Evolution, MolecularDirected Molecular EvolutionPhylogenySelection, GeneticProteinsModels, GeneticMolecular Sequence DataAmino Acid SubstitutionMutation RateSequence AlignmentAdaptation, BiologicalAmino Acid SequenceGenetic VariationSpecies SpecificityVolvoxDNA ShufflingSequence Analysis, ProteinMononegaviralesLikelihood FunctionsMammalsCodonDrosophilaMutationEukaryotaProtein FoldingBiological EvolutionBase SequenceComputational BiologyPrimatesGenome, InsectModels, MolecularGenes, DuplicateDatabases, ProteinGenomeComputer SimulationGenes, InsectSequence Analysis, DNASequence Homology, Amino AcidMultigene FamilyProtein Structure, TertiaryCultural EvolutionProtein EngineeringConserved SequenceAmino AcidsGenomicsAdaptation, PhysiologicalGenetic CodeProtein ConformationAlgorithmsClonal EvolutionDrosophila melanogasterModels, BiologicalIntronsPolymorphism, GeneticModels, StatisticalProtein Structure, SecondaryProtein StabilityInsect ProteinsEpistasis, GeneticSequence Homology, Nucleic AcidMutagenesisGenetics, PopulationDrosophila ProteinsEscherichia coliRecombination, GeneticFossilsX ChromosomeGene DuplicationGene LibraryDatabases, GeneticSaccharomyces cerevisiaeBacterial ProteinsHydrophobic and Hydrophilic InteractionsEvolution, ChemicalHominidaeGene Transfer, HorizontalProteomeThermodynamicsEnzyme StabilityBinding SitesGenetic SpeciationModels, ChemicalAmino Acid MotifsSoftwareAngiospermsSyntenyGenome, BacterialStructure-Activity RelationshipInvertebratesPseudogenesEscherichia coli ProteinsPan troglodytesReproductionGenetic DriftPlantsMutagenesis, Site-DirectedGenome, PlantSaccharomyces cerevisiae ProteinsChordata, NonvertebrateGenetic Fitness