• After rRNA sequencing, the bacteria was characterized as a Shewanella , and the species was named Shewanella oneidensis MR-1 ("manganese reducer") after the lake in which it was discovered (Slonczewski et al, 2011). (kenyon.edu)
  • Shewanella oneidensis grows more robust and confluent biofilms in low-nutrient media. (kenyon.edu)
  • 2011). Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. (tcdb.org)
  • Shewanella oneidensis MR-1 is a type of bacteria that generates electricity, applied in bacterial fuel cells, environmental pollution treatment, reduction of metal nanoparticles, and biosynthesis. (nature.com)
  • The roles of DmsEFAB and MtrCAB in extracellular reduction of iodate by Shewanella oneidensis MR-1 with lactate as the sole electron donor. (cug.edu.cn)
  • 7] Hu Y, Wu Y, Mukherjee M, Cao B. Near-infrared light responsive c-di-GMP module-based AND logic gate in Shewanella oneidensis. (cug.edu.cn)
  • 9] Hu Y, Yang Y, Katz E, Song H (2015) Programming the quorum sensing-based AND gate in Shewanella oneidensis for logic gated-microbial fuel cells. (cug.edu.cn)
  • 10] Yang Y, Ding Y, Hu Y, Cao B, Rice S, Kjelleberg S, Song H. Enhancing bidirectional electron transfer of Shewanella oneidensis by a synthetic flavin pathway. (cug.edu.cn)
  • 12] Lin T, Bai X, Hu Y, Li B, Yuan Y, Song H, Yang Y, Wang J (2017) Synthetic Saccharomyces cerevisiae-Shewanella oneidensis consortium enables glucose‐fed high‐performance microbial fuel cell. (cug.edu.cn)
  • Growth with high planktonic biomass in Shewanella oneidensis fuel cells. (umass.edu)
  • S. violacea is a member of Group 1 Shewanella due to specific genetic adaptations that have enabled the bacteria to thrive in extremely low temperatures and high pressures. (wikipedia.org)
  • Shewanella was originally identified in 1931 as one of multiple species of bacteria growing on putrid butter (Derby et al. (kenyon.edu)
  • The new system mimics that of one found in some bacteria, like Shewanella . (msu.edu)
  • For more information, see the paper from 2019 on GapMind for amino acid biosynthesis, the paper from 2022 on GapMind for carbon sources, or view the source code , or see changes to Amino acid biosynthesis since the publication. (lbl.gov)
  • Biofilm formation by Shewanella oniedensis MR-1 on a glass surface. (kenyon.edu)
  • 4] Mukherjee M, Zaiden N, Teng AMR, Hu Y, Cao B. Shewanella biofilm development and engineering for environmental and bioenergy applications, Current Opinion in Chemical Biology, 2020. (cug.edu.cn)
  • Shewanella cells labeled with green fluorescence protein (GFP) were visualized using confocal laser-scanning microscopy. (kenyon.edu)
  • Ng CK , Mohanty A , Cao B* (2015) Biofilms in Bionanotechnology: Opportunities and Challenges, in Bio-nanoparticles: Biosynthesis and Sustainable Biotechnological Implications . (bcaolab.org)
  • The two key aspects in the biosynthesis of nanoparticles are NADH (Nicotinamide Adenine Dinucleotide) and NADH-dependent nitrate reductase. (ijpsr.com)
  • This MR-1 species was the first shewanella to genome to be sequenced, and thus it has become a model system for the study of the genus (Gralnick et al. (kenyon.edu)
  • 2011). PigS and PigP regulate prodigiosin biosynthesis in Serratia via differential control of divergent operons, which include predicted transporters of sulfur-containing molecules. (tcdb.org)
  • Bacterial adaptation to high pressure: a respiratory system in the deep-sea bacterium Shewanella violacea DSS12. (wikipedia.org)
  • 8] Yang Y, Wu Y, Hu Y (Co-first Author), Wang H, Guo L, Fredrickson JK, Cao B. Harnessing the periplasm of bacterial cells to develop biocatalysts for the biosynthesis of highly pure chemicals. (cug.edu.cn)
  • Group 1 Shewanella species are mostly extremophiles while Group 2 Shewanella species are mostly mesophiles. (wikipedia.org)
  • The exact function of the unusual lipid composition found in S. violacea and other members of Group 1 Shewanella species is not yet fully understood. (wikipedia.org)
  • Unlike many other Shewanella species, S. violacea has very few terminal reductases for anaerobic respiration, c-type cytocromes and no Fe(III) reduction outer membrane proteins involved in respiration. (wikipedia.org)
  • 1999). Since the modern characterization Shewanella in 1988, DNA:DNA hybridization and 16S rRNA sequencing has been used to identify more than 40 distinct species. (kenyon.edu)
  • High amounts of reduced manganese in the lake led to the discovery of the Shewanella model species: Shewanella oniedensis MR-1, which transfers electrons to insoluble oxidized manganese as a form of respiration. (kenyon.edu)
  • Upon experimentation,they discovered a species of Shewanella that respires by transferring electrons to Mn 4+ . (kenyon.edu)
  • For the typical bacterium that can make all 20 amino acids, there are 1-2 gaps in amino acid biosynthesis pathways. (lbl.gov)
  • Shewanella violacea is a member of the Shewanella genus. (wikipedia.org)
  • Recent evaluation of the Shewanella phylogeny has led to a division of this genus into two categories: Group 1 and Group 2. (wikipedia.org)
  • The genus Shewanella consists of gram-negative proteobacteria that are typically rod shaped, 2-3 μm in length and 0.4-0.7 μm in diameter (Fig 1). (kenyon.edu)
  • 2007). In 1985, 5S rRNA sequencing was used support an entirely new name for the genus, Shewanella. (kenyon.edu)
  • In contrast to Escherichia coli , the regulatory systems that control transcription of genes responsible for different respiratory processes are poorly understood in environmentally relevant Shewanella spp. (biomedcentral.com)
  • Shewanella violacea has an abnormally high percent of polyunsaturated fatty acids (PUFA) integrated into its phospholipids. (wikipedia.org)
  • In Shewanella violacea 14% of its fatty acids are eicosapentaenoic acids (EPA) which are a specific type of polyunsaturated fatty acid also known as 20:5ω3. (wikipedia.org)
  • Correlation between phylogenetic structure and function: examples from deep-sea Shewanella. (wikipedia.org)
  • Isolation and characterization of Shewanella alga from human clinical specimens and emendation of the description of S. alga Simidu et al. (nih.gov)
  • For more information, see the paper from 2019 on GapMind for amino acid biosynthesis, the paper from 2022 on GapMind for carbon sources, or view the source code , or see changes to Amino acid biosynthesis since the publication. (lbl.gov)
  • For more information, see the paper from 2019 on GapMind for amino acid biosynthesis, the paper from 2022 on GapMind for carbon sources, or view the source code . (lbl.gov)
  • For the typical bacterium that can make all 20 amino acids, there are 1-2 gaps in amino acid biosynthesis pathways. (lbl.gov)
  • Shewanella violacea DSS12 (S. violacea) is a gram-negative bacterium located in marine sediment in the Ryukyu Trench at a depth of 5,110m. (wikipedia.org)
  • Shewanella violacea is a motile rod-shaped bacterium with flagella. (wikipedia.org)
  • Bacterial adaptation to high pressure: a respiratory system in the deep-sea bacterium Shewanella violacea DSS12. (wikipedia.org)
  • The Citric acid cycle study combines topics in areas such as Biosynthesis, Isoleucine, Catabolite repression, Carbon fixation and NAD+ kinase. (research.com)
  • Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens. (umass.edu)
  • Genetic and phenotypic studies on the strains biochemically identified as Shewanella putrefaciens, which had a G+C content ranging from 52 to 54 mol% were conducted. (nih.gov)
  • Surprisingly, DNA homology experiments revealed that all these strains are genetically related to Shewanella alga (which was reported to produce tetrodotoxin), not to the type strain of S. putrefaciens. (nih.gov)
  • Shewanella violacea has an abnormally high percent of polyunsaturated fatty acids (PUFA) integrated into its phospholipids. (wikipedia.org)
  • In Shewanella violacea 14% of its fatty acids are eicosapentaenoic acids (EPA) which are a specific type of polyunsaturated fatty acid also known as 20:5ω3. (wikipedia.org)
  • With their unique structural and functional characteristics, they are distinguished by their role in regulating the architecture, dynamics, phase transition and permeability of membranes, modulating the behavior of membrane-bound proteins, controlling the expression of certain genes affecting fatty acids biosynthesis and cholesterol transport in the body. (omicsonline.org)
  • Blocks 2 consecutive steps in the biosynthesis of nucleic acids and proteins essential to many bacteria. (medscape.com)
  • Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. (wikipedia.org)
  • Initial Step of Selenite Reduction via Thioredoxin for Bacterial Selenoprotein Biosynthesis. (ritsumei.ac.jp)
  • Jointly, DAB1 was deducted because anti-inflammatory and also cathepsin D curbing agent and could be utilized in the substance advancement towards individual diseases.Essential fatty acid Desaturase Only two (FAD2), an important enzyme in the fatty acid biosynthesis process, is actually mixed up in the desaturation and alteration associated with oleic acid in order to linoleic acid. (iwp-2inhibitor.com)
  • Hence, introduction of DH domains controlling the dehydration process of fatty acid biosynthesis in plants might offer a new strategy to increase oil production in oilseed plants. (biomedcentral.com)
  • In this work, we show an attractive new biosynthesis system to break these limitations. (researcher-app.com)
  • Recent evaluation of the Shewanella phylogeny has led to a division of this genus into two categories: Group 1 and Group 2. (wikipedia.org)
  • 220. Structural and functional analysis of an l-serine O-phosphate decarboxylase involved in norcobamide biosynthesis. (wisc.edu)
  • They were further characterized as Shewanella algae MTCC 12715 and Bacillus amyloliquefaciens MTCC 12716, based on integrated phenotypic and genotypic analysis. (springer.com)