab showing the 95% confidence ellipsoid for the location of the triggered 2002 Tonga sequence. (nature.com)
Figure 3: Map showing the location of the first sequence in the 2002 Tonga deep earthquakes, and the calculated static Coulomb stress changes at 585 km ( a ) and 610 km depth ( b ) associated with the mainshock (see Methods). (nature.com)

Templates are sequenced using reversible, fluorescent-tagged terminator nucleotides. (utmb.edu)

Note that there is no reference to the mysterious number A-the convergence is defined purely in terms of the sequence elements being close to each other . (wikiversity.org)

Sequence-specific, single primer amplification and detection of PCR products for identification of hepatitis viruses. (cdc.gov)

On the biologists' site ( http://www.mimg.ucla.edu/faculty/miller_jh/gene2music/examples.html ), you can listen to the compositions and even submit your own genetic sequence and have it translated to music. (sciencedaily.com)

Our facility staff have expertise in most aspects of DNA sequence analyses and can offer help and advice on experimental design, library constructions, analyses and bioinformatics and provides assistance to both beginners and experienced users. (lu.se)

The name (optionally schema-qualified) of a sequence. (postgresql.org)

Recently the completion of the sequences of two Yoruba-Africans was announced. (eurekalert.org)

All organisms (bacteria, vegetable, mammal) have a unique genetic code, or genome, that is composed of nucleotide bases (A, T, C, and G). If you know the sequence of the bases in an organism, you have identified its unique DNA fingerprint, or pattern. (cdc.gov)

The behaviour you are seeing right now is due to Eclipselink attempting to use Identity instead of sequence object on the platforms that don't support sequence objects. (eclipse.org)

Why is sequencing a human genome so expensive? (scienceblogs.com)
The cost of sequencing a human genome is plummeting, and soon many people may obtain a copy of their own. (npr.org)
It cost a lot of money to sequence the first human genome. (npr.org)

Next Generation Sequencing7

Illumina3

Protein16

Genome Sequencing26

Phylogenetic analysis4

Genomes7

Genomics2

Exome3

Lund University1

Arithmetic sequence3

Pathogens2

Libraries3

Unique sequences1

Escape sequences8

Scientists6

Mathematics1

Researchers4

Nicklas Nordborg2

Gene2

Pierre-robin-se3

Paramyxovirus1

Transcriptome1

Isolates2

Reagents1

Analysis5

Converge4

Search1

Laboratory2

Integers4

Annotation2

Harmonic sequence1

Proteins1

1,0002

Mutations1

Data5

Geometric sequence2

Generate1

Biological3

Contigs2

CREATE SEQUENCE2

Viral2

Fragment1

Genes3

20023

Nucleotides1

Terms of the sequence1

Detection1

Genetic sequence1

Facility1

Schema-qualified1

Completion1

Organism1

Platforms1

Human3