Biological EvolutionEvolution, MolecularPhylogenySelection, GeneticModels, GeneticGenetic SpeciationGenetic VariationAdaptation, BiologicalGene FlowSequence Analysis, DNAGenetics, PopulationLikelihood FunctionsPopulation DynamicsEcosystemSpecies SpecificityGenetic FitnessGeographyCrepisGene DuplicationMolecular Sequence DataBayes TheoremMutation RateDNA, MitochondrialPhylogeographyReproduction, AsexualSequence AlignmentComputer SimulationAmplified Fragment Length Polymorphism AnalysisGenomeClonal EvolutionGenetic DriftEnvironmentGene Transfer, HorizontalBase SequenceHybridization, GeneticMicrosatellite RepeatsPseudogenesModels, BiologicalClassificationPolyploidyPrimatesGenome, BacterialReproductive IsolationAdaptation, PhysiologicalGenes, DuplicatePopulation DensityMutationEcologyBiodiversityGenomicsExtinction, BiologicalInvertebratesVertebratesFernsBody SizeLizardsAsteraceaeFossilsInsectsCytochromes bArchaeaMammalsDirected Molecular EvolutionComputational BiologyRecombination, GeneticAngiospermsReproductionDNA, PlantMultigene FamilySmegmamorphaGenome, MitochondrialPhenotypeAmino Acid SequenceCodonDNA, ChloroplastIntroduced SpeciesPigmentationGenetic LociPlantsArthropodsSymbiosisGenome, ArchaealFishesAlgorithmsPolymorphism, GeneticGenes, PlantGenome, InsectHominidaeBirdsConserved SequenceHaplotypesEukaryotaDemographySequence HomologyStochastic ProcessesMarkov ChainsSyntenySexual Behavior, AnimalModels, TheoreticalClimate