Glycoside hydrolase familyCAZymesChitinasesProteinsEnzymesSpecificitiesProteinEncodesPolysaccharideExpressionResiduesSequenceComplex patternsActive siteRelationshipsFunctionFoundProcessGlycoside Hydrolase FamilyChitinaseHydrolysisFamilyGlycosylation patternsBreakdownGeneProcessesActivitiesPlantAuthorsSpecific
Glycoside hydrolase family1
- The presence of all epitopes can be differentially modulated in vitro using glycoside hydrolase family 43 and family 51 arabinofuranosidases. (megazyme.com)
CAZymes1
- In this study, we found 61 families of glycoside hydrolases (GH) (out of 182 CAZymes) from protein sequences deposited in the CAZy database-currently associated with more than 20,324 microbial genomes. (biomedcentral.com)
Chitinases2
- The glycoside hydrolase 18 family of chitinases includes eight human family members. (wikipedia.org)
- Chitinases are glycosyl hydrolases with the sizes ranging from 20 kDa to about 90 kDa (Bhattacharya and Gupta 2007 ) Chitinases are a huge and diverse group of enzymes that show differences in their molecular structure, substrate specificity, and catalytic mechanism. (springeropen.com)
Proteins2
- In general, most of the characterized proteins are glycosyl hydrolases (GH) structurally included in families GH32, 31, 13 or 18. (uam.es)
- Sequence analyses of unigenes revealed four potential groups: hydrolases, cell envelope associated proteins (CEAPs), candidate effectors and other proteins. (biomedcentral.com)
Enzymes3
- We have obtained numerous variants of enzymes that increase or alter the pattern of biosynthetic products. (uam.es)
- We intend to extend our study to hydrolases including in other structural families, to increase and modify the transferase/biosynthetic activity of the enzymes studied, to scale up to industrial level the enzyme production and the products generated, as well as to validate the biological activity of the molecules obtained. (uam.es)
- These enzymes are classified into glycoside hydrolase (GH) families and belong to some of the following families: GH5, GH8, GH10, GH11, GH30 and GH141, according to amino-acid sequence similarities (Verma 2021 ). (springeropen.com)
Specificities1
- Substrate specificities == [[Glycoside hydrolases]] of GH84 include ''β''-''N''-acetylglucosaminidases but members have often also been annotated as ''β''-''N''-acetylhyaluronidases. (cazypedia.org)
Protein2
- We describe a new computational method for the targeted discovery of functional modules of plant biomass-degrading protein families, based on their co-occurrence patterns across genomes and metagenome datasets, and the strength of association of these modules with the genomes of known degraders. (biomedcentral.com)
- Functional modules of protein families that are involved in different aspects of plant cell wall degradation can be inferred from co-occurrence patterns across (meta-)genomes with a probabilistic topic model. (biomedcentral.com)
Encodes2
- This gene encodes a glycoprotein member of the glycosyl hydrolase 18 family. (wikipedia.org)
- encodes a member of glycosyl hydrolase family 36. (or.jp)
Polysaccharide1
Expression3
- Its pattern of expression is associated with pathogenic processes related to inflammation, extracellular tissue remodeling, fibrosis and solid carcinomas and asthma. (wikipedia.org)
- The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. (or.jp)
- The authors of this research discuss the phenomenon of lack of expression of Hox gene during the early development of the phoronid Phoronopsis harmeri which indicates that the larval body develops without positional information from the Hox patterning system. (biomedcentral.com)
Residues1
- The diverse ionization behaviors of the histidine residues are discussed in terms of their structural and functional roles in this model glycoside hydrolase. (ubc.ca)
Sequence1
- A classification of glycosyl hydrolases based on amino acid sequence similarities. (expasy.org)
Complex patterns3
- Immunofluorescence microscopy indicates that the antibodies can be used to detect epitopes in cell walls, and that the four antibodies reveal complex patterns of epitope occurrence that vary between organs and species, and relate both to the probable processing of arabinan structural elements and the differing mechanical properties of cell walls. (megazyme.com)
- We aimed to investigate how simplifying the model and reducing entropy can affect the capture of complex patterns in the susceptibility maps. (preprints.org)
- However, we also observed that this reduction in complexity comes at the cost of losing important complex patterns in the produced landslide susceptibility maps. (preprints.org)
Active site1
- We have characterized by NMR spectroscopy the three active site (His80, His85, and His205) and two non-active site (His107 and His114) histidines in the 34 kDa catalytic domain of Cellulomonas fimi xylanase Cex in its apo, noncovalently aza-sugar-inhibited, and trapped glycosyl-enzyme intermediate states. (ubc.ca)
Relationships2
- By simplifying the model and reducing entropy, certain intricate relationships and uncertain patterns may be overlooked, resulting in a loss of information and potentially compromising the accuracy of the susceptibility maps. (preprints.org)
- KNN, known for its capability to capture local patterns and spatial relationships, was found to be sensitive to the choice of distance metric. (preprints.org)
Function1
- One such example is shown for the hydrolysis of glycosyl function that is instituted in various structures [6]. (crimsonpublishers.com)
Found1
- About 70% of the adult world population is lactose-intolerant, due to low levels of intestinal lactase, also called lactase-phlorizin hydrolase (LPH), a β-D-galactosidase found in the apical surface of the intestinal microvilli. (researchgate.net)
Process1
- The focus of the journal is on research that promotes understanding of the pattern and process of morphological evolution. (biomedcentral.com)
Glycoside Hydrolase Family1
- C-type lysozymes are closely related to α-lactalbumin in sequence and structure, making them part of the same glycoside hydrolase family 22 . (cloudfront.net)
Chitinase2
- We first identified a gene from B. thuringiensis YBT-9602 that encodes a chitinase (Chi9602) belonging to glycosyl hydrolase family 18 with conserved substrate-binding and substrate-catalytic motifs. (ijbs.com)
- Chitinase belongs to the glycosyl hydrolase family. (medchemexpress.com)
Hydrolysis1
- One such example is shown for the hydrolysis of glycosyl function that is instituted in various structures [6]. (crimsonpublishers.com)
Family5
- The glycoside hydrolase 18 family of chitinases includes eight human family members. (wikipedia.org)
- In this study, we investigated the expression of the gene encoding β-galactosidase (Glb)-1-like protein 3 (Glb1l3), a member of the glycosyl hydrolase 35 family, during retinal degeneration in the retinal pigment epithelium (RPE)-specific 65-kDa protein knockout ( Rpe65 −/− ) mouse model of Leber congenital amaurosis (LCA). (molvis.org)
- Chitinases (E.C.3.2.1.14) comprise a family of extracellular cell-wall hydrolases that hydrolyze the β-1,4-glycosidic bond of chitin to form the monomer N -acetyl-D-glucosamine. (ijbs.com)
- Cellulases of glycosyl hydrolase (GH) family 5 share a (β/α) 8 TIM-barrel fold structure with eight βα loops surrounding the catalytic pocket. (biomedcentral.com)
- The genes that exhibited significant enhanced expression in ABR17 transgenic plants also included genes for pro line rich protein family, xyloglucon endotransglyc osylase, glycosyl hydrolase, phytosulfokine precursor 2, No Apical Meristem protein family and glutaredoxins. (statpathway.com)
Glycosylation patterns2
- All gel-forming mucins share several features, such as specific domain structures, glycosylation patterns and biosynthetic pathways that differ from those of the membrane-bound mucins. (eurekaselect.com)
- Glycopeptides are enriched without degradation to preserve the glycosylation patterns and structures. (ludger.com)
Breakdown1
- At a higher temperature the RDS is formation of glycosyl enzyme intermediate and at a lower temperature the breakdown of that intermediate. (cloudfront.net)
Gene1
- Pollination inaugurates global changes in gene expression pattern that leads to sepal and petal abscission [ 1 ]. (biomedcentral.com)
Processes1
- Its pattern of expression is associated with pathogenic processes related to inflammation, extracellular tissue remodeling, fibrosis and solid carcinomas and asthma. (wikipedia.org)
Activities3
- Glycosylation appears to be a self-protection mechanism based on the activities of a glycosyltransferase and secreted glycosyl hydrolase encoded in the BGC. (nih.gov)
- Thermoascus aurantiacus and Thielavia terrestris were cultivated on various biomass substrates and culture supernatants assayed for glycoside hydrolase activities. (biomedcentral.com)
- Supernatants from both cultures possessed comparable glycoside hydrolase activities when incubated with artificial biomass substrates. (biomedcentral.com)
Plant1
- Recent advancements in the understanding of auxin biosynthesis, transport, and metabolism established that concentration gradient is a driving force for organogenesis and patterning, designating auxin as a plant morphogen [ 15 ]. (biomedcentral.com)
Authors1
- The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. (or.jp)
Specific1
- With the assistance of organ-specific expression pattern analysis, 3 unigenes encoding cytochrome P450s and 6 unigenes encoding glycosyltransferases were selected as the candidates most likely to be involved in glycyrrhizin biosynthesis. (biomedcentral.com)