TranscriptomeGene Expression ProfilingGene ExpressionGene Expression RegulationOligonucleotide Array Sequence AnalysisRNA, MessengerTranscription, GeneticGene Expression Regulation, PlantSequence Analysis, RNAMolecular Sequence AnnotationGene Expression Regulation, DevelopmentalExpressed Sequence TagsReverse Transcriptase Polymerase Chain ReactionHigh-Throughput Nucleotide SequencingCluster AnalysisGene Expression Regulation, BacterialBase SequenceTranscription FactorsMolecular Sequence DataPromoter Regions, GeneticGene Expression Regulation, NeoplasticMicroarray AnalysisGene LibrarySignal TransductionGene Regulatory NetworksGene Expression Regulation, EnzymologicSequence Analysis, DNAGenes, PlantDatabases, GeneticComputational BiologyGene OntologyGene Expression Regulation, FungalRNA, PlantGene Expression Regulation, ViralCells, CulturedGenomicsRNACell LineDNA-Binding ProteinsDNA, ComplementaryReal-Time Polymerase Chain ReactionUp-RegulationArabidopsisMutationReproducibility of ResultsGenomeDown-RegulationModels, GeneticPhenotypeProteomeCell DifferentiationGenes, ReporterMicroRNAsCell Line, TumorStress, PhysiologicalOrgan SpecificityContig MappingPolymerase Chain ReactionDNA PrimersMice, Inbred C57BLPlant ProteinsMultigene FamilyTime FactorsRepressor ProteinsBlotting, NorthernTranscriptional ActivationIn Situ HybridizationAlgorithmsTrans-ActivatorsGenome, PlantAmino Acid SequenceTransfectionMetabolic Networks and PathwaysModels, BiologicalNuclear ProteinsPlant RootsBacterial ProteinsPlant LeavesAlternative SplicingLiverPhylogenySoftwareSpecies SpecificityRNA, UntranslatedGenome, HumanChromosome MappingEpigenesis, GeneticBinding SitesPrincipal Component AnalysisArabidopsis ProteinsHomeodomain ProteinsSequence AlignmentEvolution, MolecularChromatin ImmunoprecipitationDNABlotting, WesternGene SilencingHistonesProtein BindingRNA Interference