Evolution, MolecularDirected Molecular EvolutionPhylogenyProteinsSelection, GeneticModels, GeneticAmino Acid SubstitutionMutation RateMolecular Sequence DataVolvoxSequence AlignmentAdaptation, BiologicalAmino Acid SequenceMononegaviralesDNA ShufflingSequence Analysis, ProteinBiological EvolutionProtein FoldingGenetic VariationCodonDrosophilaLikelihood FunctionsSpecies SpecificityMammalsEukaryotaMutationComputational BiologyDatabases, ProteinGenome, InsectModels, MolecularGenes, DuplicateGenes, InsectComputer SimulationProtein EngineeringAmino AcidsProtein Structure, TertiaryBase SequencePrimatesSequence Homology, Amino AcidGenomeGenetic CodeProtein ConformationMultigene FamilyConserved SequenceAlgorithmsGenomicsEpistasis, GeneticModels, StatisticalSequence Analysis, DNAProtein Structure, SecondaryProtein StabilityAdaptation, PhysiologicalPolymorphism, GeneticDrosophila melanogasterGene DuplicationIntronsMutagenesisInsect ProteinsDrosophila ProteinsModels, BiologicalEscherichia coliX ChromosomeGenetics, PopulationCultural EvolutionHydrophobic and Hydrophilic InteractionsGene LibraryDatabases, GeneticSaccharomyces cerevisiaeSequence Homology, Nucleic AcidRecombination, GeneticThermodynamicsBacterial ProteinsProteomeEnzyme StabilityModels, ChemicalClonal EvolutionAmino Acid MotifsStructure-Activity RelationshipBinding SitesSoftwareEscherichia coli ProteinsMutagenesis, Site-DirectedSaccharomyces cerevisiae ProteinsFossilsEvolution, ChemicalHominidaeGene Transfer, HorizontalGenetic SpeciationAngiospermsSyntenyGenome, BacterialInvertebratesPseudogenesPan troglodytesReproductionGenetic DriftPlantsGenome, PlantChordata, NonvertebrateGenetic Fitness