Evolution, MolecularGenomeGenome, BacterialPhylogenyGenome, PlantGenome, ViralGenome, MitochondrialSequence Analysis, DNASyntenyGenome, HumanModels, GeneticMolecular Sequence DataBase SequenceGenomicsGenome, FungalGene DuplicationSelection, GeneticGenetic VariationDirected Molecular EvolutionGene Transfer, HorizontalSpecies SpecificityGenome SizeGenome, ArchaealRetroelementsGenome, InsectSequence AlignmentGene OrderMultigene FamilyChromosome MappingGenome, ProtozoanDNA Transposable ElementsDNA, PlantAmino Acid SequencePolyploidyRecombination, GeneticGenome, PlastidChromosomes, PlantPseudogenesBiological EvolutionConserved SequenceGenome, ChloroplastPrimatesSymbiosisAdaptation, BiologicalComputational BiologyMutationGenome, HelminthSequence Homology, Nucleic AcidMutation RateOpen Reading FramesPan troglodytesChromosomes, Artificial, BacterialGenes, PlantSorghumBase CompositionRepetitive Sequences, Nucleic AcidCultural EvolutionBuchneraGenetic SpeciationAngiospermsGene RearrangementDNA, MitochondrialMammalsDNA, IntergenicExpressed Sequence TagsIntronsTetraodontiformesContig MappingDatabases, GeneticOryza sativaGenes, DuplicateTerminal Repeat SequencesPlastidsLikelihood FunctionsEukaryotaEukaryotic CellsCodonMolecular Sequence AnnotationClonal EvolutionBrassica rapaCuscutaMicrosporidiaIsochoresProkaryotic CellsINDEL MutationDiplomonadidaBacteriaAdaptation, PhysiologicalConvolvulaceaeInterspersed Repetitive SequencesChromosome InversionPlantsAlgorithmsPhysical Chromosome MappingSequence Homology, Amino AcidComputer SimulationChromosomesChromosomes, InsectSoftwarePhenotype