• As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. (wikipedia.org)
  • Genes contributing to the similarity include ribosomal protein (RP) genes as well as genes involved in transcription, translation and cell division. (karger.com)
  • Bortoluzzi S, Alessi FD, Romualdi C, Danieli GA: Differential expression of genes coding for ribosomal proteins in different human tissues. (karger.com)
  • Here, we provide the first cytogenetic information on the species based on both conventional karyotyping and chromosomal mapping of 45S and 5S ribosomal genes through fluorescence in situ hybridization (FISH). (scielo.br)
  • Both classes of ribosomal genes appeared to be spread out to multiple chromosomal locations, i.e. the 45S and 5S rDNA clusters were detected on six and seven chromosome pairs, respectively. (scielo.br)
  • A linked chromosomal organization of the major and minor ribosomal genes classes has been visualized in most of the rDNAs chromosomal locations. (scielo.br)
  • Click gene/probe ID to show a list of genes that are homologous to the gene. (or.jp)
  • Most yeast ribosomal protein genes are duplicated and their characterization has led to hypotheses regarding the existence of specialized ribosomes with different subunit composition or specifically-tailored functions. (prolekarniky.cz)
  • In yeast, ribosomal protein genes are generally duplicated and evidence has emerged that paralogs might have specific roles. (prolekarniky.cz)
  • Here, a large-scale deletion library of ribosomal protein (RP) genes was constructed for heterologous protein expression in Pichia pastoris , and 59% (16/27) RP deletants have significantly increased heterologous protein yield. (biomedcentral.com)
  • This is due to the delay of 60S subunit assembly by deleting non-essential ribosomal protein genes or 60S subunit processing factors, thus globally decreased the translation elongation speed and improved the co-translational folding, without perturbing the relative transcription level and translation initiation. (biomedcentral.com)
  • Homologous ribosomal protein genes on the human X and Y chromosomes: escape from X inactivation and possible implications for Turner syndrome. (addexbio.com)
  • In contrast, ribosomal-related genes were downregulated in SBPH after transfer, but these genes were upregulated in BPH under the same conditions. (biomedcentral.com)
  • Plant mitochondrial genomes contain genes for their own rRNA subunits as well as for some of the ribosomal proteins and tRNAs required for translation (Figure 1 ), but many necessary ribosomal protein and tRNA genes are located in the nuclear genome, so their gene products must be imported into the mitochondrion [ 15 ]. (biomedcentral.com)
  • BACKGROUND PCR amplification of extremely homologous genes from complicated DNA mixtures is understood to generate a major proportion of chimeric sequences. (genpcr.com)
  • Ribosomal RNA genes are used for microbial species detection and identification in pure environments, and present assessments of microbial range are based mostly on these sequences. (genpcr.com)
  • The Landscape of Realized Homologous Recombination in Pathogenic Bacteria. (ox.ac.uk)
  • Here, we examined landscapes of realized homologous recombination of 500 genomes from ten bacterial species and found all species have "hot" regions with elevated rates relative to the genome average. (ox.ac.uk)
  • For example, ribosomal proteins showed low recombination in all of the species. (ox.ac.uk)
  • Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. (embl-heidelberg.de)
  • The protein encoded by this gene is a key component of the mismatch repair system that functions to correct DNA mismatches and small insertions and deletions that can occur during DNA replication and homologous recombination. (nih.gov)
  • Divergence in one region of 18S rRNA appears to be the result of a gene conversion event, in which recombination with a homologous gene of chloroplast origin led to the complete replacement of a helix in this ribosomal RNA. (biomedcentral.com)
  • It is thought to initiate recombination events or process recombination structures that occur during the replication of the tandem repeats of the ribosomal DNA (rDNA) locus. (crcm-marseille.fr)
  • Here, we present evidence that fission yeast Slx1-Slx4 initiates homologous recombination events in the rDNA repeats that are processed by a mechanism that requires Rad22 (Rad52 homologue) but not Rhp51 (Rad51 homologue). (crcm-marseille.fr)
  • These data suggest that Slx1-Slx4 cleaves paused replication forks in the rDNA, leading to Rad22-dependent homologous recombination that is used to maintain rDNA copy number. (crcm-marseille.fr)
  • The NAD-dependent histone deacetylase Sir2 controls ribosomal DNA (rDNA) silencing by inhibiting recombination and RNA polymerase II-catalyzed transcription in the rDNA of Saccharomyces cerevisiae Sir2 is recruited to nontranscribed spacer 1 (NTS1) of the rDNA array by interaction between the RENT ( RE: gulation of N: ucleolar S: ilencing and T: elophase exit) complex and the replication terminator protein Fob1. (omicsdi.org)
  • Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila. (cdc.gov)
  • The protein belongs to the S11P family of ribosomal proteins. (wikipedia.org)
  • Ribosomal protein S4 is one of the proteins from the small ribosomal subunit. (expasy.org)
  • Yeast ribosomal proteins: XII. (expasy.org)
  • NAM9 nuclear suppressor of mitochondrial ochre mutations in Saccharomyces cerevisiae codes for a protein homologous to S4 ribosomal proteins from chloroplasts, bacteria, and eucaryotes. (expasy.org)
  • Unlike yeast, most mammalian ribosomal proteins are thought to be encoded by a single gene copy, raising the possibility that heterogenous populations of ribosomes are unique to yeast. (prolekarniky.cz)
  • Ribosome synthesis is a highly controlled process, whereby three distinct RNA polymerases are synchronously coordinated to produce equimolar amounts of four rRNAs and 79 mammalian ribosomal proteins (RPs) [1] - [4] . (prolekarniky.cz)
  • As observed more broadly in angiosperms, ribosomal proteins have been especially prone to gene loss in the S. latifolia lineage. (biomedcentral.com)
  • This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. (umbc.edu)
  • Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. (umbc.edu)
  • Comparison of the deduced amino acid sequences of the giant panda with those of these other species revealed that the RPS14 of giant panda is highly homologous with those of B. taurus, R. norvegicus and D. rerio (85.99, 99.34 and 99.34%, respectively), and is 100% identical with the others. (geneticsmr.com)
  • Transcriptome sequencing revealed the presence of transcripts for Apolipophorin III identical to the published house cricket sequence and highly homologous for another cricket, Gryllus Bimaculatus. (emerging-researchers.org)
  • The typical bacterial scenario seemed to be a two-component sHsps system of two homologous sHsps, such as the Escherichia coli sHsps IbpA and IbpB. (cipsm.de)
  • 40S ribosomal protein S14 is a protein that in humans is encoded by the RPS14 gene. (wikipedia.org)
  • This gene encodes a ribosomal protein that is a component of the 40S subunit. (wikipedia.org)
  • In serotype 4b, gtcA appears to be the first member of a bicistronic operon which includes a gene with homology to Bacillus subtilis rpmE , encoding ribosomal protein L31. (asm.org)
  • The three define an ancient gene family and their peptides are structurally and functionally homologous. (cabd.es)
  • RPS14 is a component of the 40S ribosomal subunit encoded by the RPS14 gene and is required for its maturation. (geneticsmr.com)
  • 25 years of serving the community with ribosomal RNA gene reference databases and tools. (cdc.gov)
  • Within L. monocytogenes , sequences homologous to gtcA were found in all serogroup 4 isolates but not in strains of any other serotypes. (asm.org)
  • Genetic relationship of a newly found out teosinte from Nicaragua, with waterlogging tolerance, was decided based on randomly amplified polymorphic DNA (RAPD) markers and the internal transcribed spacer (ITS) sequences of nuclear ribosomal DNA using 14 accessions from species. (woofahs.com)
  • ITS sequences rapidly evolve, but size and functional constraints permit evaluation of homologous sequences between taxa in subgenus or genus [14]. (woofahs.com)
  • In this survey, we present the initial molecular marker analyses for the hereditary romantic relationship of in types by using arbitrarily amplified polymorphic DNA (RAPD) markers and the inner transcribed spacer (It is) sequences of nuclear ribosomal DNA (nrDNA), that have both been utilized AZD1480 to solve romantic relationships among carefully related taxa [15], and a sample of 14 maize and teosinte varieties. (woofahs.com)
  • This not been done thoroughly at a genomic scale in any metazoan species, and we are using Poly-Ribo-Seq, our improvement of Ribosomal profiling that allows genome-wide identification of translated sequences, and proteomics. (cabd.es)
  • A rice Oryza sativa L. cDNA encodes a protein sequence homologous to the eukaryotic ribosomal 5S RNA-binding protein , 1993, Plant Mol Biol. (github.io)
  • In eukaryotic cells, ribosomal DNA (rDNA) forms the basis of the nucleolus. (omicsdi.org)
  • Also, the analyses indicate that chromosomal rearrangements occurred independently within the distinct lineages of S . marmoratus complex, which resulted in the appearance of distinct karyotypic variants in a non-linear fashion related to diploid numbers and in the appearance of similar non-homologous chromosomes. (scielo.br)
  • In addition, interventions leading to reduced translation, such as dietary restriction and reduced 60S ribosomal protein expression, elicits lifespan extension in yeast, worms and files [10] - [13] . (prolekarniky.cz)
  • We developed a novel technique to profile polysomal fractions (Poly-Ribo-Seq): RNAs bound by multiple ribosomes (and thus actively translated) are purified and the exact position of the translating ribosomes determined by ribosomal profiling. (cabd.es)
  • In response to immune induction, uORF-inhibition is alleviated by three Ded1p/DDX3X-homologous RNA helicases which unwind the RNA structures, allowing ribosomes to bypass the inhibitory uORFs and upregulate defence protein production. (biorxiv.org)
  • In Escherichia coli, S4 is known to bind directly to 16S ribosomal RNA. (expasy.org)
  • Orthologous to human MRPS25 (mitochondrial ribosomal protein S25). (zfin.org)
  • Nsi1 plays a significant role in the silencing of ribosomal DNA in Saccharomyces cerevisiae. (omicsdi.org)
  • We are one of the few groups worldwide that can apply functional genomics to the study of smORFs, due to our expertise in functional genetic analysis, bioinformatics, and ribosomal profiling. (cabd.es)
  • Hemotin encodes an 88aa peptide that we have shown to be translated by proteomics and Poly-Ribo-Seq, and identified it as homologous to stannin, a human and vertebrate protein with alpha-helix regions and uncertain function but involved in neurotoxicity. (cabd.es)
  • P90 ribosomal S6 kinases: A bona fide target for novel targeted anticancer therapies? (lu.se)
  • We have successfully improved ribosomal profiling to detect, genome-wide, productive smORF translation. (cabd.es)
  • Topology prediction shows that there are two N-glycosylation sites, three protein kinase C phosphorylation sites, two casein kinase II phosphorylation sites, four N-myristoylation sites, two amidation sites, and one ribosomal protein S11 signature in the RPS14 protein of the giant panda. (geneticsmr.com)
  • We propose that ribosome specificity may exist in mammals, providing evidence that one ribosomal protein can influence composition of the ribosome by regulating its own paralog. (prolekarniky.cz)
  • It could be a ribosomal protein that acts as a suppressor by decreasing translation accuracy. (expasy.org)
  • Consistent with the hypothesis that either ribosomal protein can support translation, knockdown of Rpl22l1 impairs growth of cells lacking Rpl22 . (prolekarniky.cz)
  • The m 7 G-cap of the mRNA is recognized by the 43S translation preinitiation complex comprised of the 40S ribosomal subunit and the eIF2-GTP-Met-tRNAi ternary complex. (biorxiv.org)
  • Violin plots show distribution of expression levels for 60S ribosomal protein L13a (SMED30019903) in cells (dots) of each of the 12 neoblast clusters. (stowers.org)
  • Expression of 60S ribosomal protein L13a (SMED30019903) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells. (stowers.org)
  • Violin plots show distribution of expression levels for 60S ribosomal protein L13a (SMED30019903) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells. (stowers.org)
  • It defines homologous sites and putative evolution of site-specific variation [ 1 - 5 ]. (biomedcentral.com)
  • Preliminary analysis focused on ovary and DLM tissue suggests that apolipophorin and ribosomal RNA are expressed by each tissue. (emerging-researchers.org)
  • BI-D1870 is a specific inhibitor of the p90 RSK (ribosomal S6 kinase) isoforms in vitro and in vivo. (omicsdi.org)
  • In addition to their role in the ribosome, many RPs, including murine Rpl22, have been shown to have extra-ribosomal functions [16] - [18] . (prolekarniky.cz)