Transcriptional adaptation to nitrate-dependent anabolism by Paracoccusdenitrificans PD1222 was studied. (uea.ac.uk)
Achromobacter2
A reevaluation of the criteria used to classify Alcaligenesdenitrificans Rüger and Tan 1983 and Achromobacter xylosoxidans Yabuuchi and Ohyama 1971 as subspecies of Alcaligenes xylosoxidans and additional evidence provided in recent studies revealed that, consistent with present standards, it is appropriate to consider these two taxa distinct species of the genus Alcaligenes. (microbiologyresearch.org)
Here, the structure of cytochrome c(552) from P. denitrificans with the linker segment that attaches the globular domain to the membrane anchor is presented. (rcsb.org)
The protein sequence and the three-dimensional folding structure for cytochrome c 550 from Micrococcusdenitrificans are reported. (caltech.edu)
This work describes a detailed analysis of proton movements during the O-E step in the catalytic cycle of the cytochrome c oxidase of P. denitrificans. (uni-frankfurt.de)
Bacterium1
The switch from aerobic to anaerobic respiration in the bacterium Paracoccusdenitrificans is orchestrated by the action of three FNR-type transcription regulators FnrP, NNR and NarR, which are sensors for oxygen, nitric oxide and nitrite, respectively. (nih.gov)
Thiobacillus2
Thiobacillus denitrificans is a Gram-negative, obligate chemolithoautotroph. (wikipedia.org)
Comparison of amino acid sequences of polypeptides encoded by mau genes from M. extorquens AM1, P. denitrificans, and Thiobacillus versutus shows that they have considerable similarity. (caltech.edu)
Aerobic1
Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. (embl-heidelberg.de)
Sulfurimonas1
nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. (helmholtz-hzi.de)
Nitrate-dependent1
T. denitrificans is particularly notable for its ability to oxidize sulfur and uranium compounds in a nitrate-dependent manner. (wikipedia.org)
Intermediates1
In order to directly monitor X-ray-derived redox changes in trapped oxidative half-reaction intermediates of Paracoccusdenitrificans methylamine dehydrogenase, a commercially available single-crystal UV/Vis microspectrophotometer was installed on-line at the BioCARS beamline 14-BM-C at the Advanced Photon Source, Argonne, USA. (rcsb.org)
Genome2
The genome of T. denitrificans has been sequenced. (wikipedia.org)
T. denitrificans genome sequence from NCBI. (wikipedia.org)
Periplasmic1
Here we describe the zinc acquisition functions of two zinc SBPs (ZnuA and AztC) and a novel periplasmic metallochaperone (AztD) in Paracoccusdenitrificans. (tdl.org)
Genes1
The mauA, mauD, and mauE genes from Paracoccusdenitrificans and the mauD and mauG genes from Methylophilus methylotrophus W3A1 were able to complement corresponding mutants of M. extorquens AM1, confirming their functional equivalence. (caltech.edu)
Paracoccus8
Paracoccus denitrificans is a model organism for the study of oxidative phosphorylation. (nih.gov)
To elucidate the multiple substrate recognition mechanism, we determined the crystal structures of aromatic amino acid aminotransferase from Paracoccusdenitrificans (pdAroAT): unliganded pdAroAT, pdAroAT in a complex with maleate as an acidic substrate analog, and pdAroAT in a complex with 3-phenylpropionate as an aromatic substrate analog at 2.33 A, 2. (nih.gov)
A novel 11-kDa inhibitory subunit in the F1FO ATP synthase of Paracoccusdenitrificans and related alpha-proteobacteria. (bvsalud.org)
The F(1)F(O) and F(1)- ATPase complexes of Paracoccusdenitrificans were isolated for the first time by ion exchange , gel filtration , and density gradient centrifugation into functional native preparations. (bvsalud.org)
However, researchers at the University of East Anglia (UEA) and the Norwegian University of Life Sciences have found that soil bacteria called Paracoccusdenitrificans actually remove the gas. (zmescience.com)
Structure at 2.7 Å resolution of the Paracoccusdenitrificans two subunit cytochrome c oxidase complexed with an antibody F v fragment. (mpg.de)
The enzyme, which was characterized from the bacterium Paracoccusdenitrificans NCIMB 8944, is highly specific for the L -isomer of erythro -3-hydroxyaspartate. (enzyme-database.org)
Acceptors include c-type cytochromes such as cytochrome c- 550 or cytochrome c- 551 from Paracoccusdenitrificans or Pseudomonas aeruginosa, and small blue copper proteins such as azurin and pseudoazurin. (qmul.ac.uk)
Genome sequence2
T. denitrificans genome sequence from NCBI. (wikipedia.org)
Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134). (dsmz.de)
With the combination of T. denitrificans with siderophores (macromolecules complexing iron and naturally produced by microorganisms), a green extraction method is applied on waterlogged wood (oak and pine species), naturally or artificially contaminated with iron and sulfur. (unine.ch)
Subunit1
The 11-kDa protein , but not the epsilon subunit, inhibited the F(1)F(O) and F(1)- ATPase activities of P. denitrificans. (bvsalud.org)
BN-PAGE followed by 2D- SDS-PAGE confirmed the presence of this 11-kDa protein bound to the native F(1)F(O)- ATP synthase of P. denitrificans, as it was observed after being isolated. (bvsalud.org)
Sulfur1
T. denitrificans is particularly notable for its ability to oxidize sulfur and uranium compounds in a nitrate-dependent manner. (wikipedia.org)
Protein1
Taken together, the data unveil a novel inhibitory mechanism exerted by this 11-kDa protein on the F(1)F(O)- ATPase nanomotor of P. denitrificans and closely related alpha- proteobacteria . (bvsalud.org)