Loading...
  • allele
  • However, in the case of the Germans the Cw allele was not typed so it is undetermined whether the haplotype is of the 'Basque' variant or the ancestral 'Sardinian' type, In addition in Sardinia the A30 serotype has never been resolved by high resolution genetyping and therefore the A*3002 has not been confirmed. (wikipedia.org)
  • Determination of haplotypes can be done through molecular methods (Allele Specific PCR, Somatic cell hybrids). (wikipedia.org)
  • Mutation
  • 2016, March 1) Mutation and Haplotypes. (utah.edu)
  • A haplogroup is a group of similar haplotypes that share a common ancestor with a single-nucleotide polymorphism mutation . (wikipedia.org)
  • A perfect phylogeny model consists of a tree where each vertex corresponds to a haplotype and each edge corresponds to a mutation in one of the positions of the haplotype. (nih.gov)
  • analyses
  • In some regions, due to low diversity in the Y-STR gene (often used to study surname origin), haplotype convergence may confuse analyses, concluding unrelated individuals to be very closely related. (wikipedia.org)
  • Origin
  • the prevalence of African origin, and the similarity in the Panamanian and Colombian distribution of haplotypes. (biomedsearch.com)
  • Though there has been much debate of the origins of haplogroup M1 a recent 2007 study had concluded that M1 has West Asia origins not a Sub Saharan African origin Origin A 2003 Y chromosome study was performed by Lucotte on modern Egyptians, with haplotypes V, XI, and IV being most common. (wikipedia.org)
  • species
  • A comprehensive list of reported mitochrondrial DNA haplotypes for Oncorhynchus mykiss generated using the S-Phe/P2 primer set is presented as a resource for future investigations of this species. (usgs.gov)
  • A large number of S haplotypes have been identified, mainly in cultivated species of the Brassica and Raphanus genera, but recently also in wild Arabidopsis species. (genetics.org)
  • This is a simplistic description of the general mechanism of SI, which is more complicated, and in some species the S-haplotype contains more than two protein coding regions. (wikipedia.org)
  • There were no shared haplotypes between species. (wikipedia.org)
  • thus
  • Next Gen Sequencing can thus provide not only perfectly phased genome, but also a haplotype map which can be used to impute untested SNP's from nearby known ones. (snpedia.com)
  • Thus, haplotypes are shared mainly between very closely related individuals, as the genetic information in two related individuals will be much more similar than between unrelated individuals. (wikipedia.org)
  • ancestor
  • Clade here refers to a set of haplotypes sharing a common ancestor. (wikipedia.org)
  • Our results also show that a common set of S haplotypes was present in the ancestor of the Brassica and Arabidopsis genera, that only a small number of haplotypes survived in the Brassica lineage after its separation from Arabidopsis, and that diversification within the two Brassica dominance classes occurred after the split between the two lineages. (genetics.org)
  • common multigene haplotypes are generally the result of identity by descent from a common ancestor (share a recent common ancestor for that segment of the chromosome). (wikipedia.org)
  • increases
  • The parallel implementation on multi-core architectures allows for a relevant reduction of the execution time for haplotyping, while the provided results enjoy the same high accuracy as that provided by WHATSHAP, which increases with coverage. (inria.fr)
  • Blocks
  • Haplotype blocks may be as short as 2 kb or more than 150 kb, depending both on block definition and the spacing of LD cold spots, which tend to be shorter than blocks. (els.net)
  • Morton, Newton E(Dec 2007) Blocks of Limited Haplotype Diversity. (els.net)
  • Recently, Gusfield introduced the perfect phylogeny haplotyping problem, as an algorithmic implication of the no-recombination in long blocks observation, together with the standard population-genetic assumption of infinite sites. (umd.edu)