- The present study deals with the taxonomy and morphology of the immature stages of the Diptera family Calliphoridae (blowflies). (dur.ac.uk)
- Clarke, Julia A. (2004): Morphology, Phylogenetic Taxonomy, and Systematics of Ichthyornis and Apatornis (Avialae: Ornithurae). (wikipedia.org)
- Phylogenetic analyses of postcranial skeletal morphology in Didelphid marsupials. (andrewisles.com)
- In addition, the taxonomy and phylogenetic position of fungi is often still based on morphology alone which has proven insufficient to resolve certain taxonomic groups. (slf.ch)
- Phylogenetic analyses revealed that this specimen, along with other snake sloughs and skins collected from different localities in the Turpan Basin formed a clade that is sister to Psammophis lineolatus . (mapress.com)
- We attempt to elucidate evolutionary processes, both at the macro and micro scale, through morphological and molecular phylogenetic reconstruction and phylogeographical analyses ( www.figweb.org ). (figweb.org)
- At local scales, phylogenetic analyses can be used to identify exposure sources within a small population (Azarian et al. (springer.com)
- Phylogenetic studies on Didelphid marsupials [part two]: nonmolecular data and new IRBP squences: seperate and combined analyses of Didelphine relationships with denser taxon sampling. (andrewisles.com)
- Using this database and making use of modern genetic and phylogenetic techniques I would like to answer questions like: Are morphological and genetic data congruent between certain fungal groups and if not, can we find and define new morphological characters to help amateur mycologists to cope with the outcome of genetic analyses? (slf.ch)
- Identification methods are conceptually easier to interpret than molecular phylogenetic analyses and are often preferred when the groups are well understood. (asm.org)
- Phylogenetic relationships and species delimitation among the taxa with propagula in Pseudotaxiphyllum (Plagiotheciaceae, Bryophyta) [J]. J Syst Evol, 2015, 53(2): 179-190. (jse.ac.cn)
- Phylogenetic nomenclature is a method of nomenclature for taxa in biology that uses phylogenetic definitions for taxon names as explained below. (wikipedia.org)
- We present optimal linear time algorithms for computing the Shapley values and 'heightened evolutionary distinctiveness' (HED) scores for the set of taxa in a phylogenetic tree. (biomedcentral.com)
- The phylogenetic relationships at the base of the stylommatophoran land snails and slugs have proven to be controversial, particularly the position of the Scolodontidae in relation to other stylommatophoran taxa. (nottingham.ac.uk)
- Several studies reported that the phylogenetic structure of disjunctly distributed bryophyte species reflects their geographical ranges rather than morphological disparities. (jse.ac.cn)
- Crown node: Most recent common ancestor of the sampled species of the clade of interest Stem node: Most recent common ancestor of the clade of interest and its sister clade In the PhyloCode, only a clade can receive a "phylogenetic definition", and this restriction is observed in the present article. (wikipedia.org)
- However, it is also possible to create definitions for the names of other groups that are phylogenetic in the sense that they use only ancestral relations anchored on species or specimens. (wikipedia.org)
- A phylogenetic network N has vertices corresponding to species and arcs corresponding to direct genetic inheritance from the species at the tail to the species at the head. (biomedcentral.com)
- According to current molecular taxonomy, dermatophytes consist of 59 species in 9 genera ( 1 ). (cdc.gov)
- We suggest using a phylogenetic framework of pathogens and their infected host species for insight into which animals may serve as reservoirs. (springer.com)
- In 2002, an ad hoc committee for the reevaluation of species definition in bacteriology ( 24 ) advised that all new bacterial species descriptions include an rRNA sequence from the type strain, and in 2001, Bergey's Trust published a revised higher-order taxonomy attempting to reconcile bacterial taxonomy with rRNA-based phylogeny ( 12 , 13 ). (asm.org)
- Overview of peer-reviewed articles published on Felidae (N = 2205) and Canidae (N = 2146) species from 2013 to 2017, subdivided in the following topics: 1) ecology and behaviour, (2) conservation and wildlife management, (3) anatomy and physiology, (4) diseases and other health issues, (5) captive housing and artificial reproduction, (6) genetic diversity and phylogenetic structure, (7) taxonomy and palaeoecology. (databasefootball.com)
- Guide to African Mammals (13) and the taxonomy described tion has so far been documented in 26 primate species, and 20 by Colin Groves (14). (cdc.gov)
- You will have a good knowledge of traditional systematic methods as well as modern phylogenetic and molecular tools, allowing you to make scientific descriptions of new species, generate DNA data such as barcodes and use computerized biodiversity databases. (lu.se)
- More than 200 research papers on the molecular phylogeny and phylogenetic biogeography of bryophytes have been published since the beginning of this millenium. (jse.ac.cn)
- Phylogenetic biogeography and taxonomy of disjunctly distributed bryophytes[J]. J Syst Evol, 2009, 47(5): 497-508. (jse.ac.cn)
- 3.2 Constructing phylogenetic trees 3.3 Uses of phylogenetic trees: reconstructing the evolution of organismal traits, historical biogeography. (bangor.ac.uk)
- My research interest involves on the biodiversity, taxonomy and biogeography of mushrooms from Southeast Asia. (peerj.com)
- Wiley, E. O. (1981) Phylogenetics: The Theory and Practice of Phylogenetic Systematics. (berkeley.edu)
- The Ribosomal Database Project (RDP) Classifier, a naìˆve Bayesian classifier, can rapidly and accurately classify bacterial 16S rRNA sequences into the new higher-order taxonomy proposed in Bergey's Taxonomic Outline of the Prokaryotes (2nd ed., release 5.0, Springer-Verlag, New York, NY, 2004). (asm.org)
- Phylogenetic nomenclature is currently regulated by the International Code of Phylogenetic Nomenclature (PhyloCode). (wikipedia.org)
- Shared derived characters (evolutionary novelties), not primitive characters, were used to define the various evolutionary lineages in a systematic phylogenetic analysis of the order. (encyclopedia.com)
- Molecular analysis identified five new phylogenetic SIV lineages. (cdc.gov)
- Phylogenetic placement of Yunnanopilia (Opiliaceae) inferred from molecular and morphological data [J]. J Syst Evol, 2018, 56(1): 48-55. (jse.ac.cn)
- They are organized by morphological taxonomy due to the uncertainty surrounding their phylogenetic identities. (confex.com)
- Phylogenetic relationships of Mormoopid bats (Chiropters: Moroopidae) based on morphological data. (andrewisles.com)
- Phylogenetic nomenclature ties names to clades, groups consisting of an ancestor and all its descendants. (wikipedia.org)
- Phylogenetic nomenclature allows the use, not only of ancestral relations, but also of the property of being extant. (wikipedia.org)
- The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information. (nih.gov)
- Although taxonomy is often used informally to evaluate the results of phylogenetic inference and the root of phylogenetic trees, algorithmic methods to do so are lacking. (biomedcentral.com)
- de Queiroz, K. and S. Poe (2001) Philosophy and phylogenetic inference: a comparison of likelihood and parsimony methods in the context of Karl Popper's writings on corroboration. (berkeley.edu)
- Phylogenetic networks are generalizations of phylogenetic trees, that are used to model evolutionary events in various contexts. (biomedcentral.com)
- Evolutionary Trees and their Meaning 3.1 What are phylogenetic trees and what do they tell us? (bangor.ac.uk)
- Phylogeny and taxonomy of Afrocayratia , a new genus of Vitaceae from continental Africa and Madagascar [J]. J Syst Evol, 2020, 58(6): 1090-1107. (jse.ac.cn)
- Phylogenetic analysis resulted in a tree in general agreement with the current taxonomy of the genus. (usda.gov)
- The results from leave-one-out testing on both corpora show that the overall accuracies at all levels of confidence for near-full-length and 400-base segments were 89% or above down to the genus level, and the majority of the classification errors appear to be due to anomalies in the current taxonomies. (asm.org)
- The second use of phylogenetic information, and our focus, is to predict relationships among pathogens and their hosts and/or vectors. (springer.com)
- Likewise, the phylogenetic relationships within the hygrophilan freshwater snails and limpets are uncertain. (nottingham.ac.uk)
- This study provides molecular phylogenies for the Stylommatophora and Hygrophila at multiple scales including deep phylogenetic relationships of the major stylommatophoran and hygrophilan clades and family level relationships within the Orthurethra and Lymnaeoidea. (nottingham.ac.uk)
- The deep phylogenetic relationships at the base of the Stylommatophora are now clearly resolved. (nottingham.ac.uk)
- Systematic relationships within the Vibrionaceae (Bacteria: Gammaproteobacteria): steps toward a phylogenetic taxonomy. (bvsalud.org)
- Phylogenetic analysis and taxonomy of the Tropidurus group of lizards (Iguania, Tropiduridae). (amnh.org)
- Phylogenetic analysis and taxonomy of the poecilioid fishes (Teleostei: Cyprinodontiformes). (pfeil-verlag.de)
- Phylogenetic Analysis and Paleontology Columbia University Press, New York. (berkeley.edu)
- An additional five isolates appeared to be morphologically distinct, and this was supported by DNA sequence data and phylogenetic analysis. (lu.se)
- NCBI Taxonomy: a comprehensive update on curation, resources and tools. (nih.gov)
- In addition to being tested with the corpus of 5,014 type strain sequences from Bergey's outline, the RDP Classifier was tested with a corpus of 23,095 rRNA sequences as assigned by the NCBI into their alternative higher-order taxonomy. (asm.org)
- Tropical old world cyprinodonts, reflections on the taxonomy of tropical old world cyprinodonts, with remarks on their biology and distribution. (pfeil-verlag.de)
- Tinbergen proposed a taxonomy of ontogenetic and phylogenetic levels of explanation, provided empirical evidence for multiple ethological concepts, and developed the idea of using comparative methods in behavior to study evolution. (bvsalud.org)
- Phylogenetic affiliations of mesopelagic acantharia and acantharian-like environmental 18S rRNA genes off the southern California coast. (mbl.edu)
- In chapter 3, four standard markers: almost the full-length large subunit (LSU) rRNA gene (also incorporating part of the 5.8S gene), almost the full-length small subunit (SSU) rRNA gene, part of the histone three (H3) gene and the 1st and 2nd codon positions of the CO1 gene were used with the aim of resolving the basal divisions within the Stylommatophora and evaluating the phylogenetic utility of these markers. (nottingham.ac.uk)
- Starting in the mid-1980s, Carl Woese revolutionized the field of microbiology with his rRNA-based phylogenetic comparisons delineating the three main branches of life ( 28 ). (asm.org)
- In addition, IGS sequencing (e.g., sequencing of intergenic regions between the 16S and 23S rRNA genes) has been used to taxonomy studies, while partial sequencing of the gene gtfB , which encodes the enzyme glucosyltransferase B, has been used to investigate enzymatic activity and virulence 11-12 . (bvsalud.org)
- Listing all these organisms (i.e. providing a full circumscription) requires the full phylogenetic tree to be known. (wikipedia.org)
- Recently one step mutation matrices were introduced to model the impact of substitutions on arbitrary branches of a phylogenetic tree on an alignment site. (biomedcentral.com)
- For example, examining flaviviruses closely related to ZIKV, the phylogenetic framework indicates New World monkeys are the most likely candidates to be potential reservoirs for ZIKV. (springer.com)
- In some part, this was due to the lack of a consistent, higher-level bacterial classification structure (taxonomy). (asm.org)
- O'Keefe, F. R. and P. M. Sander (1999) Paleontological paradigms and inferences of phylogenetic pattern: a case study. (berkeley.edu)
- An anotomical and phylogenetic study of the osteology of the extant and extinct Artiodactylans (Mammalia) and relatives. (andrewisles.com)
- This list includes significant updates to the higher taxonomy of the Pyraloidea based on recent phylogenetic work. (coronetbooks.com)