GenomesEukaryotic and prokaryoticProteinsOrganismsCytoplasmBacterialRibosomeProteinGenesArchaeaSpeciesEukaryotesBacteriaPolymeraseCellsVirulenceSystematicallyCharacterizationBindsMechanismInfectionPurificationTranscription factorTetracyclineFamily of transcription factorsSystemsCellSoilMolecularRoleNuclearInhibitionFoundStructureExpressionBinding sitesMicrobial communityGeneCommunityResistanceResultsDomain
Genomes11
- An overview of prokaryotic transcription factors : a summary of function and occurrence in bacterial genomes. (nih.gov)
- We describe an application of de Bruijn graphs to analyze the global repeat structure of prokaryotic genomes. (biomedcentral.com)
- Further, we demonstrate that the majority of genes in prokaryotic genomes can be reconstructed uniquely using very short reads even if the genomes themselves cannot. (biomedcentral.com)
- In the past year, they note that some 10,000 microbial genome assemblies have been publicly released, and the RefSeq prokaryotic genome dataset now contains more than 28,000 genomes representing more than 5,000 species. (genomeweb.com)
- Avoidance of palindromic recognition sites of Type II restriction-modification (R-M) systems was shown for many R-M systems in dozens of prokaryotic genomes. (biomedcentral.com)
- We have studied all known recognition sites in thousands of prokaryotic genomes and found factors that influence their avoidance. (biomedcentral.com)
- The avoidance of orthodox Type II R-M system recognition sites in prokaryotic genomes is a widespread phenomenon. (biomedcentral.com)
- It is very common in prokaryotic genomes, but has not been found in appreciable amounts in eukaryotic DNA. (epigenie.com)
- We used the ab initio frameshift prediction program, GeneTack, to detect reading frame transitions in 206 991 genes (fs-genes) from 1106 complete prokaryotic genomes. (ucc.ie)
- Using these approaches we identified 99,073 prokaryotic and 751 eukaryotic genomes, and propose a method for reducing the redundancy of single-celled eukaryotic MAGs at the species level. (researchsquare.com)
- Comparison of the three genomes sequenced here to all publicly available, high-quality B. cereus s.l. genomes (n = 2890 total genomes) demonstrated that genomes associated with each case effectively belonged to separate species at the conventional 95% average nucleotide identity prokaryotic species threshold. (cdc.gov)
Eukaryotic and prokaryotic2
- Although eukaryotic and prokaryotic DNA replication share a similar underlying mechanism, there are notable distinctions due to the larger size and more complex structure of eukaryotic DNA. (microbiologynote.com)
- In this study we report a workflow for the recovery of eukaryotic and prokaryotic MAGs from public data covering a range of biomes. (researchsquare.com)
Proteins5
- The small subunit, both the rRNA and its proteins, complexes with the large 50S subunit to form the 70S prokaryotic ribosome in prokaryotic cells. (wikipedia.org)
- The multifunctional regulator nuclear factor erythroid 2-related factor (Nrf2) is considered not only as a cytoprotective factor regulating the expression of genes coding for anti-oxidant, anti-inflammatory and detoxifying proteins, but it is also a powerful modulator of species longevity. (springer.com)
- The Type VI Secretion System (T6SS) is a multiprotein device that has emerged as an important fitness and virulence factor for many Gram-negative bacteria through the injection of effector proteins into prokaryotic or eukaryotic cells via a contractile mechanism. (frontiersin.org)
- Protein secretion systems are molecular machines used by bacterial cells to translocate specific sets of proteins out of the bacterial cell, either to the extracellular milieu or directly into target cells (eukaryotic or prokaryotic. (dundee.ac.uk)
- Secretion systems, and the diverse proteins that they secrete, represent key virulence factors against eukaryotic host organisms. (dundee.ac.uk)
Organisms6
- Single cells and organisms may adapt to harmful oxidative stress conditions, through stress-activated factors. (springer.com)
- Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms. (openwetware.org)
- Organisms can be classified on the basis of several different factors. (toppr.com)
- Depending on whether cells of the organisms are prokaryotic or eukaryotic, organisms can be classified into two categories. (toppr.com)
- Prokaryotic organisms have prokaryotic cells, in which nuclei and cell organelles are not demarcated clearly. (toppr.com)
- DNA replication is a prerequisite for cell division in both prokaryotic and eukaryotic organisms. (microbiologynote.com)
Cytoplasm3
- Prokaryotic transcription occurs in cytoplasm while eukaryotic transcription occurs in nucleus. (justaaa.com)
- Glycolysis takes place in the cytoplasm of both prokaryotic. (wwwrxsale.online)
- It takes place in the cytoplasm where associated enzymes and factors are located. (wwwrxsale.online)
Bacterial4
- These antibiotics specifically target the prokaryotic ribosomes, hence their usefulness in treating bacterial infections in eukaryotes. (wikipedia.org)
- 2023. Editorial: Role of Transcription Factors and Sigma Factors in Bacterial Stress. (openwetware.org)
- As the bulk of prior studies of SCTLD in coral tissues have primarily investigated the associated bacterial community, we chose to characterize the prokaryotic community associated with all mesocosm 0.22 µm pore size filters using Illumina sequencing of the V4 region of the 16S rRNA gene. (usgs.gov)
- More commonly, however, the target is rival bacterial cells, making the T6SS a key player in inter-bacterial competition and competitive fitness, and therefore an indirect virulence factor. (dundee.ac.uk)
Ribosome2
- The prokaryotic small ribosomal subunit, or 30S subunit, is the smaller subunit of the 70S ribosome found in prokaryotes. (wikipedia.org)
- Elongation factor P (EF-P) stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. (embl-heidelberg.de)
Protein8
- Next, the 50S subunit binds and a guanosine triphosphate is cleaved to guanosine diphosphate and inorganic phosphate, thus dissociating the initiation factors and resulting in protein translation. (wikipedia.org)
- The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. (embl-heidelberg.de)
- Detection of an inducible membrane protein associated with R-factor-mediated tetracycline resistance. (microbiologyresearch.org)
- The NMR structure of Ros87 shows that the putative prokaryotic Cys2His 2 zinc-finger sequence is indeed part of a significantly larger zinc-binding globular domain that possesses a novel protein fold very different from the classical fold reported for the eukaryotic classical zinc-finger. (cnr.it)
- losses in Molecular Biology: High Throughput Protein Expression and Purification, modelling A non-ignorable free Designing for Human Reliability: Human Factors rupture for academic and multivariate browser promoter in additional sets. (scoutconnection.com)
- The DB region, comprised of the 10-15 codons immediately downstream of the start codon, has previously been shown to be an important factor in determining foreign protein accumulation in chloroplasts and in other prokaryotic systems through an unknown mechanism. (cornell.edu)
- These differences in codon usage preferences were exploited to design codonoptimized DB regions for high-level foreign protein production in chloroplasts and other prokaryotic hosts. (cornell.edu)
- To limit these processes with the initiation of smart monitoring systems would require an increased understanding of the factors that influence protein A affinity purification performance loss, though this knowledge is not currently available. (avacta.com)
Genes4
- A cmlB mutant accumulated tetracycline at a threefold] lower rate than the wild-type strain, and it is proposed that the mutants have an altered permeability to the drugs and that this acts syner-gistically with the products of the R factor chloramphenicol and tetracycline resistance genes. (microbiologyresearch.org)
- Characteristics of some single step mutants to chloramphenicol resistance in Escherichia coli K12 and their interactions with R-factor genes. (microbiologyresearch.org)
- In order to better understand the impact of crop management systems on the soybean-associated microbiome, we employed DNA amplicon sequencing of the Internal Transcribed Spacer ( ITS ) region and 16S rRNA genes to analyze fungal and prokaryotic communities associated with soil, roots, stems, and leaves. (msu.edu)
- Most of the free Designing for Human Reliability: Human Factors Engineering in the and data are based from the Taking genes. (scoutconnection.com)
Archaea2
- The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. (embl-heidelberg.de)
- Bacteria and archaea are prokaryotic cells. (sciencedaily.com)
Species3
- Deterministic processes assume that community composition is driven by environmental factors leading to species sorting 24 . (nature.com)
- While workflows for the recovery of prokaryotic MAGs are established, MAGs of eukaryotic species are seldom reported. (researchsquare.com)
- While much attention has been given to the prokaryotic species and their functional capacity 2 - 4 , microbial eukaryotes such as fungi also perform key roles in many environments, for example by making carbon available and by creating new environments 5 . (researchsquare.com)
Eukaryotes1
- Prokaryotes do not require initiation factors for initiation while eukaryotes require transcription initiation factors. (justaaa.com)
Bacteria2
- The biomass of bacteria was mostly predominant in the prokaryotic community, while within the autotrophic community Synechococcus biomass mostly predominated. (biomedcentral.com)
- These results highlight the potential impact of gene regulation in the adaptation of bacteria to the different habitats through the distribution of their regulatory potential among specific functions, and point to critical environmental factors that challenge the growth of any microbial community. (biomedcentral.com)
Polymerase1
- Prokaryotic RNA polymerase is made up of five subunits while eukaryoteic RNA polymerase have 10-17 subunits. (justaaa.com)
Cells6
- 1] Cell nature -Are cells Prokaryotic or Eukaryotic? (toppr.com)
- The origin of the eukaryotic nucleus must indeed be a milestone in the development of the cell itself, considering that it is the defining factor that sets eukaryotic cells apart from the other broad category of cells -- the prokaryotic cell. (sciencedaily.com)
- Prokaryotic cells do not contain such compartmentalization. (sciencedaily.com)
- These target cells can be eukaryotic host cells, making the T6SS a classical virulence factor. (dundee.ac.uk)
- What are the differences in transcription in prokaryotic and eukaryotic cells? (justaaa.com)
- Question:What are the differences in transcription in prokaryotic and eukaryotic cells? (justaaa.com)
Virulence2
- Furthermore, indole and its derivatives are viewed as potential antivirulence compounds against antibiotic-resistant pathogens because of their ability to inhibit quorum sensing and virulence factor production. (nih.gov)
- A clonal distribution of virulence factors may account for severe and fatal cases of bacteremia caused by invasive GCGS. (cdc.gov)
Systematically1
- To address this, we developed new approaches to improve the recovery of eukaryotic MAGs and applied these to large collections of assembled metagenomes in an effort to systematically identify both prokaryotic and eukaryotic MAGs. (researchsquare.com)
Characterization2
- Phenotypic characterization of R factor tetracycline resistance determinants. (microbiologyresearch.org)
- In this article we report the NMR solution structure of Ros DNA-binding domain (Ros87), providing 79 structural characterization of a prokaryotic Cys2His2 zinc-finger domain. (cnr.it)
Binds1
- It binds three prokaryotic initiation factors: IF-1, IF-2, and IF-3. (wikipedia.org)
Mechanism2
- free Designing for Human Reliability: Human Factors Engineering in the Oil, in selection of during virtue mechanism. (scoutconnection.com)
- The generic dynamic perturbation factor is less than 2 at room temperature and exhibits a maximum near 260 K. The dynamic perturbation is induced by H-bond constraints that interfere with the cooperative mechanism that facilitates rotation in bulk water. (lu.se)
Infection3
- You will learn the mechanisms underlying immunity, and factors controlling resistance and susceptibility to infection, including latent and chronic infections. (le.ac.uk)
- Nocardiosis has a variable prognosis, depending on the site of infection, extent of infection, and underlying host factors. (medscape.com)
- We present 2 recent cases of severe pneumonia in welders with B. cereus group infections and discuss potential risk factors for infection and treatment options, including antitoxin. (cdc.gov)
Purification2
- Prokaryotic expression and purification of porcine Sox6" by WANXUE WEN, XIAOLING CHEN et al. (tubitak.gov.tr)
- This potential for new biopharmaceuticals and drugs to be easily purified at lower cost, through the use of prokaryotic systems is a major factor in the increased interest in and uptake of alternative affinity reagents for affinity purification applications across both research and industrial fields. (avacta.com)
Transcription factor3
- encoded by Nfe2l2 gene) is a transcription factor responsible for the regulation of cellular redox balance and protective antioxidant and phase II detoxification responses in mammals [ 1 , 2 ]. (springer.com)
- 2023. Comparative genomics sheds light on transcription factor-mediated regulation in the extreme acidophilic Acidithiobacillia representatives. (openwetware.org)
- The AhR is a transcription factor regulating development, reproduction and metabolism. (bvsalud.org)
Tetracycline4
- Also, the levels of R factor-determined resistance to these drugs were increased by this host mutation and tetracycline resistance was expressed constitutively. (microbiologyresearch.org)
- Tetracycline-sensitive mutants of the F-like R factors R100 and R100-1. (microbiologyresearch.org)
- R-factor with a mutation in the tetracycline resistance marker. (microbiologyresearch.org)
- Analysis of the resistance mediated by several R factors to tetracycline and minocycline. (microbiologyresearch.org)
Family of transcription factors2
- Nrf2 is a master eukaryotic redox-active factor and belongs to Cap 'n' Collar (Cnc)-bZIP (basic leucine zipper) family of transcription factors. (springer.com)
- Sox6, a member of the Sox (Sry-related HMG box) family of transcription factors, plays an important role in embryonic muscle development and adult fast myofiber maintenance. (tubitak.gov.tr)
Systems1
- This review presents current knowledge regarding indole and its derivatives, their biotechnological applications and their role in prokaryotic and eukaryotic systems. (nih.gov)
Cell1
- In both prokaryotic and eukaryotic DNA replications, one old and one new strand are present in the daughter cell, making them semi-conservative DNA replications. (microbiologynote.com)
Soil2
- Barcoded 454 pyrosequencing of taxonomic gene markers was used to describe the microbial communities in adjacent soil, freshwater and sediment samples and study the role of biotic and spatial factors in shaping their composition. (nature.com)
- Among the functions with highest regulatory potential in each niche, we found significant enrichment of processes related to sensing and buffering external variable factors specific to each environment, like for example, the availability of co-factors in deep sea, of oligosaccharides in soil and the regulation of pH in the acid mine. (biomedcentral.com)
Molecular1
- In this module you will learn about the molecular and cellular biology of the key pathogens (viral, prokaryotic and eukaryotic) which currently threaten human populations, and the mechanisms that account for the pathogenesis of many of these diseases. (le.ac.uk)
Role1
- This review summarizes our knowledge about Nrf2 and HO-1 across different phyla suggesting their conservative role as stress-protective and anti-aging factors. (springer.com)
Nuclear1
- green free Designing for Human Reliability: Human Factors Engineering data for nuclear and EM algorithm replacement. (scoutconnection.com)
Inhibition2
- Mammalian NDK is also known as metastasis inhibition factor nm23. (embl.de)
- Inhibition of fertility by multiple drug-resistance factor (R) in Escherichia coli K-12. (microbiologyresearch.org)
Found2
- These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology ( PUBMED:15210970 ). (embl-heidelberg.de)
- Prokaryotic SLPs are mostly found in anaerobes. (bvsalud.org)
Structure1
- The course includes following subjects: Structure and characteristic properties of prokaryotic microorganisms, i.e. (ntnu.edu)
Expression1
- Western free Designing for Human Reliability: Human Factors policy by efficient prostate-specific expression target in Additional points: measurement of the study and standard molecules. (scoutconnection.com)
Binding sites2
- These enhancer SNPs, they added, were overexpressed at the binding sites of certain liver transcription factors. (genomeweb.com)
- For this, we have developed a computational protocol to extract regulatory regions and their corresponding transcription factors binding sites directly from metagenomic reads and applied it to three well known environments: Acid Mine, Whale Fall, and Waseca Farm. (biomedcentral.com)
Microbial community1
- Shifts in microbial community composition were influenced by fluctuations in environmental factors within the mangrove forests of the Red Sea influenced by seasonal changes in sea level. (frontiersin.org)
Gene1
- allows binding of transcription factors on outer DNA helix gene silencing (NO TRANSCRIPTION)! (freezingblue.com)
Community1
- This paper addresses the dynamics of the prokaryotic picoplankton community in the coastal and open sea areas of the central Adriatic and in the coastal area of the southern Adriatic. (biomedcentral.com)
Resistance2
- Changes in permeability to tetracyclines in Escherichia coli bearing transmissible resistance factors. (microbiologyresearch.org)
- Transduction of resistance factors. (microbiologyresearch.org)
Results2
- However, several factors outside of our control confounded the transmission results, rendering them inconclusive. (usgs.gov)
- Results indicated that sample origin was the main driver of beta diversity in soybean-associated microbial communities, but management regime and plant growth stage were also significant factors. (msu.edu)
Domain1
- The first putative prokaryotic Cys2His2 zinc-finger domain has been identified in the transcriptional regulator Ros from Agrobacterium tumefaciens, indicating that the Cys2His2 zinc-finger domain, originally thought to be confined to the eukaryotic kingdom, could be widespread throughout the living kingdom from eukaryotic, both animal and plant, to prokaryotic. (cnr.it)