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  • determined by X-ray crystallogr
  • Using the Snob program for information-theoretic Minimum Message Length (MML) intrinsic classification, we are able to take the protein dihedral angles as determined by X-ray crystallography, and cluster sets of dihedral angles into groups. (psu.edu)
  • CASP
  • Experimental results show that DeepCNF can obtain ~84% Q3 accuracy, ~85% SOV score, and ~72% Q8 accuracy, respectively, on the CASP and CAMEO test proteins, greatly outperforming currently popular predictors. (arxiv.org)
  • Every two years, the performance of current methods is assessed in the CASP experiment (Critical Assessment of Techniques for Protein Structure Prediction). (wikipedia.org)
  • I-TASSER is the best server for protein structure prediction according to the 2006-2016 CASP experiments (CASP7, CASP8, CASP9, CASP10, CASP11, and CASP12). (wikipedia.org)
  • abstract
  • Abstract Tricodon regions on messenger RNAs corresponding to a set of proteins from Escherichia coli were scrutinized for their translation speed. (bio.net)
  • Background: Although methods based on highly abstract descriptions of protein structures, such as VAST and TOPS, can perform very fast protein structure comparison, the results can lack a high degree of biological significance. (ebscohost.com)
  • Bayesian
  • Previous work by Hunter and States had applied a similar Bayesian classification method, AutoClass, to protein data with site position represented by 3 Cartesian co-ordinates for each of the α-Carbon, β-Carbon and Nitrogen, totalling 9 co-ordinates. (psu.edu)
  • residue
  • Cysteine on the other hand can react with another cysteine residue and thereby form a cross link stabilizing the whole structure. (wikipedia.org)
  • PANAV uses residue-specific and secondary structure-specific chemical shift distributions that were calculated over short (3-6 residue) fragments of correctly referenced proteins (found in RefDB) to identify mis-assigned resonances. (wikipedia.org)
  • mitochondria
  • According to an analysis of the secondary protein structure, TTC39B is most likely to be expressed in the endoplasmic reticulum, mitochondria, and Golgi apparatus. (wikipedia.org)
  • In the cells of extant organisms, the vast majority of the proteins present in the mitochondria (numbering approximately 1500 different types in mammals) are coded for by nuclear DNA, but the genes for some, if not most, of them are thought to have originally been of bacterial origin, having since been transferred to the eukaryotic nucleus during evolution. (wikipedia.org)
  • genes
  • More than twenty distinct IFN genes and proteins have been identified in animals, including humans. (wikipedia.org)
  • In addition, interferons induce production of hundreds of other proteins-known collectively as interferon-stimulated genes (ISGs)-that have roles in combating viruses and other actions produced by interferon. (wikipedia.org)
  • similarity
  • The critical diagnosis of this neoplasm is often difficult because of its similarity with other primary or secondary papillary lesions of the pineal region, including parenchymal pineal tumors, papillary ependymoma, papillary meningioma, choroid plexus papilloma, and metastatic papillary carcinoma. (wikipedia.org)
  • molecules
  • IFNs belong to the large class of proteins known as cytokines, molecules used for communication between cells to trigger the protective defenses of the immune system that help eradicate pathogens. (wikipedia.org)
  • fibers
  • Thanks to the combined action of organic acids-L, mucilages and anthocyanocides, roselle fruits, restore the natural barrier of the hair, rehydrate the Keratin fibers and regenerate its structure. (naturheals.com)
  • Mitral cells also sport secondary dendrites, fibers which connect them laterally with one another via reciprocal synapses that link them to inhibitory local interneurons. (photonics.com)
  • receptors
  • It maps directly onto one of several glomeruli visible in the frame - spherical structures colored green in the image - that gather and transmit raw sensory inputs coming from receptors in the nose. (photonics.com)
  • occurs
  • This symptom however occurs secondary to hydrocephalus, which is a result from compression of the cerebral aqueduct. (wikipedia.org)
  • The species is similar in appearance to Ficus insipida but has smaller leaves, stipules and fruits and only occurs in primary forest whereas F. insipida is also found in secondary forest. (wikipedia.org)
  • indicates
  • p>This indicates the type of evidence that supports the existence of the protein. (uniprot.org)
  • The crystal structure of Sav1866 indicates that ABC transporters may use an alternating access and release mechanism where ATP binding and hydrolysis control the conversion of one state into the other, and that domain swapping and subunit twisting takes place in the transport. (pharmacologicalsciences.us)
  • Translation
  • They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. (wikipedia.org)
  • Applications of BRNN include : Speech Recognition (Combined with Long short-term memory) Translation Handwritten Recognition Protein Structure Prediction Artificial neural network Recurrent neural networks Long short-term memory Schuster, Mike, and Kuldip K. Paliwal. (wikipedia.org)
  • Hydrogen
  • The importance of an antiparallel DNA double helix structure is because of its hydrogen bonding between the complimentary nitrogenous base pairs. (wikipedia.org)
  • If the DNA structure were to be parallel, the hydrogen bonding would not be possible, as the base pairs would not be paired in the known way. (wikipedia.org)
  • brain
  • For example, recently, scientists have reported that some species in the microbiome can promote protein buildup in the brain. (medicalxpress.com)
  • data
  • Data also suggested statistically-significant differences in plasmalogen metabolism between Alzheimer's and comparison groups, and that some of the plasmalogen levels were correlated with cerebrospinal fluid (CSF) levels of total tau protein. (medicalxpress.com)
  • cell
  • Genetic combinatorial marking using lentiviral vectors encoding fluorescent proteins (FPs) enabled cell fate mapping through advanced microscopy imaging. (jove.com)
  • Short coding motifs, which appear to lack secondary structure, include those that label proteins for delivery to particular parts of a cell, or mark them for phosphorylation. (wikipedia.org)
  • primary
  • A more recently proposed classification of oral candidiasis distinguishes primary oral candidiasis, where the condition is confined to the mouth and perioral tissues, and secondary oral candidiasis, where there is involvement of other parts of the body in addition to the mouth. (wikipedia.org)
  • database
  • p>An evidence describes the source of an annotation, e.g. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc. (uniprot.org)
  • However
  • However, an anti-parallel beta sheet is significantly more stable than a parallel structure due to their well aligned H-bonds, which are at a nighty degree angle. (wikipedia.org)
  • target
  • a href='/help/protein_existence' target='_top'>More. (uniprot.org)
  • TPR motifs that are arranged one in front of another create a right-handed helical structure with an amphipathic channel which could possibly accommodate the complementary region of a target protein. (wikipedia.org)
  • majority
  • The main feature within tetratricopeptide repeat 39B is the domain of unknown function 3808 (DUF3808), spanning the majority of the protein. (wikipedia.org)
  • function
  • The tumor cells may differ in their structure and function, but they all have normal function, which is directed by the deoxyribonucleic acid, or DNA. (wikipedia.org)
  • contain
  • Spider monkeys (Ateles geoffroyi) also feed on the leaves, which contain 11% protein and 4% sugars and remain similar in chemical composition throughout their lifespan, unlike most tree species. (wikipedia.org)
  • likely
  • They are absent in the clade Neodermata, most likely due to a secondary loss of this feature because their epidermis is turned into a syncytium in adult forms. (wikipedia.org)
  • Small
  • Small volumes of AK1 recombinant protein vial(s) may occasionally become entrapped in the seal of the product vial during shipment and storage. (mybiosource.com)
  • region
  • Isoform 2 uses an alternate in-frame splice site in the central coding region, compared to variant 1, which results in a shorter protein. (wikipedia.org)
  • Host
  • Interferons (IFNs) are a group of signaling proteins made and released by host cells in response to the presence of several pathogens, such as viruses, bacteria, parasites, and also tumor cells. (wikipedia.org)
  • five
  • An umbrella organization, the BCSB operates five protein crystallography beamlines at the Advanced Light Source (ALS). (mitegen.com)