PhylogenyBayes TheoremSequence Analysis, DNAMolecular Sequence DataEvolution, MolecularBase SequenceModels, GeneticSoftwareAmino Acid SequenceSequence AlignmentNucleotidesCloning, MolecularLikelihood FunctionsSequence Homology, Nucleic AcidBiological EvolutionAlgorithmsFossilsRNA, Ribosomal, 18SMarkov ChainsGenetic VariationGenes, BacterialComputational BiologyDNA, MitochondrialGenesDNA, RibosomalDNA Restriction EnzymesRestriction MappingDNADNA, BacterialEscherichia coliMonte Carlo MethodCodonOpen Reading FramesSpecies SpecificitySequence Homology, Amino AcidPlasmidsNucleic Acid ConformationPolymorphism, Single NucleotideComputer SimulationPolymerase Chain ReactionGenes, ViralNucleic Acid HybridizationTranscription, GeneticGenome, ViralBacterial ProteinsAdenine NucleotidesDNA, ViralRNA, ViralRNA, MessengerChromosome MappingMutationRepetitive Sequences, Nucleic AcidBase CompositionOperonDNA PrimersGuanine NucleotidesDNA, ComplementaryRNA, RibosomalSequence AnalysisPurine NucleotidesGenomicsDNA, RecombinantBlotting, SouthernViral ProteinsMolecular WeightGenotypeGene LibraryDatabases, Nucleic AcidMultigene FamilyProtein BiosynthesisSequence HomologyGenomeHigh-Throughput Nucleotide SequencingDNA Transposable ElementsDNA, FungalPlant VirusesDNA, Ribosomal SpacerDatabases, GeneticRNA, Ribosomal, 16SPromoter Regions, GeneticMolecular Sequence AnnotationRNA, BacterialIntronsBinding SitesOligonucleotide ProbesPlantsRNARecombination, GeneticConserved SequenceGenetic CodeExpressed Sequence TagsOligoribonucleotidesExonsGenomic LibraryGenes, RegulatorGenes, FungalRNA, TransferAllelesGenome, BacterialHaplotypes