Gene Expression ProfilingGene ExpressionGene Expression RegulationQuantitative Trait LociOligonucleotide Array Sequence AnalysisRNA, MessengerChromosome MappingCrosses, GeneticGene Expression Regulation, DevelopmentalTranscription, GeneticPromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionGene Expression Regulation, NeoplasticTranscription FactorsPhenotypeBase SequenceGene Expression Regulation, PlantMolecular Sequence DataGene Expression Regulation, EnzymologicChromosomes, PlantGene Expression Regulation, BacterialGene Expression Regulation, ViralGenetic LinkageChromosomes, MammalianGenetic MarkersDNA-Binding ProteinsCluster AnalysisSignal TransductionCell LineCells, CulturedTranscriptomeModels, GeneticGenes, PlantOryza sativaGene Expression Regulation, FungalEpistasis, GeneticGenes, ReporterInbreedingMice, Inbred C57BLMicroarray AnalysisAnimals, CongenicUp-RegulationMutationGene Regulatory NetworksDNA PrimersSeedsRNABlotting, NorthernTransfectionGenotypeCell DifferentiationGenome, PlantTranscriptional ActivationDown-RegulationIn Situ HybridizationCell Line, TumorTrans-ActivatorsNuclear ProteinsLod ScoreRepressor ProteinsTime FactorsComputational BiologyPolymerase Chain ReactionDNA, ComplementaryGenomeReal-Time Polymerase Chain ReactionDatabases, GeneticExpressed Sequence TagsGenomicsGenetic VariationAlgorithmsLiverArabidopsisAmino Acid SequencePlant LeavesLuciferasesAllelesReproducibility of ResultsSequence Analysis, DNADNAHomeodomain ProteinsSpecies SpecificityTumor Cells, CulturedBinding SitesBlotting, WesternModels, BiologicalOrgan SpecificityZea maysCell NucleusProtein BindingHistonesDisease ResistancePlasmidsMicroRNAsEpigenesis, GeneticMice, Inbred StrainsGenetic VectorsDisease Models, AnimalFlowersMice, Transgenic