More importantly, the abundance of microbial taxa was markedly differentiated at the low (1.5 g/kg) and high (3.0 g/kg) dose of spirulina , among which the relative abundance of Clostridium XIVa, Desulfovibrio, Eubacterium, Barnesiella, Bacteroides , and Flavonifractor were modulated at various degrees. (frontiersin.org)
Changes in microbiome composition and taxa differential abundance were studied using 16S rRNA gene sequencing data. (mydreamstories.com)
RESULTS: When this artificial inflation in the observed number of taxa is ignored, we find that changes in the abundance of detected taxa confound current methods for inferring differences in richness. (nevinmanimala.com)
We proceed to model a 16S survey's systematic patterns of sub-genus taxa generation as a function of genus abundance to derive a robust control for false taxa accumulation. (nevinmanimala.com)
These controls unlock classical regression approaches for highly flexible differential richness inference at various levels of the surveyed microbial assemblage: from sample groups to specific taxa collections. (nevinmanimala.com)
Species7
CONCLUSIONS: False species discoveries bias richness estimation and confound differential richness inference. (nevinmanimala.com)
Nitrogen fertilization and native C4 grass species alter abundance, activity and diversity of soil diazotrophic communities. (utk.edu)
The community had a high level of evenness (0.93 Shannon evenness) and lacked a dominant species, with no one species obtaining more than 7% relative abundance. (hindawi.com)
Species accumulation curves indicate near maximum diversity was reached for each site and the study as a whole (93% maximum calculated Shannon Diversity). (hindawi.com)
21 species and 277 gene markers were identified whose abundance was significantly increased or decreased from normal to AA and CRC. (biomedcentral.com)
Despite dramatic changes in biomass and abundance of the species in the area, the boundaries and composition of the assemblages seem to be similar to the period before the collapse. (nafo.int)
This study provided new insights for the investigation of the molecular basis of Pb tolerance and accumulation in tall fescue as well as other related turf grass species. (biomedcentral.com)
Lipid2
Interestingly, Fe2+ accumulation, lipid peroxidation, and differential expression of ferroptosis proteins were observed in the intestinal tissues of benzene-exposed mice. (bvsalud.org)
The observed significant variations of morphology, lipid accumulation, and metabolism in the renal cortex implicated that lipids in the renal cortex were more sensitive to BPS exposure than those in the renal medulla and pelvis. (edu.hk)
Transcript abundance4
Transcript abundance, however, did not appear to be the main driver of protein accumulation in the transgenic these plant lines. (cornell.edu)
hexokinase transcript abundance and enzyme activity were significantly higher during diestrus and pregnancy than estrus and anestrus. (biomedcentral.com)
In addition, despite similar relative transcript abundance, hexokinase activity was significantly greater in the pregnant versus diestrous endometrium. (biomedcentral.com)
Differential gene expression analysis of these eight GmMATE genes in response to Al stress helps us identify GmMATE75 as the candidate gene for Al tolerance in soybean, whose relative transcript abundance increased at 6, 12 and 24 h after Al treatment, with more fold changes in Al-tolerant than Al-sensitive cultivar, which is consistent with previously reported Al-tolerance related MATE genes. (biomedcentral.com)
Significant differential3
Proteins that showed significant differential expression included phospholipid phosphatase 3, stromal cell-derived factor 1, collagen alpha-1 (IV) chain, hyaluronan and proteoglycan link protein 1, and thrombospondin-1. (elsevierpure.com)
Significant differential signaling lipids such as sphingomyelin (SM) (d22:0/20:4), ceramide (Cer) (d18:2/24:1), and sphingosine (d18:0) related to inflammation were found to be up-regulated and colocalized in the renal cortex, medulla, and pelvis, respectively. (edu.hk)
Also, seven significant differential lipids, which are considered to be involved in membrane homeostasis and cellular function, were found to be colocalized in the renal cortex. (edu.hk)
Plastid2
Analysis of codon usage within the downstream box regions tested showed that high-level protein accumulation correlated with frequently used plastid codons. (cornell.edu)
Moreover, an analysis of codon usage within highly expressed plastid ORFs revealed differential codon usage within the DB regions of highly expressed genes as compared with the overall codon usage within the chloroplast, similar to observations in E. coli. (cornell.edu)
Oxidative2
Differential impact of some metal(loid)s on oxidative stress, antioxidant system, sulfur compounds, and protein profile of Indian mustard (Brassica juncea L. (edu.sa)
Activated defense responses consist of callose deposition in cell walls, oxidative burst, and accumulation of phytohormones and antimicrobial chemicals (e.g., secondary metabolites and phytoalexins) [ 4 ]. (researchsquare.com)
Inference2
The proposed methodology for differential richness inference is available through an R package, Prokounter. (nevinmanimala.com)
Based on this finding, a flexible method is proposed and is shown to overcome the confounding problem noted with current approaches for differential richness inference. (nevinmanimala.com)
Populations2
Elevated accumulation of lineage-specific pseudogenes after divergence from generalist populations and possible metabolic acclimation in a representative swine isolate indicates possible emergence of host adaptation. (cdc.gov)
We investigated differential TE abundance among conspecific populations of the nonbiting midge Chironomus riparius and evaluated their potential role in causing endogenous genetic incompatibilities between these populations. (waldvogel-lab.com)
Proteins1
This quantitative mass spectrometric analysis detected 8041 proteins and defined a proteomic signature of differential expression across affected individuals and controls. (elsevierpure.com)
Variation1
With the continuous exposure of environmental pollutants in organisms, determination of abundance variation and spatial distribution of lipids might expand our understanding of toxicological mechanisms occurring in the kidney. (edu.hk)
Gene1
Several single gene disorders share clinical and radiologic characteristics with multiple sclerosis and have the potential to be overlooked in the differential diagnostic evaluation of both adult and paediatric patients with multiple sclerosis. (medscape.com)
Downstream1
The DB region, comprised of the 10-15 codons immediately downstream of the start codon, has previously been shown to be an important factor in determining foreign protein accumulation in chloroplasts and in other prokaryotic systems through an unknown mechanism. (cornell.edu)
Divergence1
Population divergence involves the accumulation of genetic differences across the genome. (waldvogel-lab.com)
Tolerance2
To estimate genes related to Pb response and the molecular mechanism associated with Pb tolerance and accumulation, we analyzed the transcriptome of tall fescue in response to Pb treatment. (biomedcentral.com)
The significant expression difference of specific unigenes may account for Pb tolerance or accumulation in two different tall fescue cultivars. (biomedcentral.com)
Occurs2
Generation and accumulation of plastic pollution also occurs in closed bays, gulfs and seas surrounded by densely populated coastlines and watersheds [10] - [13] . (plos.org)
Degradation of carbon tetrachloride occurs slowly in the environment, which contributes to the accumulation of the chemical in the atmosphere as well as the groundwater. (cdc.gov)
Specific3
However, methods to analyze accumulation of specific compounds in individual living cells from a community, followed by recovery and isolation, are still limited. (frontiersin.org)
Over time, dehydration melting reactions will consume all of the hydrous phases in a rock, meaning that the amount of melt generated through these reactions is controlled by the abundance and stability of specific hydrous phases. (wikipedia.org)
Overall, we observed distinct alterations in specific glycoproteins, but our data revealed no global accumulation of glycopeptides in the patient-derived fibroblasts, despite the genetic defect in NGLY1. (elsevierpure.com)
Expression4
Chloroplast expression of cel6A and bglC with the various DB fusions resulted in the accumulation of active protein varying over more than 2 orders of magnitude, from less than 0.1% of total soluble protein (%TSP) to over 10%TSP. (cornell.edu)
Our results suggest that Indian mustard has a differential mode of defense against a particular stressor at the level of protein expression profile. (edu.sa)
Differential expression was validated by quantitative RT-PCR of five genes ( GAB1, MAPK9, PIK3C2B, PIK3C3 and PRKCH ) that are involved in several relevant signaling pathways. (biomedcentral.com)
The differential expression between the two breeds at fetal stages likely reflects the prenatal initiation of postnatal phenotypes concerning the number and shape as well as functionality of teats. (biomedcentral.com)
Global1
Plastic pollution is ubiquitous throughout the marine environment, yet estimates of the global abundance and weight of floating plastics have lacked data, particularly from the Southern Hemisphere and remote regions. (plos.org)
Activity1
The accumulation of transcripts that are up-regulated in GL compared to PI indicate a higher proliferating activity in GL, whereas processes related to differentiation, maturation and maintenance of cells are more prominent in PI. (biomedcentral.com)
Depth1
Beneath the Earth's surface, pressure increases with depth due to the accumulation of overlying rock. (wikipedia.org)
Higher1
HSP (15.7 kDa) and autophagy protein 5-like were in higher abundance under As and combined stress. (edu.sa)
Activation2
Furthermore, we found that benzene altered the intestinal barrier in mice, leading to an increase in the abundance of Bacteroidaceae and the activation of systemic inflammation. (bvsalud.org)
This allowed identification of a set of transcripts undergoing maturation by intron removal during activation and resulting in accumulation of the corresponding peptides at exon-exon junctions. (nature.com)
Potential2
Soybean MATE family could be classified into four subfamilies comprising ten smaller subgroups, with diverse potential functions such as transport and accumulation of flavonoids or alkaloids, extrusion of plant-derived or xenobiotic compounds, regulation of disease resistance, and response to abiotic stresses. (biomedcentral.com)
The BPS exposure remarkable perturbed abundances of 91 potential markers that mainly involved in five metabolic pathways. (edu.hk)
Cells1
To implement this screening approach, cells from wastewater sludge samples were stained with 4'6-diamidino-2-phenylindole (DAPI) to target cells with high polyphosphate (polyP) accumulation. (frontiersin.org)