Genome s species. Medical search. Frequent questions

citation needed] Analysis of repeated sequences has been found useful in reconstructing species divergence timelines. (wikipedia.org)

In the context of conservation biology, genomic technologies such as the production of large-scale sequencing data sets via DNA sequencing can be used to highlight the relevant aspects of the biology of wildlife species for which management actions may be required. (wikipedia.org)
better source needed] Since whole-genome sequencing is generally very data-intensive, techniques for reduced representation genomic approaches are sometimes used for practical applications. (wikipedia.org)
We performed a genomic study on 48 cases of Enterobacter -caused bloodstream infection by using in silico DNA-DNA hybridization to identify precise species. (cdc.gov)
Because of the substantial reduction in cost of whole-genome sequencing for bacterial strains, we are entering the era of genomic microbiology ( 8 ). (cdc.gov)
We believe the same thing might have happened in many other species lineages and that is important given the possibility that it generated genomic conditions that helped the species survive mass extinctions. (sciencedaily.com)
Díez-del-Molino D, Sánchez-Barreiro F, Barnes I, Gilbert MTP, Dalén L. Quantifying temporal genomic erosion in endangered species. (crossref.org)
van der Valk T, Díez-Del-Molino D, Marques-Bonet T, Guschanski K, Dalén L. Historical genomes reveal the genomic consequences of recent population decline in eastern gorillas. (crossref.org)
Copy numbers of all three retrotransposon groups (Ty1-copia, Ty3-gypsy and LINE) in these species have been estimated by random genomic sequencing and Southern hybridisation analysis. (dundee.ac.uk)
Although genomic changes associated with these events has been studied at various levels but the genome size and GC content variation is less understood because of absence of sufficient genomic data. (scielo.br)
In this study the flow cytometry technique was used to uncover the genome size and GC contents of 46 Nicotiana species and we compared the genomic changes associated with the hybridization events along evolutionary time scale. (scielo.br)
Over 375 repetitive extragenic palindromic sequences unique to Pss B728a when compared with Pst DC3000 are widely distributed throughout the chromosome except in 14 genomic islands, which generally had lower GC content than the genome as a whole. (nih.gov)
The species in the genus Oryza, encompassing nine genome types and 23 species, are a rich genetic resource and may have applications in deeper genomic analyses aiming to understand the evolution of plant genomes. (edu.sa)
With the advancement of next-generation sequencing (NGS) technology, a flood of Oryza species reference genomes and genomic variation information has become available in recent years. (edu.sa)
This G. agassizii genome reference and annotation is the first such resource for any tortoise, and will serve as a foundation for future analysis of the genetic basis of adaptations to the desert environment, allow for investigation into genomic factors affecting tortoise health, disease and longevity, and serve as a valuable resource for additional studies in this species complex. (asu.edu)
This approach has been called " genomic epidemiology "-using pathogen genome sequences to detect emerging diseases, assess their potential virulence and resistance to antibiotics, and monitor their spread in populations. (cdc.gov)
What genomic studies are CDC public health scientists doing-and which genomes are they writing about? (cdc.gov)
Genomes are found at all three corners of the epidemiologic triangle: human or animal hosts are engaged in genomic contests with pathogens of all kinds, played out in an environment teeming with the genomes of other people, animals, plants, and microbes. (cdc.gov)

Our findings are exciting because as well as shining a light on sturgeon and paddlefish genome evolution, they provide a comparative snapshot of how our early vertebrate ancestors genome and duplicated genes evolved after these doubling events. (sciencedaily.com)
A previous study involving whole genome sequencing of the white shark suggested unique molecular evolution accounting for gigantism and the enhanced longevity of sharks including positive selection of dozens of protein-coding genes potentially involved in genome stability. (preprints.org)
Advances in transcriptome sequencing allow for simultaneous interrogation of differentially expressed genes from multiple species originating from a single RNA sample, termed dual or multi-species transcriptomics. (biomedcentral.com)
Conclusions: Access to the C. americana genome provides a roadmap for rapid discovery of genes encoding plant-derived agrichemicals and a key resource to understand the evolution of chemical diversity in Lamiaceae. (datadryad.org)
Complementary studies of genes encoding enzymes involved in digestion of woody plant tissues or detoxification of plant allelochemicals were undertaken with the genomes of 14 additional insects, including the newly sequenced emerald ash borer and bull-headed dung beetle. (uni-koeln.de)
However, it remains difficult to identify genes most likely to explain species-specific traits. (biomedcentral.com)
Here, we outline a simple strategy that leverages population-scale allele-specific RNA-seq data to identify genes that show constrained cis- regulation within species yet show divergence between species. (biomedcentral.com)
They have sequenced over 3.4 billion base pairs and more than 26,000 genes in the Koala genome - which makes it slightly larger than the human genome. (earlham.ac.uk)
The cp genome of A. tsao-ko has 120 annotated genes , including 82 protein - coding genes , while A. paratsaoko has 121 annotated genes , including 83 protein - coding genes . (bvsalud.org)
Both cp genomes contained 30 tRNA genes and 8 rRNA genes . (bvsalud.org)
Genome annotation reveals 20,172 protein-coding genes in the G. agassizii assembly, and that gene structure is more similar to chicken than other turtles. (asu.edu)
We provide a series of comparative analyses demonstrating (1) that turtles are among the slowest-evolving genome-enabled reptiles, (2) amino acid changes in genes controlling desert tortoise traits such as shell development, longevity and osmoregulation, and (3) fixed variants across the Gopherus species complex in genes related to desert adaptations, including circadian rhythm and innate immune response. (asu.edu)
Current diagnostic PCR assays target a variety of SARS CoV-2 genes and the vast majority target sequences in regions of the SARS CoV-2 genome that are highly conserved. (who.int)
As the sequencing and gene annotation projects of entire genomes of many species are headed towards completion (see, e.g. [13] ), massive mapping efforts in biology are now focused on how the genes interact. (lu.se)
They have tetraploid genomes with numerous retained duplicated genes. (lu.se)

We report here genome sequences and comparative analyses of three closely related parasitoid wasps: Nasonia vitripennis, N. giraulti, and N. tongicomis. (lu.se)
Kuraku, S. Unbiasing Genome-Based Analyses of Selection: An Example Using Iconic Shark Species. (preprints.org)
Here, we describe best practices for multi-species transcriptomics experiments from the initial experimental design to the downstream differential expression analysis, highlighting important considerations that should be taken for these multi-species analyses when compared to traditional single-species transcriptomics analyses. (biomedcentral.com)
Whole genome duplication analyses revealed three putative events, which together with local tandem duplication events, contributed to gene family expa, American beautyberransion of terpene synthases. (datadryad.org)
PLINK: a tool set for whole-genome association and population-based linkage analyses. (crossref.org)
Five complete genomes were generated, which will help to understand niche adaptation to beer and provide the basis for consecutive analyses. (pacb.com)
In this study, we undertook extensive genome-wide comparative analyses of twelve species that conform the Pectobacterium genus. (mdpi.com)

In parallel, multiple technologies and manual finishing were used to produce an 85-Mb reference genome assembly from the more readily available mouse parasite species T. muris (Online Methods and Supplementary Note ). (nature.com)

We undertook genome sequencing and annotation, gene expression assays, studies of plant cell wall degrading enzymes, and other functional and comparative studies of the Asian longhorned beetle, Anoplophora glabripennis, a globally significant invasive species capable of inflicting severe feeding damage on many important tree species. (uni-koeln.de)
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). (nih.gov)
The Ensembl Rapid Release website provides annotation for recently produced, publicly available vertebrate and non-vertebrate genomes from biodiversity initiatives such as Darwin Tree of Life, the Vertebrate Genomes Project and the Earth BioGenome Project. (ensembl.org)
To aid conservation efforts for preserving the genetic diversity of this species, we generated a whole genome reference sequence with an annotation based on deep transcriptome sequences of adult skeletal muscle, lung, brain, and blood. (asu.edu)

The taxonomy of Enterobacter is complicated by the reassignment to other genera of some species that formerly belonged to the Enterobacter genus. (cdc.gov)
Stingless bees of the genus Melipona are subdivided into 4 subgenera called Eomelipona , Melikerria , Melipona sensu stricto, and Michmelia according to species morphology. (karger.com)
Cytogenetically, the species of the genus Melipona show variation in the amount and distribution of heterochromatin along their chromosomes and can be separated into 2 groups: the first with low content of heterochromatin and the second with high content of heterochromatin. (karger.com)
Hybridization and Polyploidization are most common of the phenomenon observed in plants, especially in the genus Nicotiana leading to the duplication of genome. (scielo.br)
The tetraploid species in genus Nicotiana including section Polydiclae , Repandae , Nicotiana , Rustica and Sauveolentes revealed both up and downsizing in their genome sizes when compared to the sum of genomes of their ancestral species. (scielo.br)
It is concluded that genome size change appeared in either direction whereas the GC contents were found more homogenous in genus Nicotiana . (scielo.br)
The genus Lantana contains 129 accepted species ( The Plant List, 2013 ). (ashs.org)
[10] Although its genus, Streptococcus , includes some pathogenic species, food industries consider S. thermophilus a safer bacterium than many other Streptococcus species. (wikipedia.org)
The genus Streptococcus includes several pathogenic species, such as S. pneumoniae and S. pyogenes , but food industries consider S. thermophilus non-pathogenic. (wikipedia.org)
It is not part of the International Committee on Taxonomy of Viruses classification of viruses (ie, it is not a species, genus, or family), which is based on the nature and structure of the viral genome. (msdmanuals.com)

Genome sequencing of endangered species is the application of Next Generation Sequencing (NGS) technologies in the field of conservation biology, with the aim of generating life history, demographic and phylogenetic data of relevance to the management of endangered wildlife. (wikipedia.org)
The data analysis can be used to compared different sequencing database and find similar sequences, or similar protein in different species. (wikipedia.org)
After the years-long effort of sequencing the historical genome, and comparing the historical results to modern samples, the researchers determined that the Willow Flycatcher had seen an increase in genetic variation over time. (northfortynews.com)
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. (crossref.org)
Whole genome sequencing (WGS), which is the process of determining an organism's complete DNA sequence, can be used to identify DNA anomalies that cause disease. (sciencedaily.com)
Now, in a series of recent studies, scientists at the University of Missouri are using whole genome sequencing through the 99 Lives Cat Genome Sequencing Consortium to identify genetic variants that cause rare diseases, such as progressive retinal atrophy and Niemann-Pick type 1, a fatal disorder in domestic cats. (sciencedaily.com)
In another study representing the first time precision medicine has been applied to feline health, Lyons and her team used whole genome sequencing and the 99 Lives consortium to identify a lysosomal disorder in a 36-week-old silver tabby kitten that was referred to the MU Veterinary Health Center. (sciencedaily.com)
See how the University of Washington used HiFi sequencing to uncover a key finding about ALS and the human genome. (pacb.com)
Our revolutionary sequencing technologies combine the completeness of long reads with the accuracy of short reads to provide the most comprehensive view of genomes, transcriptomes, and epigenomes. (pacb.com)
Genome sequencing found that FMT increased the richness of species with significant donor engraftment. (medscape.com)
I recently wrote an article about the oldest fossils of life on Earth, and I'm writing about genome sequencing this week. (medscape.com)

Anonymous Reviewer ( 2017 ) Peer Review #1 of 'Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea (v0.2)' . (peerj.com)
Our results reveal discordant species divergence dates between mitochondrial and nuclear genomes, with a high frequency of conflicting trees throughout the nuclear genome suggesting that some sea turtle species frequently hybridized in the past. (fmach.it)

By understanding the chromosomal basis of sex of those species, it is possible to reconstruct the phylogenetic history of those families and use more efficient strategies in their conservation. (wikipedia.org)
However, due to the restriction of the limited sequenced species, further analysis needs to be done to alleviate the phylogenetic biases. (syr.edu)
Phylogenetic analysis using a total chloroplast genome DNA sequence of 28 species revealed a close relationship between A. tsao-ko and A. paratsaoko with 100% bootstrap value. (bvsalud.org)
This project aims to employ different cutting-edge bioinformatics techniques to predict deleterious scores of mutations across a comprehensive dataset of avian genomes, representing a broad swath of the avian phylogenetic tree, and compare their accuracy. (lu.se)

We used over 200 contemporary samples from the Willow Flycatcher to scan the genetic material for specific regions of the genome associated with important environmental variables," said Turbek. (northfortynews.com)
Mutations in other regions of the genome may also be informative for known VOI/VOC detection. (who.int)

The access to all these data and the interrogation of genome-wide variation of SNP markers can help the identification of the genetic changes that influence the fitness of wild species and are also important to evaluate the potential respond to changing environments. (wikipedia.org)
NGS projects are expected to rapidly increase the number of threatened species for which assembled genomes and detailed information on sequence variation are available and the data will advance investigations relevant to the conservation of biological diversity. (wikipedia.org)
Sometimes even variation of sex chromosomes within amphibian populations of the same specie were reported. (wikipedia.org)
In contrast, a gene that is under strong stabilizing selection-with little variation in expression within species but with a two-fold change between species-is more likely to have contributed to phenotypic divergence between species. (biomedcentral.com)
An extensive literature documenting physiological and ecological diversity make Daphnia an ideal model to study the genetic architecture of phenotypic variation in natural populations and the evolution of genome structure/function relationships in aquatic environments. (biomedcentral.com)
Ensembl is a genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation. (ensembl.org)
Following these SNP (single nucleotide polymorphism) data, reference pseudomolecules/ scaffolds/contigs and genome-wide variation information for almost all of the closely and distantly related wild Oryza species from the NIG Wild Rice Collection will be available in future releases. (edu.sa)

In order to preserve a specie, knowledge of the mating system is crucial: scientists can stabilize wild populations through captive breeding, followed by the release in the environment of new individuals. (wikipedia.org)
Ancient human genomes suggest three ancestral populations for present-day Europeans. (crossref.org)
Retrotransposon populations of Vicia species with varying genome size. (dundee.ac.uk)
The (non-LTR) LINE and Ty3-gypsy-type LTR retrotransposon populations of three Vicia species that differ in genome size (Vicia faba, Vicia melanops and Vicia sativa) have been characterised. (dundee.ac.uk)
Five of the seven extant sea turtle species are known to currently hybridize, especially along the Brazilian coast where some populations can have ~32%-42% of hybrids. (fmach.it)

This task is particularly difficult by considering the species with homomorphic sex chromosomes and a large genome. (wikipedia.org)

This may involve the estimation of recent demographic events, genetic variations, divergence between species and population structure. (wikipedia.org)
They have pinpointed a previously hidden 'whole genome duplication' (WGD) in the common ancestor of these species, which seemingly opened the door to genetic variations that may have conferred an advantage around the time of a major mass extinction some 200 million years ago. (sciencedaily.com)
Whole genome duplication is exactly as it sounds -- it's a fascinating evolutionary event where an entire genome is copied and pasted so that a species suddenly has twice the genetic material as it did before. (sciencedaily.com)
Newly developed genome resources advance Nasonia for genetic. (lu.se)
Newly developed genome resources advance Nasonia for genetic research, accelerate mapping and cloning of quantitative trait loci, and will ultimately provide tools and knowledge for further increasing the utility of parasitoids as pest insect-control agents. (lu.se)
While it's relatively simple for scientists to track and record a species' geographic movements, proving their genetic adaptation over time can be much more difficult. (northfortynews.com)
Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth. (crossref.org)
In the first study, Lyons and her team used the 99 Lives consortium to identify a genetic mutation that causes blindness in the African black-footed cat, an endangered species often found in U.S. zoos. (sciencedaily.com)
Reconstructing past events of hybridization and population size changes are required to understand speciation mechanisms and current patterns of genetic diversity, and ultimately contribute to species' conservation. (fmach.it)
The Koala Genome Consortium has been an ambitious journey affording us great insights into the genetic building blocks that make up a koala - one of Australia's, as well as the world's, most charismatic and iconic mammals. (earlham.ac.uk)
Most natural cloning occurs in those species that produce their descendants asexually, that is, without combining the male and female genetic material. (who.int)

In hybrids, the genomes of both species share the same nucleus and are exposed to identical environments, so there are no confounding environmental, batch, compositional, or developmental effects. (biomedcentral.com)
In hybrids, the genomes of the two species are exposed to the same trans factors. (biomedcentral.com)
The genome sizes of three homoploid hybrids were found near their ancestral species. (scielo.br)

Genome Insider: A Shrubbier Version of Rubber Hear from the consortium working on understanding the guayule plant's genome, which could lead to an improved natural rubber plant. (doe.gov)
Scientists at the Earlham Institute in Norwich, UK, have played a major role as part of a consortium led by the Australian Museum Research Institute and the University of Sydney to sequence the koala genome for the first time, with the findings published in Nature Genetics. (earlham.ac.uk)
Heliconius Genome Consortium. (kronforstlab.org)

2019) Human Papillomavirus 16 sub-lineage dispersal and cervical cancer risk worldwide: whole viral genome sequences from 7 116 HPV16-positive women. (who.int)

Examples of these pathogens include Chlamydiae, Chlamydophila species, and rickettsiae. (msdmanuals.com)
Each individ- cluding immune cells, but also the was previously cal ed the gastroin- ual harbours hundreds of different metabolic and nervous systems), testinal flora or microflora, the more species, most of which have not and protecting against pathogens pragmatic term "microbiota" is now yet been cultured. (who.int)

A catalogue of 178 reference bacterial birth, and the delivery type is the first core of species has been identified genomes distributed among different factor that has an impact. (who.int)

At least 26 strains of S. thermophilus have been identified and had their genomes sequenced. (wikipedia.org)
Research teams have sequenced the genome of two strains of S. thermophilus , CNRZ1066 and LMG13811, and stated that the bacteria are not dangerous. (wikipedia.org)

Multiple whole genome duplication events famously occurred in our ancient early vertebrate ancestors and these have shaped the landscape of our modern human genome. (sciencedaily.com)
Vertebrate Genomes Project. (crossref.org)
I'm the only bird species (actually the only vertebrate) that's found in the UK and nowhere else! (imascientist.org.uk)

Polyploid and homoploid hybridization are two important evolutionary phenomena involved at species levels. (scielo.br)
Evolutionary consequences associated with hybridization events have been studied at various levels such as chromosomal rearrangements, repetitive DNA sequence evolution, genome size change, and diploidization ( Hegarty and Hiscock, 2008 HEGARTY, M.J. and HISCOCK, S.J., 2008. (scielo.br)
Hybridization and genome size evolution: timing and magnitude of nuclear DNA content increases in Helianthus homoploid hybrid species. (scielo.br)
In this study, we generated whole genome resequencing data of the five globally distributed sea turtle species to estimate a calibrated phylogeny and the population size dynamics, and to understand the role of hybridization in shaping the genomes of these ancient species. (fmach.it)
Speciation with gene flow is a common pattern in marine species, and it raises questions whether current hybridization events should be considered as a part of these species' evolutionary history or a conservation issue. (fmach.it)

Silver Age of GOLD Introduces New Features The Genomes OnLine Database makes curated microbiome metadata that follows community standards freely available and enables large-scale comparative genomics analysis initiatives. (doe.gov)
A demonstration of conservation genomics for threatened species management. (crossref.org)
Co-lead author at the University of Sydney, Professor of Comparative Genomics, Katherine Belov said: "The genome provides a springboard for the conservation of this biologically unique species. (earlham.ac.uk)

Sheela Turbek, a postdoctoral researcher in CSU's Department of Biology , led this study that sequenced the genomes of the Willow Flycatcher over a 100-plus year period, comparing DNA from museum specimens from the late 1800s to modern samples taken today. (northfortynews.com)
Scientists at Oak Ridge National Laboratory (ORNL) in Tennessee have used their expertise in quantum biology, artificial intelligence, and bioengineering to improve how CRISPR/Cas9 genome editing tools work on organisms like microbes that can be modified to produce renewable fuels and chemicals. (bioquicknews.com)
This thematic series of companion papers constitutes the initial exploration of the genome biology of the waterflea (Daphnia) building on the first complete crustacean genome sequence. (biomedcentral.com)

Genome Biol. (uni-koeln.de)

These variable loops contribute significantly to corresponding gene expression variability across cells and species, possibly by refining sub-TAD-scale loop contacts responsible for cell-type-specific enhancer-promoter interactions. (nature.com)
We describe best practices for multi-species transcriptomics and differential gene expression. (biomedcentral.com)
As a result, comparing gene expression between species can enable the identification of molecular changes underlying phenotypic divergence. (biomedcentral.com)
The trans -component stems from changes in diffusible molecules such as transcription factors that can regulate gene expression throughout the genome. (biomedcentral.com)

The analysis of multi-species transcriptomics datasets requires modifications to the alignment, quantification, and downstream analysis steps compared to the single-species analysis pipelines. (biomedcentral.com)

We produced a 75.2-Mb high-quality draft genome assembly from a clinically isolated adult male T. trichiura using Illumina technology. (nature.com)
The draft genome assembly for G. agassizii has a scaffold N50 length of 252 kbp and a total length of 2.4 Gbp. (asu.edu)
The first draft of the human genome and thus provides a very rich function- der healthy conditions. (who.int)

We report here the whole-genome sequences of the human-infective Trichuris trichiura and the mouse laboratory model Trichuris muris . (nature.com)
Here we present high-quality genome sequences for T. trichiura and T. muris , the first duo of a major human STH and its mouse counterpart. (nature.com)
The availability of these two important whipworm genomes and the integration of parasite and host data presented here will underpin future efforts to control these parasites and exploit their immunological interplay for human benefit. (nature.com)
Human-induced climate change is really having a drastic effect on the reproductive activities of many species, and it is going to drive a lot of organisms to the brink of extinction," said Turbek. (northfortynews.com)
Davydov EV, Goode DL, Sirota M, Cooper GM, Sidow A, Batzoglou S. Identifying a high fraction of the human genome to be under selective constraint using GERP++. (crossref.org)
It was the UK home for the Human Genome Project - which revealed the entire DNA code of life. (imascientist.org.uk)
But what does it mean?Arguably the most significant scientific discoveru of the new century, the mapping of the twenty-three pairs of chromosomes that make up the human genome raises almost as many questions as it answers. (thebooks.pl)
Occasionally, other mosquito types (eg, Coquillettidia perturbans and the ubiquitous Aedes canadensis species) may act as bridges in the horse-to-human transmission. (medscape.com)
The focus is on pathogen genomes, applying advances in molecular and bioinformatics methods first developed for human genome research. (cdc.gov)
Three species of Chlamydia cause human disease, including sexually transmitted infections and respiratory infections. (msdmanuals.com)
The editing of the human genome will permanently alter our species biologically, in ways large and small. (lu.se)
I reject the essentializing assumption behind such claims, namely that the human genome has a moral status as such. (lu.se)

Genome Insider: Methane Makers in Yosemite's Lakes Meet researchers who sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains to see how climate change affects freshwater ecosystems, and how those ecosystems work. (doe.gov)
Compared with other available methods designed for estimating taxonomic composition at a relatively low taxonomic rank, TAEC demonstrates greater accuracy in quantification of genomes in a given microbial sample. (arizona.edu)

Whereas most species, like us, are 'diploid' -- having pairs of chromosomes, one from each parent -- after whole genome duplication everything is in four copies. (sciencedaily.com)
a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes. (crossref.org)

The comparison can be done using informatic software based on alignment to know the divergence between different species and evaluate the similarities. (wikipedia.org)

To provide insights into the roles of repetitive elements in fish genomes, we conducted a comparative analysis of repetitive elements of 52 fish species in 22 orders in relation to their living aquatic environments. (syr.edu)
Earlham Institute's former Director of Science, Professor Federica di Palma, added: "This important and very successful collaboration with our partners in Australia has paved the way for future research into decoding other marsupial genomes, which will have important insights into improving conservation and better understanding health. (earlham.ac.uk)

However, 3D genome evolution and its relationship with natural selection remains largely unexplored. (nature.com)
Tracing the Evolution of Shiitake Mushrooms Understanding Lentinula genomes and their evolution could provide strategies for converting plant waste into sugars for biofuel production. (doe.gov)
Therefore, a large and significant fold change alone is not sufficient to determine the importance of the gene in the evolution of the parental species. (biomedcentral.com)
Conclusions: The enriched association of specific categories of repetitive elements with fish habitats suggests the importance of repetitive elements in genome evolution and their potential roles in fish adaptation to their living environments. (syr.edu)
The ups and downs of genome size evolution in polyploid species of Nicotiana (Solanaceae). (scielo.br)
Daphnia magna is a well-established model species in ecotoxicology, ecology and evolution. (biomedcentral.com)

Together, these genomes and associated functional data elucidate key aspects of the molecular host-parasite interactions that define chronic whipworm infection. (nature.com)

Compare our genome with that of our Belgian cousins and you'll reveal many secrets about how animals adapt to harsh environments. (imascientist.org.uk)

In general, Melipona species have 2n = 18 chromosomes, and the species of each subgenus share the same characteristics in relation to heterochromatin regions, DAPI/CMA 3 fluorophores, and the number and distribution of 18S rDNA sites. (karger.com)
By picking one newly discovered gene from each pair of chromosomes and telling its story, Matt Ridley recounts the history of our species and its ancestors from the dawn of life to the brink of future medicine. (thebooks.pl)

The student will have access to hundreds of genomes from both endangered and non-endangered bird species. (lu.se)

L. camara is the most commonly cultivated species, with hundreds of cultivars around the world ( Sanders, 2012 ). (ashs.org)

The VOC differ from the original Wuhan virus as they have mutations across the genome. (who.int)
Overall, these assays and approaches detect specific mutations or features such as insertions, deletions and point mutations in the SARS CoV-2 genome that are characteristic of a particular VOC/VOI using PCR. (who.int)

With a statistical and bioinformatic approach scientists can make considerations about big genomes, by just focusing on a small representative part of it. (wikipedia.org)
Turbek and Ruegg are excited to be able to validate scientists' predictions of how some species will adapt to climate change. (northfortynews.com)
From 6th November - 8th December , a team of scientists and wildlife experts will each champion a species they think should have its entire DNA sequence decoded, competing for votes from students and the general public. (imascientist.org.uk)
Until recently, only the simplest genomes were available to public health scientists and even those were generally known only by their fingerprints. (cdc.gov)

Bioinformatics approaches outlined a low nucleotide identity of P. parmentieri and P. wasabiae with other species, while P. carotovorum subsp. (mdpi.com)

Chromatin looping is important for gene regulation, and studies of 3D chromatin structure across species and cell types have improved our understanding of the principles governing chromatin looping. (nature.com)
Lantana species are an important component of the U.S. environmental horticulture industry. (ashs.org)
The two pathovars of this economically important species of plant pathogenic bacteria differ in host range and other interactions with plants, with Pss having a more pronounced epiphytic stage of growth and higher abiotic stress tolerance and Pst DC3000 having a more pronounced apoplastic growth habitat. (nih.gov)
Long terminal repeat (LTR) retroelements represent a successful group of transposable elements (TEs) that have played an important role in shaping the structure of many eukaryotic genomes. (biomedcentral.com)
Multiple genome sequences of the important beer-spoiling species Lactobacillus backii. (pacb.com)
Lactobacillus backii is an important beer-spoiling species. (pacb.com)
More knowledge is needed about functions and activation of the estrogen receptor in economically important fish species such as salmon and trout, which are my primary target species. (lu.se)

Compared to single-species differential expression analysis, the design of multi-species differential expression experiments must account for the relative abundances of each organism of interest within the sample, often requiring enrichment methods and yielding differences in total read counts across samples. (biomedcentral.com)
With this increasing complexity, best practices are needed for properly designing and conducting a differential expression analysis within a multi-species transcriptomics experiment. (biomedcentral.com)
Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX. (crossref.org)
Now, researchers from the Hebrew University of Jerusalem (HU) reporting in the journal Cell have new insight into the Canaanites' history based on a new genome-wide analysis of ancient DNA collected from 73 individuals. (jewishpress.com)
Sequence analysis of the Daphnia pulex genome holds some surprises that could not have been anticipated from what was learned so far from other arthropod genomes. (biomedcentral.com)

Arbovirus (arthropod-borne virus) is defined as any virus that is transmitted to humans and/or other vertebrates by certain species of blood-feeding arthropods, mostly insects (flies and mosquitoes) and arachnids (ticks). (msdmanuals.com)

The microbiome, the "other ge- species have no representative in nome" or "second genome" of the culture collections. (who.int)

These processes have regularly contributed in diversification of plant species. (scielo.br)
Diversification of the P genome among Agropyron Gaertn. (pensoft.net)

The organisms studied in dual-species transcriptomics experiments are present in different relative abundances and while the read proportions between the two organisms differ by system, most infection models, particularly biologically relevant models, have the total RNA content of the host vastly outnumbering microbe [ 15 ]. (biomedcentral.com)
Nuclear DNA content in these species ranged from 2.74 pg/2C ( L . involucrata ) to 6.29 pg/2C ( L. depressa var. (ashs.org)
The results show significant differences in nuclear DNA content, chromosome number, and karyotype among three native and two introduced lantana species and will help to identify, preserve, protect, and use native lantana species. (ashs.org)

Background: Repetitive elements make up significant proportions of genomes. (syr.edu)
Results: The proportions of repetitive elements in various genomes were found to be positively correlated with genome sizes, with a few exceptions. (syr.edu)
More importantly, there appeared to be specific enrichment between some repetitive element categories with species habitat. (syr.edu)

Dual-species transcriptomics or dual-RNA-seq studies use transcriptomics to assess the transcriptional profiles of multiple organisms originating from the same sample [ 15 ]. (biomedcentral.com)
However, compared to typical transcriptomics studies, dual-species transcriptomics studies are technically challenging due to a difference in the proportion of reads from the major and minor organisms in the system, where major and minor refer to transcript abundance. (biomedcentral.com)
As library enrichment methods have improved, dual-species transcriptomics studies expanded to include the study of eukaryote-eukaryote and prokaryote-prokaryote systems. (biomedcentral.com)

Comparison of the complete genome sequences of Pseudomonas syringae pv. (nih.gov)
Here, we have sequenced the two complete chloroplast genomes of Amomum tsao-ko and Amomum paratsaoko, which are 163,612 bp and 163,487 bp in length, respectively, and exhibited LSC and SSC regions separated by a pair of inverted repeat regions. (bvsalud.org)

Anatomy15

Organisms33

Diseases3

Chemicals and Drugs38

Analytical, Diagnostic and Therapeutic Techniques and Equipment33

Phenomena and Processes140

Disciplines and Occupations5

Technology, Industry, Agriculture3

Information Science15

Health Care5

Repeated sequences1

Genomic17

Genes15

Analyses7

Reference genome1

Annotation4

Genus10

Sequencing11

Mitochondrial2

Phylogenetic4

Regions of the genome2

Variation7

Populations5

Large genome1

Genetic11

Hybrids3

Consortium3

Viral genome1

Pathogens2

Bacterial1

Strains2

Vertebrate3

Hybridization5

Genomics3

Biology3

Biol1

Gene expression4

Datasets1

Draft3

Human12

Microbial2

Diploid2

Divergence1

Insights2

Evolution6

Molecular1

Reveal1

Chromosomes2

Bird Species1

Cultivars1

Mutations2

Scientists4

Bioinformatics1

Important7

Analysis5

Arthropods1

Microbiome1

Diversification2

Content3

Repetitive3

Dual-species3

Complete2