• The database has been constantly growing and in the past two years between 2008 and 2010 it has exploded to contain over two and a half million protein IDs and eleven and a half million peptides. (wikibooks.org)
  • 2. The conductive CNT-biosensor according to claim 1 , wherein the bioreceptor is an enzymatic substrate, a ligand, an amino acid, a peptides, a nucleic acid, a lipid, a cofactor, or a carbohydrate. (google.com)
  • This can happen when two amino acids have different properties even if they have similar shapes-as is the case with Valine and Threonine . (wikipedia.org)
  • Although not all synthetases have a domain with the sole purpose of editing, they make up for it by having specific binding and activation of their affiliated amino acids. (wikipedia.org)
  • The amino acids are attached to the hydroxyl (-OH) group of the adenosine via the carboxyl (-COOH) group. (wikipedia.org)
  • All recognized mutations for AD are associated with increased deposition of amyloid beta (Abeta), a peptide fragment comprising 39-43 amino acids that derives from the catabolism of the amyloid precursor protein (APP) molecule. (medscape.com)
  • The dagLogo package implements iceLogo in R to visualize differential amino acid sequence pattern, and test and visualize significant amino acid group patterns by classifying the amino acids into groups according to charge, chemistry and hydrophobicity, etc. (umassmed.edu)
  • The genome of the lactic acid bacterium Lactobacillus plantarum strain WCFS1 has been sequenced ( 25 ). (asm.org)
  • It has a size of 3.3 M, which is among the largest genome sizes known for lactic acid bacteria. (asm.org)
  • The nucleic acids and ligands database (NALD) is concerned with the identification of ligands (drugs) that bind nucleic acids (NA) and provide users with sets of specific information in relation to the binding existing between both molecules. (springer.com)
  • NALD provides online access to these types of information while it focuses on ligands that bind nucleic acids with implications on diseases of high prevalence in Africa and in particular in Algeria and the Southern African Development Community (SADC) region such as HIV/AIDS, cancer, hepatitis, malaria and tuberculosis. (springer.com)
  • Rachedi A., Madida K. (2013) NALD: Nucleic Acids and Ligands Database. (springer.com)
  • The K D values of CB1 ligands in the ChEMBL database are predicted by QSAR random forest (RF) modeling for the CB1 receptor and known off-targets (TRPV1, mGlu5, 5-HT1a). (springer.com)
  • The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models. (rcsb.org)
  • Structural, mechanical and/or cell function indices for a plurality of tissue populations are determined, and then stored in a database. (google.co.uk)
  • In particular, a user measures parameters (e.g., structural, mechanical and/or cell function indices) associated with the user's tissue specimens and then compares this information to corresponding parameters for normal tissue in the database in order to classify the user's tissue specimens as either normal or abnormal. (google.co.uk)
  • The database offers data integration in the form of links to the PDB, DrugBank, and other resources such as UniProt and PubMed databases. (springer.com)
  • The Entrez system provides search and retrieval operations for most of these data from 39 distinct databases. (nih.gov)
  • A new portable drawing tool for genomic features is also now available, as well as new ways to download the data, including web services, files for several relational database manager systems and text files including BioPAX format. (oxfordjournals.org)
  • The Immune Epitope Database contains data related to antibody and T cell epitopes for humans, non-human primates, rodents, and other animal species. (rcsb.org)
  • Existing DBMS, whose major targets are business applications, is not suited to managing these biological data because storing such large data to DBMS is time-consuming, and also current database queries cannot accommodate various types of bioinformatics tools written in various programming languages. (springer.com)
  • A database of phylogenetic trees and data matrices published in the primary systematic literature. (tolweb.org)
  • An online biotic database containing images and data for taxa used in analyses of Tropical American biodiversity over the past 25 million years. (tolweb.org)
  • The database is unique in that, instead of just displaying raw data, it offers visitors a chance to see how the different metabolites correlate to each other graphically, paving the way for further studies to identify how these metabolites and proteins relate to each other. (eurekalert.org)
  • Similar databases cover other countries or regions, such as the United Kingdom and the Republic of Ireland, but some have limitations due to inconsistent data collection or small sample size. (eurekalert.org)
  • UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. (vldb.org)
  • CS 6372 Biological Database Systems and Datamining (3 semester hours) This course emphasizes the concepts of database, data warehouse, data mining and their applications in biological science. (utdallas.edu)
  • Data growth and its impact on the SCOP database: new developments. (rcsb.org)
  • Mass Spectrometry databases are a unique challenge for maintaining the vast quantity of data generated from an MS experiment due to both size and complexity issues. (wikibooks.org)
  • Although significant progress has been made in the standardization of these data types, there is still significant incongruence from one spectral database to another. (wikibooks.org)
  • Begun in 1970, the NIST standard reference database is a verbose collection of spectral data in a common data type, requiring both a minimal amount of data regarding the experiment as well as a standard format for the presentation of spectral data from a wide variety of MS applications. (wikibooks.org)
  • This article seeks to highlight the recent advances and modifications in the Proteomics Identifications Database and to point out the vital role it plays in the collection and storage of mass spectrometry (MS) data. (wikibooks.org)
  • The data found in the database comes from a vast range of experiments and is stored in a format that allows for simple and complex querying in a common format. (wikibooks.org)
  • A database that is centralized, public, and standards compliant and contains a variety of proteomics data. (wikibooks.org)
  • We generated a database for the Mycobacterium tuberculosis complex (using three strains of Mycobacterium bovis and five of M. tuberculosis ), and analyzed data collected from two laboratory strains and two clinical isolates of M. tuberculosis . (mcponline.org)
  • We have developed an enantioselective synthesis of these bicyclic oxazolidinones utilizing a key o-iodoxybenzoic acid mediated cyclization. (rcsb.org)
  • CS 6360 Database Design (3 semester hours) Methods, principles, and concepts that are relevant to the practice of database software design. (utdallas.edu)
  • Methods to find driver mutations are usually classified into two main categories: mutation frequency-based analysis and bioinformatic predictions of functional effects of amino acid changes. (genetics.org)
  • Methods for nucleic acid preparation, random primed PCR amplification, and labeling were optimized to allow the sensitivity required for application with nucleic acid extracted from clinical materials and cultured isolates. (cdc.gov)
  • CBS Databases, del Fungal Biodiversity Center de Utrecht, contiene colecciones de organismos cultivables (de microorganismos, plantas, animales y células humanas), piezas replicables de estos organismos, células y tejidos, así como bases de datos que contienen información molecular, fisiológica y estructural relevante a estas colecciones. (pinterest.com)
  • Gene therapy specifically is a form of treatment which is the remedial transmission of nucleic acid instead of a drug into a patient's cell in order to treat their disease. (southlaketimes.com)
  • IntAct provides an open source database and toolkit for the storage, presentation and analysis of protein interactions. (psu.edu)
  • Minimotif miner 2nd release: a database and web system for motif search. (vldb.org)
  • The eBLOCKs database is freely available on the World Wide Web at http//motif.stanford.edu/eblocks/ to all users for online usage. (bvsalud.org)
  • The Mu.Ta.Lig (Multi-Target Ligand) Chemotheca database aims to offer such opportunities by facilitating information exchange among researchers worldwide. (frontiersin.org)
  • Researchers in Japan have created a database of metabolites from blood samples collected from over 5,000 Japanese volunteers, making it freely available online as a valuable resource for researchers around the world. (eurekalert.org)
  • The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. (vldb.org)
  • This transcriptome database of acutely isolated purified astrocytes, neurons, and oligodendrocytes provides a resource to the neuroscience community by providing improved cell-type-specific markers and for better understanding of neural development, function, and disease. (jneurosci.org)
  • An aminoacyl-tRNA synthetase ( aaRS or ARS ), also called tRNA-ligase, is an enzyme that attaches the appropriate amino acid onto its tRNA . (wikipedia.org)