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BacteriaPhylogenyPlanctomycetalesRNA, Ribosomal, 16SChloroflexiMicrobial ConsortiaBacteroidetesMetagenomeBiodiversityDNA, RibosomalSequence Analysis, DNAProteobacteriaPoriferaGenome, BacterialDNA, BacterialMetagenomicsBacterial Physiological PhenomenaArchaeaBiotaGenes, rRNASoil MicrobiologyMolecular Sequence DataGene Transfer, HorizontalRNA, BacterialGastrointestinal TractEvolution, MolecularBase CompositionEcosystemGenes, BacterialBacterial ProteinsBase SequenceInvertebratesGenetic VariationCnidariaAnnelidaPlatyhelminthsHydrozoaCtenophoraEchinodermataCytophagaApicomplexaAcidobacteriaActinobacteriaPlacozoaArthropodsGeologic SedimentsIsopteraEukaryotaCytophagaceaeSeawaterRNA, Ribosomal, 18SSea AnemonesBiological EvolutionSpecies SpecificityFusobacteriaHot SpringsChordata, NonvertebrateCluster AnalysisFungiMicrobiotaNematodaVerrucomicrobiaWater MicrobiologySequence AlignmentGram-Negative Aerobic Rods and CocciBryozoaFatty AcidsBacterial Typing TechniquesRNA, Ribosomal, 28SRhizosphereCrenarchaeotaAmino Acid SequencePalauFresh WaterVertebratesAlveolataSequence Homology, Nucleic AcidVeillonellaceaeSymbiosisFlavobacteriumBacteria, AnaerobicGroundwaterRotiferaHeterotrophic ProcessesFlexibacterChordataPolyplacophoraGene OrderDenaturing Gradient Gel ElectrophoresisMolluscaConserved SequenceEncephalitozoon cuniculiBacteroidesMicroscopy, Electron, TransmissionSewageMuramic AcidsSequence Homology, Amino AcidVitamin K 2TardigradaAquatic Organisms
FirmicutesProteobacteriaActinobacteriaBacteriaTaxaArchaealSpeciesMicrobiotaRRNA geneAcidobacteriaGeneraSequencesAbundant phylaCompositionAbundanceMicrobiologyVerrucomicrobiaDiversity of bacterialCyanobacteriaBacteroidotaMolecular BiologyPathogensHighly abundantStrainsTaxonomyGenomesMicrobiomeInfectionCommunity structuresCommunitiesPutativeFunctionally2017AbstractProkaryotesAntibioticInfectionsProcessesIntestinalMajorSamples
Firmicutes12
Proteobacteria4
  • It has been proposed that some classes of the phylum Proteobacteria may be phyla in their own right, which would make Proteobacteria a superphylum. (wikipedia.org)
  • The results indicated that the dominant bacterial phyla in the samples were Acidobacteriota , Proteobacteria , Actinobacteriota , Chloroflexi . (researchsquare.com)
  • Gram negative bacterial phyla present in the dog's skin include Proteobacteria, of which acinetobacter and pseudomonas are popular pathogens, and Bacteroides. (mypetneedsthat.com)
  • Barrier agains t pathogen s gut bacterial genes in the MetaHIT ation when attempting to extrapolate [10], although Proteobacteria, Ver- catalogue were also well represent- results obtained in mouse models to rucomicrobia, and Fusobacteria are ed in the other metagenomes that the situation in humans. (who.int)
Actinobacteria2
  • The genus Actinomyces belongs to the family Actinomycetaceae, order Actinomycetales, and phyla Actinobacteria . (medscape.com)
  • Two thirds of all known antibiotics come from streptomycetes and their relatives within the phylum Actinobacteria, and about half of the clinically used antibiotics are from the genus Streptomyces . (lu.se)
Bacteria12
  • Bacterial phyla constitute the major lineages of the domain Bacteria. (wikipedia.org)
  • While the exact definition of a bacterial phylum is debated, a popular definition is that a bacterial phylum is a monophyletic lineage of bacteria whose 16S rRNA genes share a pairwise sequence identity of ~75% or less with those of the members of other bacterial phyla. (wikipedia.org)
  • It was proposed that the suffix "-bacteria" be used for phyla. (wikipedia.org)
  • Most members of domain Bacteria possess FtsZ, but bacteria in genus Prosthecobacter of the phylum Verrucomicrobia form a key exception, possessing tubulin homologs BtubA and BtubB. (edu.sa)
  • Verrucomicrobium spinosum, a member of Phylum Verrucomicrobia of domain Bacteria, has been found to possess a gene for a protein homologous to the cytoskeletal protein FtsZ. (edu.sa)
  • Thus, both bacteria-like FtsZ and eukaryote-like tubulin cytoskeletal homologs occur in different species of the phylum Verrucomicrobia of domain Bacteria, a result with potential major implications for understanding evolution of tubulin-like cytoskeletal proteins and the origin of eukaryote tubulins. (edu.sa)
  • The phylogenetic composition of the Bacteria faecal microbiomes of baleen and toothed whales showed no significant differences at the phylum level. (springer.com)
  • Bacterial gliding is defined as steady movement over a surface, of bacteria that have neither flagella nor pili. (harvard.edu)
  • Flavobacteria , representatives of gliding bacteria from the phylum Bacteroidetes, are amongst the fastest known gliders. (harvard.edu)
  • Because organic substrate preference is conserved at fine taxonomic resolution, and our results indicate that the response to experimental N deposition is widely distributed among root-decaying soil bacteria, accounting for bacterial C-use traits at finer taxonomic resolution may be necessary to better understand soil C dynamics in this ecosystem. (confex.com)
  • A genus of anaerobic, gram-negative bacteria in the family Tannerellaceae and phylum BACTEROIDETES. (bvsalud.org)
  • In 2014, the MetaHIT consortium by bacteria of the genera Lacto- alytical method used: 66 from 16S published an integrated catalogue bacillus , Prevotella , and Sneathia , rDNA sequencing [11] or 57 from of 10 million bacterial genes de- whereas for infants delivered by whole-metagenome sequencing [5]. (who.int)
Taxa3
  • Few highly abundant bacterial genera were identified as key taxa with a high contribution to differences among baleen and toothed whales microbiomes. (springer.com)
  • Independent of treatment, nestling gut microbiomes of both species grouped by brood, sharing high numbers of bacterial taxa with both the nest environment and their mother. (biorxiv.org)
  • An LEfSe analysis showed 18 significantly differentially abundant bacterial taxa in PE, including enriched Bacteroidetes and depleted Verrucomicrobia and Syntergistota at the phylum level and depleted Akkermansia at the genus level, suggesting a role in the pathophysiology of PE. (lu.se)
Archaeal5
  • This is the first study that directly compares the faecal bacterial and archaeal microbiomes of free-ranging baleen and toothed whales which represent the two parvorders of Cetacea which members are fully aquatic large mammals which were evolutionary split millions of years ago. (springer.com)
  • In contrast, the microbial metabolomes, intestinal element and metal profiles, the diversity of bacterial, archaeal and fungal microbial communities were not significantly affected. (frontiersin.org)
  • At both sites, temporal changes of soil carbon dioxide (CO 2 ) emissions, bacterial and archaeal community structures were monitored during crop growing season (126 days). (researchsquare.com)
  • The organic amendments increased CO 2 emissions with increased bacterial and archaeal abundance in the Kabwe site, while no impacts were shown in the Lusaka site. (researchsquare.com)
  • In this study, we assessed CO 2 emissions, litter bag decomposition rates, bacterial and archaeal abundance, and taxonomic diversity under different organic amendments at two different experimental sites in Zambia. (researchsquare.com)
Species11
  • Our results indicate that the skin bacterial communi- offs, but their capacity to spread the pathogen to other frog ties on toads from sites overlapping the B. dendrobati- species remains unclear ( 1 , 2 ). (cdc.gov)
  • The distinct phylogenetic position and phenotypic traits of strain JBKA-6 T distinguish it from all other described species of the phylum ' Bacteroidetes ', and therefore it was concluded that strain JBKA-6 T represents a new member of the phylum ' Bacteroidetes ', and the name Ichthyobacterium seriolicida gen. nov., sp. (microbiologyresearch.org)
  • In 2002, an ad hoc committee for the reevaluation of species definition in bacteriology ( 24 ) advised that all new bacterial species descriptions include an rRNA sequence from the type strain, and in 2001, Bergey's Trust published a revised higher-order taxonomy attempting to reconcile bacterial taxonomy with rRNA-based phylogeny ( 12 , 13 ). (asm.org)
  • Bacterial community structures were affected by wind speed and aerosol species. (aaqr.org)
  • Using DNA sequencing technology, the team mapped areas of microbial DNA from the stool samples in order to identify particular bacterial species. (nutraingredients.com)
  • The reduction in anti-inflammatory bacterial species and therefore diversity in the gut of CFS patients was an observation also seen in those with Crohn's disease and ulcerative colitis. (nutraingredients.com)
  • More than 50 new bacterial species were found in the samples, of which 11 are probably representatives of new genera. (matis.is)
  • Seven bacterial species were cultured from the samples, including one new species of the genus Sediminibacter from the Bacteroidetes class. (matis.is)
  • Roughly 50 novel bacterial species were found of which 11 represent new genera. (matis.is)
  • Species belonging to the autotrophic phylum of Aquificae dominated many samples. (matis.is)
  • A catalogue of 178 reference bacterial birth, and the delivery type is the first core of species has been identified genomes distributed among different factor that has an impact. (who.int)
Microbiota2
  • Therefore, the aim of the present analysis was to estimate the relative proportion of respiratory microbiota at phylum and genus levels among TB cases and healthy controls. (springer.com)
  • We included 25 preeclamptic and 29 healthy third-trimester women for the ITS and 16S sequencing of fungal and bacterial microbiota, respectively. (lu.se)
RRNA gene3
  • Rhizoplane bacterial composition was characterized with 16S rRNA gene sequencing, while bacterial abundance was determined on a subset of trees through flow cytometry. (nature.com)
  • We used high throughput sequencing of the bacterial 16S rRNA gene to assess the influence of experimental N deposition on bacterial communities specifically involved in the decomposition of fine root litter. (confex.com)
  • A total of 1052 16S rRNA gene sequences belonging to 23 bacterial phyla were detected. (matis.is)
Acidobacteria1
Genera1
  • Moreover, Verticillium was correlated in abundances with 5 fungal and 6 bacterial genera. (unboundmedicine.com)
Sequences8
  • Parcubacteria was originally described as a single phylum using fewer than 100 16S rRNA sequences. (wikipedia.org)
  • With a greater diversity of 16S rRNA sequences from uncultured organisms now available, it is estimated it may consist of up to 28 bacterial phyla. (wikipedia.org)
  • We compared bacterial amplicon sequence vari- ants (sequences available on FigShare, https://doi. (cdc.gov)
  • The Ribosomal Database Project (RDP) Classifier, a naìˆve Bayesian classifier, can rapidly and accurately classify bacterial 16S rRNA sequences into the new higher-order taxonomy proposed in Bergey's Taxonomic Outline of the Prokaryotes (2nd ed., release 5.0, Springer-Verlag, New York, NY, 2004). (asm.org)
  • Many commercial kits will reduce host and or bacterial rRNA sequences, and use a variety of approaches. (usda.gov)
  • The same approach can be used to target bacterial rRNA sequences. (usda.gov)
  • This approach can also leave part of the 16s rRNA bacterial sequences untargeted to allow for their use of identification of important bacterial pathogens. (usda.gov)
  • Because bacterial rRNA sequences are more variable among the different phylum, additional iterative approach to deplete bacterial sequences will be used. (usda.gov)
Abundant phyla1
  • The most abundant phyla were Acidobacteriota, Actinobacteriota and Bacteriodota. (usp.br)
Composition6
  • Fungal and bacterial communities in soils had some difference in alpha-diversity, relative abundance, structure and taxonomic composition, but microbial groups showed similarity in the same habitat, despite different sampling sites. (unboundmedicine.com)
  • We describe the bacterial community composition of ten digestive tract sites from more than 200 normal adults enrolled in the Human Microbiome Project, and metagenomically determined metabolic potentials of four representative sites. (biomedcentral.com)
  • Hard and soft faeces generally differ in bacterial composition, particularly in rabbits with less weight. (researchgate.net)
  • Researchers working with Gerhard Rogler of Zurich University Hospital attribute the cause to a changed composition of the bacterial diversity in the intestine. (sciencedaily.com)
  • While the bacterial diversity in the faeces of smokers and non-smokers changed only little over time, giving up smoking resulted in the biggest shift in the composition of the microbial inhabitants of the intestines. (sciencedaily.com)
  • Zhang JY, Lo HC, Yang FL, Liu YF, Wu WM, Chou CC. Plant-based, antioxidant-rich snacks elevate plasma antioxidant ability and alter gut bacterial composition in older adults. (naturalmedicinejournal.com)
Abundance1
  • Taxonomical data of richness and abundance revealed that bacterial communities variate stronger with the season than with altitudinal effects. (usp.br)
Microbiology1
  • Today, rRNA-based analysis remains a central method in microbiology, used not only to explore microbial diversity but also as a day-to-day method for bacterial identification. (asm.org)
Verrucomicrobia1
  • It is therefore of interest to know whether other members of phylum Verrucomicrobia possess FtsZ or tubulin as their FtsZ-tubulin gene family representative. (edu.sa)
Diversity of bacterial1
  • Here, we assessed the diversity of bacterial, fungal and cercozoan communities in landraces and modern varieties of wheat. (uni-koeln.de)
Cyanobacteria2
  • When bacterial nomenclature was controlled under the Botanical Code, the term division was used, but now that bacterial nomenclature (with the exception of cyanobacteria) is controlled under the Bacteriological Code, the term phylum is preferred. (wikipedia.org)
  • Under TC stress, g-C 3 N 4 slowed down the growth of Cyanobacteria to some extent and restored the changes of bacterial community structure caused by TC, and reduced the residual TC in water body, thus eliminating the side effects of TC. (researchsquare.com)
Bacteroidota2
  • Porphyromonas gingivalis is a pathogenic bacterium in the phylum Bacteroidota (formerly Bacteroidetes). (asbmb.org)
  • These lipids are unique to the Bacteroidota, the phylum P. gingivalis belongs to. (asbmb.org)
Molecular Biology1
  • For a researcher armed with the powerful tools of genetics and molecular biology, the simple bacterial cells provide great experimental systems for investigating fundamental functions of a living cell. (lu.se)
Pathogens1
  • Because of the alarming and rising problems with antibiotic resistance among bacterial pathogens, there is an urgent need to rapidly develop new types of antibiotics and other anti-bacterial agents. (lu.se)
Highly abundant1
Strains1
  • As they recently showed in a study in PLoS One , the bacterial strains that also prevail in the intestinal flora of obese persons take the upper hand in people giving up smoking. (sciencedaily.com)
Taxonomy2
  • Given the rich history of the field of bacterial taxonomy and the rapidity of changes therein in modern times, it is often useful to have a historical perspective on how the field has progressed in order to understand references to antiquated definitions or concepts. (wikipedia.org)
  • In some part, this was due to the lack of a consistent, higher-level bacterial classification structure (taxonomy). (asm.org)
Genomes1
  • A comparison of the TF repertoire of S. aureus against 1209 sequenced bacterial genomes was carried out allowing us to identify a core set of orthologous TFs for the Staphylococacceae , and also allowing us to assign potential functions to previously uncharacterized TFs. (biomedcentral.com)
Microbiome2
  • To understand the relationship between our bacterial microbiome and health, it is essential to define the microbiome in the absence of disease. (biomedcentral.com)
  • The bacterial microbiome of the human digestive tract contributes to both health and disease. (biomedcentral.com)
Infection4
  • Given that Neosporin helps prevent bacterial infection of minor cuts, abrasions, burns, and even scrapes, it is generally considered safe to apply Neosporin on your pooch. (mypetneedsthat.com)
  • However, studies show that cleaning the abrasion immediately can have the same effect of faster healing times and the effective prevention of bacterial infection. (mypetneedsthat.com)
  • Additionally, deep wounds already involve blood vessels and other tissues which may require more definitive management than simply protecting these from possible bacterial infection. (mypetneedsthat.com)
  • Actinomycosis is a bacterial infection that spreads by direct extension and, rarely, hematogenously. (medscape.com)
Community structures1
  • The bacterial community structures in the mixed pollutive aerosols and dust were characterized, and the key environmental factors were identified. (aaqr.org)
Communities4
  • The bacterial communities' structure of the samples treated with TC, g-C 3 N 4 or TC/g-C 3 N 4 were distinguishable. (researchsquare.com)
  • Finally, statistical analysis revealed the largest environmental factors affecting the bacterial communities to be wind speed and the SO 2 , SO 4 2- , NO 3 - , PM 10 , NH 4 + , and Ca 2+ concentrations. (aaqr.org)
  • Our data indicate that normal and inflamed skin harbor distinct phageomes and suggest a causative relationship between changing viral and bacterial communities as a driver of skin pathology. (microbial-ecology.net)
  • Analysis of bacterial communities in a municipal duck pond during a phytoplankton bloom and isolation of Anatilimnocola aggregata gen. nov., sp. (bvsalud.org)
Putative1
  • The bacterial homologue, NptA of V. cholerae has 10 putative TMSs. (tcdb.org)
Functionally1
  • One week after weaning the rabbit's intestines are almost functionally mature, although the bacterial diversity can still change. (researchgate.net)
20171
  • As of 2017, approximately 72% of widely recognized bacterial phyla were candidate phyla (i.e. have no cultured representatives). (wikipedia.org)
Abstract1
  • ABSTRACT Optical density is a proxy of total biomass concentration and is commonly used for measuring the growth of bacterial cultures. (microbial-ecology.net)
Prokaryotes2
  • The rank of phylum has been included in the rules of the International Code of Nomenclature of Prokaryotes, using the ending -ota for phylum names that must be based on the name of a genus as its nomenclatural type. (wikipedia.org)
  • Processes like these have evolved from common ancestors of both eukaryotes and prokaryotes, and it becomes increasingly clear that the bacterial versions of these basic cell functions use similar ancestral molecules, for example cytoskeletal proteins, as those used in animal and plant cells. (lu.se)
Antibiotic1
  • One of our projects aims at investigating bacterial cell division as an antibiotic target. (lu.se)
Infections1
  • Whenever we get scrapes, cuts, or abrasions, we tend to always reach for a tube of Neosporin and apply it several times a day for several days to help prevent secondary bacterial infections and aid in the healing process. (mypetneedsthat.com)
Processes2
  • Both FtsZ and tubulin are central to key cell biology processes - bacterial septation and cell division in the case of FtsZ and in the case of tubulins the function of microtubules necessary for mitosis and other key cytoskeleton-dependent processes in eukaryotes. (edu.sa)
  • How the organisms elicit this chronic inflammatory process is thought to involve the release of virulence factors, such as LPS, which are then taken up by immune cells, or through simple diffusion processes where the bacterial lipids passively slip into the host's cells. (asbmb.org)
Intestinal1
  • Bacterial overgrowth in the small intestine is a major risk factor for NSAID-induced severe intestinal injury [ 4 ]. (hindawi.com)
Major1
  • Bacterial pneumonia is a major cause of mechanical ventilation in intensive care units. (mdpi.com)
Samples2
  • Phyla initially identified from environmental samples were detected throughout this population, primarily TM7, SR1, and Synergistetes. (biomedcentral.com)
  • In this study we used culture-dependent and RNA-based pyrosequencing to investigate the bacterial community structure of Masa Agria samples produced in the south west of Colombia. (who.int)