PhylogenyEvolution, MolecularSequence Analysis, DNAMolecular Sequence DataSpecies SpecificityLikelihood FunctionsModels, GeneticDirected Molecular EvolutionSequence AlignmentGenetic VariationFossilsBase SequenceBiological EvolutionSelection, GeneticGenetic SpeciationDNA, MitochondrialBayes TheoremAmino Acid SequenceGene Transfer, HorizontalDNA, RibosomalDNA, Ribosomal SpacerMultigene FamilyPrimatesMammalsGenome, MitochondrialAngiospermsCultural EvolutionGenomeDNA, ChloroplastPhylogeographyRNA, Ribosomal, 18SInvertebratesAdaptation, BiologicalRNA, Ribosomal, 28SRNA, Ribosomal, 16SClassificationEukaryotaGenome, BacterialSequence Homology, Nucleic AcidHominidaeGeographyDNA, PlantArthropodsGenomicsPlantsComputational BiologyGenes, MitochondrialConserved SequenceSequence Homology, Amino AcidClonal EvolutionSymbiosisPlastidsFishesEcosystemSyntenyCluster AnalysisBacteriaGymnospermsAlgorithmsBiodiversityGenome, PlantExtinction, BiologicalArchaeaRNA, RibosomalMutationGene OrderSequence HomologyPaleontologyLizardsGenes, PlantComputer SimulationAdaptation, PhysiologicalAscomycotaIntronsGenetics, PopulationModels, BiologicalEukaryotic CellsDNA, BacterialCetaceaDNA, IntergenicRecombination, GeneticPolymerase Chain ReactionSoftwarePseudogenesFungiPlatyhelminthsGenes, rRNAProkaryotic CellsChlorophytaPan troglodytesAnthocerotophytaGenes, ArchaealChromosome MappingChordataGenetic DriftGene DuplicationDNA PrimersEcologyCodonDrosophila