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  • sequences
  • TrEMBL was developed to handle the increasing amounts of data being generated by large-scale genomic projects, allowing scientists quicker access to new protein sequences before they were hand-curated and entered into SWISS-PROT. (eurekalert.org)
  • PIR is a joint effort between Georgetown University Medical Center and the National Biomedical Research Foundation in Washington, D.C. PIR was established in 1984 and resulted from the work of Dr. Margaret Dayhoff, Ph.D. Her Atlas of Protein Sequence and Structure, published from 1965-1978, was the first comprehensive collection of protein sequences. (eurekalert.org)
  • Automatic Quote will be generated only if sequences qualify for the Guaranteed service, as determined by our proprietary sequence analysis platform, failing which, our Technical Account Manager will contact you with a custom protein production quote. (genscript.com)
  • In this part of the exercise, we shall use Virtual Ribosome - a software that provides a series of functions to translate DNA to protein sequences. (dtu.dk)
  • Note, that the output shows both the DNA, and protein sequences as well as information on START and STOP codons. (dtu.dk)
  • The data may be either a list of database accession numbers, NCBI gi numbers, or sequences in FASTA format. (nih.gov)
  • No BLAST database contains all the sequences at NCBI. (nih.gov)
  • The search will be restricted to the sequences in the database that correspond to your subset. (nih.gov)
  • 1) Human mitochondrial DNA (mtDNA) sequences of 83 different ethnic groups were obtained from the Human Mitochondrial Genome Database and presented through MitoMorphy. (nist.gov)
  • Current web tools include a text-based search, a function for assessing motif similarity between user-entered data and database PWMs, and a function for locating putative binding sites along user-entered nucleotide sequences. (harvard.edu)
  • Bioinformatics
  • Established in 1986 by Amos Bairoch, Ph.D., now a group leader of SWISS-PROT at the Swiss Institute of Bioinformatics (SIB) in Geneva, SWISS-PROT's hands-on, high-quality information processes could not cope with the rising tide of new information coming out of high-throughput DNA sequencing, which has generated information about hundreds of thousands of new proteins from all species being studied, including human. (eurekalert.org)
  • annotation
  • p>An evidence describes the source of an annotation, e.g. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc. (uniprot.org)
  • Pathway
  • Caspi R, Foerster H, Fulcher CA, Kaipa P et al (2008) The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. (springer.com)
  • data
  • The only 3D database I know of is the protein data bank (PDB). (bio.net)
  • BETHESDA, Md., Oct. 23, 2002 - Throwing its financial support behind the concept of a centralized repository for protein data, the National Human Genome Research Institute (NHGRI), in cooperation with five other institutes and centers at the National Institutes of Health (NIH), has awarded a three-year, $15-million grant to combine three of the world's current protein sequence databases into a single global resource. (eurekalert.org)
  • Gene-Finder with data protein data base analysis V.1. (bio.net)
  • IntAct captures protein interaction data from peer-reviewed literature and direct user submissions. (openhelix.com)
  • The UniPROBE (Universal PBM Resource for Oligonucleotide Binding Evaluation) database hosts data generated by universal protein binding microarray (PBM) technology on the in vitro DNA-binding specificities of proteins. (harvard.edu)
  • This initial release of the UniPROBE database provides a centralized resource for accessing comprehensive PBM data on the preferences of proteins for all possible sequence variants ('words') of length k ('k-mers'), as well as position weight matrix (PWM) and graphical sequence logo representations of the k-mer data. (harvard.edu)
  • In total, the database hosts DNA-binding data for over 175 nonredundant proteins from a diverse collection of organisms, including the prokaryote Vibrio harveyi, the eukaryotic malarial parasite Plasmodium falciparum, the parasitic Apicomplexan Cryptosporidium parvum, the yeast Saccharomyces cerevisiae, the worm Caenorhabditis elegans, mouse and human. (harvard.edu)
  • Proteins structures are taken from the Protein Data Bank . (wikipedia.org)
  • The database also does not include lower resolution structures with only main chain atoms provided by the Protein Data Bank . (wikipedia.org)
  • 1994
  • Corbett JM, Wheeler CH, Baker CS, Yacoub MH, Dunn MJ: The human myocardial two-dimensional gel protein database: update 1994. (hmdb.ca)
  • human
  • The action is aimed at ensuring that researchers around the world will have free, unrestricted access to a comprehensive and non-redundant source of protein information, as well as creating a powerful tool for the study of human disease. (eurekalert.org)
  • Please upgrade your browser to a newer version to get the best experience on Human Metabolome Database. (hmdb.ca)
  • Engelkamp D, Schafer BW, Erne P, Heizmann CW: S100 alpha, CAPL, and CACY: molecular cloning and expression analysis of three calcium-binding proteins from human heart. (hmdb.ca)