• The identifica- capsulatum , Blastomyces dermatitidis , Coccidioides immitis , tion of these isolates as marine mammal strains was based on and Paracoccidioides brasiliensis were negative. (cdc.gov)
  • Biochemical, molecular, and virulence characteristics of select Mycobacterium marinum isolates in hybrid striped bass Morone chrysops x M. saxatilis and zebrafish Danio rerio. (oregonstate.edu)
  • A panel of 15 Mycobacterium marinum isolates was characterized by biochemical tests, sequencing the ribosomal DNA intergenic spacer (ITS) region and the heat shock protein 65 gene (hsp65) and pulsed-field gel electrophoresis (PFGE). (oregonstate.edu)
  • Isolates possessing a guanine residue at this position (G strains) were unable to hydrolyze Tween 80, while isolates that contained an adenine residue at this position (A strains) were positive for Tween 80 hydrolysis. (oregonstate.edu)
  • Eight isolates (4 G and 4 A strains) were further characterized for virulence by experimental infection of hybrid striped bass (HSB) Morone chrysops x M. saxatilis and zebrafish Danio rerio. (oregonstate.edu)
  • When these same isolates were tested in zebrafish, 6 of the 8 strains caused 100% cumulative mortality, with 2 of the A strains being the most pathogenic. (oregonstate.edu)
  • In this study, we explored both hypotheses elucidating the pan-genome of Vibrionaceae isolates after a perturbation event in the endangered oasis of Cuatro Ciénegas Basin (CCB), Mexico, and looking for signals of adaptation to the environments in their genomes.Results We obtained 42 genomes of Vibrionaceae distributed in six lineages, two of them did not showed any close reference strain in databases. (researchsquare.com)
  • To this end, 3-hydroxy coumarin (3HC), a compound identified from the cell-free culture supernatant of the marine bacterium Brevundimonas abyssalis, was found to exhibit anti-biofilm and anti-hyphal activity against both reference and clinical isolates of C. albicans. (solamonrenewableenergy.com)
  • The multiplex PCR course of was validated with a whole of 243 E. faecalis strains that included 02 ATCC strains, 109 isolates from marine samples (sediment, water and sea meals), 22 isolates from cattle fodder, 79 isolates modern water samples and 31isolates from nosocomial samples. (pharmas-eu.org)
  • A total of 107 Actinomycetes were isolated and screening was done using modified agar disc diffusion method of which only 39 (36.4%) showed antimicrobial activity against five of the six test isolates that included reference strains Staphylococcus aureus (ATCC 25923), Escherichia coli (ATCC 25922) and Candida albicans (ATCC 90028) and three clinical strains Trichophyton mentagrophyte, Microsporum gypseum and Methicillin Resistant Staphylococcus aureus. (scirp.org)
  • We developed a comprehensive experimental setup and demonstrated the applicability of this VBNC-MIC assay for testing the tolerance of 12 strains of 4 important bacterial species ( Escherichia coli , Bacillus cereus , Pseudomonas aeruginosa , and Listeria monocytogenes ) in the VBNC state to eight important antimicrobials including four different antibiotics. (frontiersin.org)
  • This enzyme has only been found in marine bacteria. (wikipedia.org)
  • The study intends to explore the therapeutic potential of naturally produced compounds by competitive marine bacteria residing in marine biofilms against C. albicans biofilm. (solamonrenewableenergy.com)
  • The exploitation of natural products, such as compounds derived from marine bacteria, offers new prospects for the development of novel drug entities. (solamonrenewableenergy.com)
  • 2020 ). Utilising marine bacteria to accelerate the decomposition of seaweed waste has attracted great interests, as the complex structure of seaweed cell wall is not readily accessible to general microorganisms. (springeropen.com)
  • One hundred and eleven antibiotic governing the application of antibacterial agents for agricul- resistant Gram-negative bacteria strains were recovered tural purpose in developing countries are generally absent from twenty-two Dicentrarchus labrax samples captured or unheeded (Alderman and Hastings, 1998). (sagepub.com)
  • unchecked use could also lead to a wide variety of antibiot- Total bacteria counts were made by the spread Plate ic resistant bacterial strains. (sagepub.com)
  • ANIs between strain CAIM 285T and the five V. penaeicida strains were >95â %, which indicated that these strains belong to the same species. (bvsalud.org)
  • The average nucleotide identity and digital DNA-DNA hybridization values between strain 188UL20-2T and its closest related strain were 71.3 and 16.4%, indicating that 188UL20-2T represents a novel species of the genus Vibrio. (bvsalud.org)
  • Physiological and biochemical characteristics indicated that strain 188UL20-2T represents a novel species of the genus Vibrio, for which the name Vibrio ulleungensis sp. (bvsalud.org)
  • Here, by leveraging species-specific Type IIB restriction endonuclease digestion sites as reference instead of universal markers or whole microbial genomes, we present a metagenomic profiler, MAP2B ( M et A genomic P rofiler based on type IIB restriction sites), to resolve those issues. (nature.com)
  • Notably, whole metagenome sequencing (WMS) can capture all microorganisms at the species (or even strain) resolution, hence having greater potential for clinical practice than amplicon sequencing. (nature.com)
  • The distinct phylogenetic position and phenotypic traits of strain JBKA-6 T distinguish it from all other described species of the phylum ' Bacteroidetes ', and therefore it was concluded that strain JBKA-6 T represents a new member of the phylum ' Bacteroidetes ', and the name Ichthyobacterium seriolicida gen. nov., sp. (microbiologyresearch.org)
  • We used a dataset of metabolic characteristics from a de-identified set of known bacterial strains that the Special Bacteriology Reference Laboratory (SBRL) of the Centers for Disease Control and Prevention (CDC) has curated for use in species identification. (cdc.gov)
  • The re-annotation also utilises sequence data from additional Campylobacter strains and species not available during the original annotation. (omictools.com)
  • Marinobacter nauticus strain SP.17 is a bacterial strain that was isolated from polluted seawater and sediments near a petroleum refinery in Gulf of Fos, Mediterranean coast, France. (atcc.org)
  • The marine bacterial strain Microbulbifer sp. (springeropen.com)
  • The marine bacterium Pseudoalteromonas carrageenovora (also known as Alteromonas carrageenovora) strain ATCC 43555, which was isolated from sea water in Nova Scotia, and the deep-sea bacterial isolate Pseudoalteromonas sp. (wikipedia.org)
  • Characterisation of marine bacterium Microbulbifer sp. (springeropen.com)
  • Studies on a Gram-positive hydrogen bacterium, Nocardia opaca strain lb. (microbiologyresearch.org)
  • These strains have apparent differences in several phenotypic characteristics ( Yang and Yang, 2017 ). (frontiersin.org)
  • This study attempted to provide some phenotypic characteristics of strain ALW1 and to have an insight into its physiological and biochemical parameters. (springeropen.com)
  • Ten peaks were obtained in the C. glutamicum ATCC 14067 genome including two new peaks related to three operons (RS_01910-RS_01915, RS_15995, and RS_16000). (frontiersin.org)
  • The genome of strain TUMSAT-OK2 tended to encode more prophage regions than the other strains, whereas the genome of strain IFO 15640T had the highest number of regions encoding genomic islands. (bvsalud.org)
  • For comparative genome analysis, we used V. penaeicida (strain CAIM 285T) as a reference strain. (bvsalud.org)
  • The antibiotic activity of the essential oil was assessed on 05 strains of Bacillus ( B. amyloliquefaciens FZB42, B. amyloliquefaciens S499, B. subtilis ATCC 21332, B. licheniformis ATCC 14580, B. pumilus ), using the method of diffusion in a solid medium. (fortunejournals.com)
  • The essential oil of Origanum vulgare proved to be endowed with bactericidal properties against Bacillus strains. (fortunejournals.com)
  • Based on alignment of the 16 S rRNA sequence with other reference relatives, ALW1 showed the closest relationship with Microbulbifer aggregans CCB-MM1 T . The cell morphology and some basic physiological and biochemical parameters of ALW1 cells were characterised. (springeropen.com)
  • ATCC 1015 / CBS 113.46 / FGSC A1144 / LSH / Ac4 / NCTC 3858a / NRRL 328 / USDA 3528.7) Aspergillus kawachii (strain NBRC 4308) (White koji mold) (Aspergillu awamori var. (inrae.fr)
  • aspna-g3xsl3 Aspergillus niger (strain ATCC 1015 / CBS 113.46 / FGSC A1144 / LSHB Ac4 / NCTC 3858a / NRRL 328 / USDA 3528.7). (inrae.fr)
  • aspna-g3y4g9 Aspergillus niger (strain ATCC 1015 / CBS 113.46 / FGSC A1144 / LSH Ac4 / NCTC 3858a / NRRL 328 / USDA 3528.7) Uncharacterized protein , aspng-pepf Aspergillus niger pepF gene , aspsa-peps Aspergillus saitoi and Aspergillus niger carboxypeptidase , aspnc-kex1 Aspergillus niger (strain CBS 513.88 / FGSC A1513). (inrae.fr)
  • But there are specific regulatory elements in other strains that give those strains different metabolic capabilities. (frontiersin.org)
  • Currently, the use of bacterial probiotic strains and their metabolic products is considered a new approach for the control and prevention of various infectious diseases [ 12 ] . (encyclopedia.pub)
  • Because many strains of the following gram-positive microorganisms have been shown to be resistant to tetracyclines, culture and susceptibility testing are especially recommended. (nih.gov)
  • strain X0973 is a Gram-positive, weakly acid-fast, aerobic actinomycete obtained from a human abscess with Gordonia araii NBRC 100433(T) as its closest phylogenetic neighbor. (cdc.gov)
  • Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC. (expasy.org)
  • strain W8901 is a Gram-positive, aerobic, mycolic acid-containing coccobacillus obtained from a patient with acute lymphocytic leukemia. (cdc.gov)
  • Production of Lactobacilli Proteinases for the Manufacture of Bioactive Peptides: Part I - Upstream Processes, in Kim, S. (ed), Marine Proteins and Peptides: Biological Activities and Applications, pp. 207-229. (edu.au)
  • There has been much research on AmtR structure, functions, and regulons in the type strain C. glutamicum ATCC 13032, but little research in other C. glutamicum strains. (frontiersin.org)
  • In the present investigation, the sugar industry byproduct, molasses has been tested for its suitability for biosurfactant production using Pseudomonas aeruginosa strain. (scialert.net)
  • all G strains had identical AseI restriction enzyme-cutting patterns while the A strains exhibited a variety of cutting patterns. (oregonstate.edu)
  • Based on these pathologic findings and concern that the patient infections with marine mammal-associated Brucella spp. (cdc.gov)
  • We present the first report of community-acquired human infection with marine mammal-associated Brucella spp. (cdc.gov)
  • Moreover, the amount of seaweed waste generated from the manufacturing process has increased, and the drifting seaweed debris from seaweed farming can cause marine eutrophication (Alemañ et al. (springeropen.com)
  • This strain has applications in the degradation of eicosane and hydrocarbons. (atcc.org)
  • Genomic information of strain ALW1 is useful for analysing the polysaccharides degradation process. (springeropen.com)
  • 2021. Differential roles of three different upper pathway meta ring cleavage product hydrolases in the degradation of dibenzo-p-dioxin and dibenzofuran by Sphingomonas wittichii strain RW1. (nih.gov)
  • Here, we characterised physiological and proteomic changes between a low-starch C. reinhardtii strain and the snow alga Chlamydomonas nivalis, to reveal insights into their contrasting responses to salinity stress. (biomedcentral.com)
  • In comparison, a cre T deletion mutant strain is able to grow on creatinine but loses the ability to grow on creatine. (frontiersin.org)
  • This attenuation was amplified in a double mutant strain. (omictools.com)
  • therefore, it is essential to evaluate different available strains for their biosurfactant potential and their characterization. (scialert.net)
  • The RS_01910, RS_01915, RS_15995, and RS_16000 are not present in the type strain C. glutamicum ATCC 13032. (frontiersin.org)
  • The research on transcription factors in C. glutamicum was mainly focused on the type strain C. glutamicum ATCC 13032. (frontiersin.org)
  • The type strain is 188UL20-2T (=KACC 22258T=LMG 32202T). (bvsalud.org)
  • The type strain of A. autotrophicum , strain SA 32, was deposited with the Deutsche Sammlung von Mikroorganismen under the number DSM 732. (microbiologyresearch.org)
  • The effect of 100 mM NaCl salt stress on lipid content in wild-type CC124 C. reinhardtii has revealed a 50-fold increase from approximately 0.1 µg TAG 10 -6 cells to approximately 5 µg TAG 10 -6 cells [ 9 ], to reach similar levels to those found for this strain under nitrogen deprivation. (biomedcentral.com)
  • Brevetoxins are a suite of marine neurotoxins that activate voltage-gated sodium channels (VGSCs) in cell membranes, with toxicity occurring from persistent activation of the channel at high doses. (mdpi.com)
  • EV-A71 strains could also be categorised into seven genogroups, A-H, on the premise of the VP1 capsid protein gene sequence. (pharmas-eu.org)
  • The genomic sequence analysis of strain ALW1 was chipped in to enrich our understanding of the genetic loci contributing to its capability of degrading diverse polysaccharides derived from seaweed cell wall. (springeropen.com)
  • Unless necessary, ATCC recommends that these cultures be stored in the vapor phase of liquid nitrogen rather than submersed in liquid nitrogen. (atcc.org)
  • Real-time quantitative PCR (RT-qPCR) analysis and sfGFP (superfolder green fluorescent protein) analysis reveal that AmtR directly and negatively regulates the transcription and expression of crn A, cre T, csh A, and hyu B. A growth test shows that C. glutamicum ATCC 14067 can use creatine or creatinine as a sole nitrogen source. (frontiersin.org)
  • The spread of bacterial strains that cause severe infectious diseases but are now resistant to known antibiotics necessitates the search for and development of new approaches to combat these diseases [ 1 ] . (encyclopedia.pub)
  • In conclusion, this study showed that marine biofilms are a hidden source of diverse therapeutic drugs, and 3HC could be a potent drug to treat C. albicans infections. (solamonrenewableenergy.com)
  • In natural environmental conditions, marine biofilms consist of multispecies bacterial communities in close proximity, with large metabolite and protein exchange, as well as coordinated lifestyles. (solamonrenewableenergy.com)
  • Compounds originating from naturally competitive environments, such as marine biofilms, are more likely to possess greater potential to inhibit the virulence of other organisms. (solamonrenewableenergy.com)
  • These strains were also the most closely related to each other in a phylogenetic analysis. (bvsalud.org)
  • Such bottleneck faced by traditional metagenomic profilers is due to their reliance on universal single-copy markers or whole microbial genomes as references. (nature.com)
  • Orthology cluster analysis showed that strains TUMSAT-OK1 and TUMSAT-OK2 had the greatest number of shared gene clusters, followed by strains CAIM 285T and IFO 15640T. (bvsalud.org)
  • The envelope glycoprotein E2 of C-strain CSFV was successfully expressed in insect cells by using Bac-to-Bac® Baculovirus Expression System. (biomedcentral.com)
  • The five strains showed high sensitivity towards the essential oil with inhibition diameters ranging from 21.5 mm to 41 mm and a MIC of 0.4 mg/ml. (fortunejournals.com)
  • However, computational methods (e.g., reference-based metagenomic profilers, which attempt to efficiently decode WMS reads without assembly) were found to have a more significant effect size on the false-positive identification issue in WMS data. (nature.com)
  • The cost can be reduced by selection of efficient strains, optimizing medium composition or by using alternative inexpensive substrates. (scialert.net)
  • A chemically defined medium for Aquaspirillum aquaticum ATCC 11330. (microbiologyresearch.org)
  • This co-evolution of commensal/mutualistic microbes within marine vertebrate hosts may have had a strong contribution to their nutritional adaptation to specific diets [ 10 ]. (springer.com)
  • Marine Algae-Derived Bioactive Compounds: A New Wave of Nanodrugs? (mdpi.com)
  • Recently, Brucella has been found to cause infections in marine mammals (7,8). (cdc.gov)
  • We further test the performance of MAP2B using real WMS data from an ATCC mock community, confirming its superior precision against sequencing depth. (nature.com)
  • Integration of data from additional sources that can provide context about the strain can address this challenge. (cdc.gov)
  • In this study, chromatin immunoprecipitation and massively parallel DNA sequencing (ChIP-seq) was performed to identify the AmtR regulon in C. glutamicum ATCC 14067. (frontiersin.org)
  • The study identified an actinomycetes strain with antagonist activity that could be used for biocontrol of plant pathogenic fungi. (wu.ac.th)
  • In this study, we presented a neutralizing monoclonal antibody (mAb) based competitive enzyme-linked immunosorbent assay (cELISA) with the emphasis on the replacement of VNT for C-strain post-vaccination monitoring. (biomedcentral.com)
  • aspnc-a2r1p3 Aspergillus niger (strain CBS 513.88 / FGSC A1513) Catalytic activity: 3-Oxoadipate enol-lactone + H2O = 3-Oxoadipate , aspnc-a2r6g3 Aspergillus niger (strain CBS 513.88 / FGSC A1513) Similarity to alkyl salicylate esterase salE - Acinetobacter sp. (inrae.fr)
  • One monoclonal antibody (6B211) which has potent neutralizing activity against C-strain was generated. (biomedcentral.com)
  • ATCC highly recommends that appropriate personal protective equipment is always used when handling vials. (atcc.org)
  • Continued improvement of proteinase yields depends on a number of factors: identification of highly proteolytic strains, improvement of proteinase yields via optimisation of mediacomponent and process parameters and efficient product recovery. (edu.au)