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FungiMitosporic FungiBiologySystems BiologyAscomycotaMolecular BiologyDevelopmental BiologyBasidiomycotaSynthetic BiologyComputational BiologySpores, FungalDNA, FungalFungal ProteinsPenicilliumMyceliumHypocrealesPhylogenyMolecular Sequence DataFusariumPlant DiseasesMycosesAspergillusBeauveriaMagnaportheHyphaeSymbiosisGlomeromycotaXylarialesEndophytesGene Expression Regulation, FungalTrichodermaGenome, FungalAntifungal AgentsAgaricalesMetarhiziumGenes, FungalChytridiomycotaSequence Analysis, DNACladosporiumDNA, Ribosomal SpacerAspergillus nidulansAlternariaAmino Acid SequenceModels, BiologicalFruiting Bodies, FungalAir MicrobiologyPlantsUstilagoMycotoxinsPolyporaceaeMucorSpecies SpecificityAspergillus fumigatusPlant RootsMucoralesCandida albicansSoil MicrobiologyBase SequencePest Control, BiologicalColletotrichumDermatomycosesAspergillus nigerEvolution, MolecularBiological EvolutionPaecilomycesBacteriaLaccaseGene Expression ProfilingGenomicsRhizopusSequence AlignmentLigninMortierellaParacoccidioidesCryptococcus neoformansSordarialesWoodSignal TransductionHistoplasmaMycologyRhizoctoniaPhanerochaeteBotrytisMutationCulture MediaPolyporalesSequence Homology, Amino AcidPlant LeavesChaetomiumNeurospora crassaAspergillus flavusOryza sativaLaccariaHost-Pathogen InteractionsAcremoniumSporothrixRNA, FungalExophialaPhenotypeTrees
GenesSubunitSpeciesBacteriaRRNAMicroorganismsNuclear ribosomal internalMycologySequencesAscomycotaFusariumMitochondrial ribosomalKingdom FungiAnaerobic fungiEndophytic fungiPathogenic fungiEctomycorrhizal fungiMolecular BiologyEcologyPhylogenyFilamentous fungiDiversityPhylogeneticAmplification2017ProtistsGeneraSystematicsFungal cellIntegrative Structural BiologyTaxonomyClosely relatedGenome2018GenusGenomicPlantsEvolutionDomandeVariationPlantSequencingSystematicResearchers2021AssaysPathogens
Genes9
  • They have developed primers (small pieces of DNA) to amplify ribosomal genes that are conserved across species for use in DNA barcoding. (berkeley.edu)
  • Furthermore, ecological preferences of Chaetothyriales were analysed, in conjuncture with the order-level phylogeny based on conserved ribosomal genes. (nau.edu)
  • The MAT (MAting Type) locus and other sex-related genes were recognized in all 23 black fungi. (nau.edu)
  • The genomic synteny of the MAT-locus flanking genes (SLA2-APN2-COX13) is not conserved in black fungi as is commonly observed in Eurotiomycetes, indicating a unique genomic context for MAT in those species. (nau.edu)
  • The heterokaryon (het) genes expansion associated with the low selective pressure at the MAT-locus suggests that a parasexual cycle may play an important role in generating diversity among those fungi. (nau.edu)
  • For bacteria, the assays target the 16S rRNA gene, and for fungi, they target ribosomal RNA genes. (qiagen.com)
  • The ribosomal genes. (gomp.it)
  • These analyses have also helped identify genes that were differentially expressed in DED fungi grown under defined experimental conditions. (sisef.it)
  • Because of the high genetic diversity in viruses and the lack of ribosomal genes, it is not possible to create primers that span the entire Nucleocytoviricota phylum or even at the family level. (umass.edu)
Subunit6
  • These are the small subunit (SSU) and large subunit (LSU) ribosomal RNA gene regions. (dannyhaelewaters.com)
  • Moncalvo J.-M., Lutzoni F.M., Rehner S.A., Johnson J., Vilgalys R, 2000, Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. (units.it)
  • All of the sequenced genomes have a group I intron in the large ribosomal subunit RNA gene, suggesting that this intron is fixed in these species. (umd.edu)
  • In this study, culture-based methods and small subunit ribosomal RNA gene clone library approach were used to characterize microbial communities in MRF bulk fluid and associated biofilm samples collected from fluid systems in an automobile engine plant. (cdc.gov)
  • In the late 20th century, the pioneering work of Carl Woese and others compared sequences of small-subunit ribosomal RNA (SSU rRNA), which resulted in a more fundamental way to group organisms on Earth. (unizin.org)
  • These morphospecies were identified using Sanger sequencing of the ITS1, 5.8S ribosomal subunit, and ITS2 regions. (confex.com)
Species13
  • Critical interpretations of fossil fungi combined with phylogenies of living species have the potential to reveal patterns of character evolution and to inform estimates of the geological timing of fungal radiations. (ubc.ca)
  • Plant Species Biology, 1-16. (uwlax.edu)
  • Since the publication of Nova Plantarum Genera by Pier Antonio Micheli in 1737, marking the start of modern mycology, researchers have described approximately 148,000 species of fungi. (dannyhaelewaters.com)
  • Intraspecific ITS variability in the Kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. (dannyhaelewaters.com)
  • PCR tests using conserved 16S ribosomal RNA gene and 28S-ITS PCR regions of bacteria and fungi, respectively have low sensitivity of genus/species level. (quickbiology.com)
  • Dahlberg A., Jonsson L., Nylund J.E., Species diversity and distribution of biomass above and below ground among ectomycorrhizal fungi in an old growth Norway spruce forest in South Sweden, Can. (afs-journal.org)
  • Henrion B., Chevalier G., Martin F., Typing truffle species by PCR amplification of the ribosomal DNA spacers, Mycol. (afs-journal.org)
  • To understand their biology and divergent niche occupation, we sequenced and annotated a set of 23 genomes of main the human opportunists within the Chaetothyriales as well as related environmental species. (nau.edu)
  • 18S ribosomal RNA (rRNA) terminal restriction fragment length polymorphism was used to compare the abundance of each AMF species between genotypes. (guildhe.ac.uk)
  • When Carl Linnaeus introduced the rank-based system of nomenclature into biology in 1735, the highest rank was given the name 'kingdom' and was followed by four other main or principal ranks: class, order, genus and species. (scientificlib.com)
  • The phylogenetic position of Malmidea , a new genus for the Lecidea piperis - and Lecanora granifera -groups (Lecanorales, Malmideaceae), inferred from nuclear and mitochondrial ribosomal DNA sequences, with special reference to Thai species. (wikimedia.org)
  • One hundred new species of lichenized fungi: a signature of undiscovered global diversity. (wikimedia.org)
  • Fungal isolates have been classified into the following groups: Moniliaceae (nonpigmented filamentary fungi, including Fusarium and Aspergillus species), Dematiaceae (pigmented filamentary fungi, including Curvularia and Lasiodiplodia species), and yeasts (including Candida species). (medscape.com)
Bacteria6
  • I specifically study molecular ecology of tripartite associations among plant, fungi and bacteria through observational as well as experimental studies. (uwlax.edu)
  • The domain Bacteria comprises all organisms in the kingdom Bacteria, the domain Archaea comprises the rest of the prokaryotes, and the domain Eukarya comprises all eukaryotes-including organisms in the kingdoms Animalia, Plantae, Fungi, and Protista. (unizin.org)
  • Supercharging SIP in the Fungal Hyphosphere Applying high-throughput stable isotope probing to the study of a particular fungi, researchers identified novel interactions between bacteria and the fungi. (doe.gov)
  • Agricultural Inoculants 0 domande Beneficial microorganisms (bacteria or fungi) encapsulated in carrier material and applied to the environment for remediation and enhancement of agricultural productivity. (lookformedical.com)
  • In the experimental warming plots the relative amount of bacteria to fungi has increased. (umass.edu)
  • Microorganisms capable of catabolizing lignin-derived ar- carbohydrate and protein components of the organic matter omatics are essentially fungi and bacteria (Bugg et al. (lu.se)
RRNA1
  • Some of the enzymes which generate aromatic radicals that break down most prominent bacterial strains found were isolated and tax- the complex linkages present in lignin to compounds of lower onomically identified using 16S ribosomal RNA (rRNA) se- molecular weight. (lu.se)
Microorganisms2
  • AbstractSexual reproduction is a key process influencing the evolution and adaptation of animals, plants and many eukaryotic microorganisms, such as fungi. (exeter.ac.uk)
  • The results show that the discolored wood was inhabited by a combination of microorganisms, more than 90% of which belong to Ascomycota fungi at the phylum level. (degruyter.com)
Nuclear ribosomal internal3
  • The nuclear ribosomal internal transcribed spacer region (ITS) was amplified with primers ITS1 and ITS4 (4) and partly sequenced (GenBank accession No. FR667687). (wallonie.be)
  • 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. (dannyhaelewaters.com)
  • This study detected fungal diversity in discolored Mongolian pine for the first time by the MiSeq approach, focusing on the nuclear ribosomal internal transcribed spacer-1 (ITS1). (degruyter.com)
Mycology1
Sequences2
  • 1998. Support, Ribosomal Sequences, And The Phylogeny Of The Eukaryotes. (gwu.edu)
  • Their mitochondrial genomic sequences may hold vital clues into the mechanisms of their evolution, population genetics, and biology, yet only a handful of these genomes have been fully sequenced and annotated. (umd.edu)
Ascomycota1
Fusarium2
  • Root rot is a significant underground disease in date palms ( Phoenix dactylifera L.) caused by pathogenic soil-borne fungus Fusarium oxysporum . (pakps.com)
  • One type of fungus that can infect the cornea is Fusarium . (medscape.com)
Mitochondrial ribosomal1
  • 287 Cytosolic and mitochondrial ribosomal proteins mediate the locust phase transition via divergence of translational profiles. (thelatestscience.com)
Kingdom Fungi5
  • Blastocladiomycota is one of the currently recognized phyla within the kingdom Fungi. (wikipedia.org)
  • This early diverging branch of kingdom Fungi is the first to exhibit alternation of generations. (wikipedia.org)
  • However, this only represents about 2.5-6.7% of the estimated diversity in the Kingdom Fungi. (dannyhaelewaters.com)
  • Kingdom Fungi, definition. (gomp.it)
  • Phylogeny and characteristics of phyla and subphyla the Kingdom Fungi. (gomp.it)
Anaerobic fungi1
Endophytic fungi2
  • As with nearly all plants studied, Phragmites serves as a host to endophytic fungi that asymptomatically colonize its various tissues and organs. (confex.com)
  • Present study focuses on diversity and distribution analysis of endophytic fungi associated with different tissues of the Monarda citriodora Cerv. (biomedcentral.com)
Pathogenic fungi1
  • As a PhD student with Alex Brand in the Aberdeen Fungal Group and a post-doc with Rob Arkowitz in Nice, I generated novel techniques via cross-faculty approaches to define previously-impossible-to-measure live-cell applied-forces and fluorescent protein dynamics within invasive pathogenic fungi against tissue-soft substrates. (exeter.ac.uk)
Ectomycorrhizal fungi5
  • 2007. Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland. (dannyhaelewaters.com)
  • Gardes M., Bruns T., Community structure of ectomycorrhizal fungi in a Pinus muricata forest: above- and below-ground views, Can. (afs-journal.org)
  • Jonsson L., Dahlberg A., Nilsson M.-C., Kårén O., Zackrisson O., Continuity of ectomycorrhizal fungi in self-regenerating boreal Pinus sylvestris forests studied by comparing mycobiont diversity on seedlings and mature trees, New Phytol. (afs-journal.org)
  • Rincón A., Alvarez I.F., Pera J., Ectomycorrhizal fungi of Pinus pinea L. in northern Spain, Mycorrhiza 8 (1999) 271-276. (afs-journal.org)
  • Taylor D.L., Bruns T.D., Community structure of ectomycorrhizal fungi in a Pinus muricata forest: minimal overlap between the mature forest and resistant propagules communities, Mol. (afs-journal.org)
Molecular Biology6
Ecology3
  • I recall discussing the science in relation to water relations of fungi, especially fungi to control pests and ecology, and his work on fungal growth which was so renowned in the 1970s. (britmycolsoc.org.uk)
  • Gazis R., Skaltsas D., Chaverri P. (2014) Novel endophytic lineages of Tolypocladium provide new insights into the ecology and evolution of Cordyceps-like fungi. (jats-truffles.org)
  • Biology and Ecology: the fungal cell. (gomp.it)
Phylogeny1
  • In Chapter 2, I present a comprehensive phylogeny of thyriothecial Dothideomycetes based on 4251 nucelotides for 320 taxa, contributing new nuclear rDNA sequence data for 14 thyriothecial fungi. (ubc.ca)
Filamentous fungi3
  • His insights provided the conceptual framework by which we still understand mycelial development and the cell cycle of filamentous fungi. (britmycolsoc.org.uk)
  • The clarity of his thinking and argument provided a lifelong basis to explain how filamentous fungi evolved to be one of the most successful groups of eukaryotic organisms on the planet. (britmycolsoc.org.uk)
  • Of the 70 different fungi that have been implicated as causing fungal keratitis, the 2 medically important groups responsible for corneal infection are yeast and filamentous fungi (septate and nonseptate). (medscape.com)
Diversity2
  • The aim of the course is to provide students with the information needed to understand the biology and diversity of the Fungal Kingdom, which remains one of the main gaps in a biologist's knowledge. (gomp.it)
  • The diversity of stain fungi is important if wood is inhabited with various fungi, and the discoloration mechanism will be better understood. (degruyter.com)
Phylogenetic2
  • Nikoh N., Fukatsu T. (2000) Interkingdom host jumping underground: phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps . (jats-truffles.org)
  • Sung G.-H., Hywel-Jones N.L., Sung J.-M., Luangsa-ard J. J., Shrestha B., Spatafora J.W. (2007) Phylogenetic classification of Cordycep s and the clavicipitaceous fungi. (jats-truffles.org)
Amplification1
  • amplification of ribosomal gene portions. (gomp.it)
20171
  • 2017). Nuclear ribosomal DNA reveals infraspecific variation in Corethrogyne filaginifolia (Asteraceae). (uwlax.edu)
Protists2
  • Studying the evolution of protists allows me to examine the evolution of the eukaryotic cell and the origin of multicellular groups (plants, animals, and fungi). (gwu.edu)
  • In the recent past, scientists grouped living things into five kingdoms-animals, plants, fungi, protists, and prokaryotes-based on several criteria, such as the absence or presence of a nucleus and other membrane-bound organelles, the absence or presence of cell walls, multicellularity, and so on. (unizin.org)
Genera1
  • However, because it reflects a common pattern seen in the best sampled fungi and in narrower studies of genera and families, I hypothesize that regional endemism is the general pattern in well-studied genera and more generally fungal biogeography. (ubc.ca)
Systematics1
  • Amanda continued to work as a postgraduate research associate, in the field of microbial systematics at Newcastle University until the beginning of 2009, where upon Amanda took her post as a Lecturer in Biology. (northumbria.ac.uk)
Fungal cell1
  • However, the sequential fungal cell biology of fertilisation and the associated nuclear dynamics after plasmogamy are poorly understood. (exeter.ac.uk)
Integrative Structural Biology2
  • With the rapid progress and improvements in the fields of macromolecular crystallography, Cryo-EM, small angle scattering, electron diffraction and use of XFELs, the new LINXS theme INTEGRATIVE STRUCTURAL BIOLOGY is formed to advance cutting-edge research and to encourage new users to utilize integrative structure biology to address key scientific questions. (lu.se)
  • Both experienced specialists and researchers with more recently established interests in integrative structural biology are expected to greatly benefit from the symposium. (lu.se)
Taxonomy1
Closely related3
  • In contrast, the sequence showed some mismatches with that of the closely related and probably strictly saprotrophic fungus Hymenoscyphus albidus (GenBank accession No GU586891.1). (wallonie.be)
  • The accompanying comparative analysis of these and related publicly available mitochondrial genomes reveals wide variation in size (25-36 Kb) among these closely related fungi. (umd.edu)
  • Our analyses included fungi with diverse life-styles, namely opportunistic pathogens and closely related saprobes, to identify genomic adaptations related to pathogenesis. (nau.edu)
Genome3
  • Genome Biology 14: 405. (dannyhaelewaters.com)
  • And, sequencing bits of its genome, including its ribosomal DNA, Kamran Shalchian-Tabrizi of the Microbial Evolution Research Group (MERG) at the University of Oslo and colleagues discovered that it's not like anything else on earth, falling on the tree of life somewhere between single-celled parasites called excavates and amoebas. (the-scientist.com)
  • Until recently, however, functional analysis of the DED fungi was hampered by the lack of protocols for efficient gene knockout and by the unavailability of a full genome sequence. (sisef.it)
20181
Genus2
Genomic2
Plants2
Evolution1
Domande1
Variation2
  • For the majority of fungi, the interspecific variation exceeds the intraspecific variation. (dannyhaelewaters.com)
  • El Karkouri K., Cleyet-Marel J.-C., Mousain D., Isozyme variation and somatic incompatibility in populations of the ectomycorrhizal fungus Suillus collinitus , New Phytol. (afs-journal.org)
Plant3
  • You could take a plant, a fungus, and an insect, and use this same primer set to amplify the ribosome from each of these organisms. (berkeley.edu)
  • Plant roots associate with diverse communities of arbuscular mycorrhizal fungi (AMF), providing the plant with mineral nutrients in exchange for carbohydrates. (guildhe.ac.uk)
  • Contrasting genotypes showed subtly different preferences for associating with AMF from a mixed community, suggesting a selection process controlled by the plant and/or the fungi. (guildhe.ac.uk)
Sequencing1
Systematic3
Researchers2
  • Researchers identified the internal transcribed spacer (ITS) region of the ribosomal DNA as the universal barcode of fungi. (dannyhaelewaters.com)
  • Mapping Switchgrass Traits with Common Gardens The combination of field data and genetic information has allowed researchers to associate climate adaptations with switchgrass biology. (doe.gov)
20211
  • La búsqueda se orientó a partir de una pregunta de revisión estructurada y se incluyeron estudios originales de pacientes con EP avanzada publicados en bases de datos como Medline y Google Scholar entre 2010 a 2021. (bvsalud.org)
Assays1
  • To evaluate their mNGS method sensitivity and precision, they collected 182 samples from 160 patients, performed cultured based pathogen detection, 16S ribosomal RNA, and 28S-ITS PCR assays in parallel ( Table 1 ). (quickbiology.com)
Pathogens1
  • The specific objective for this agreement is to document through digital imaging and accessioning of an important reference collection of wood decay fungi acquired from Penn State and housed in the U.S. National Fungus Collections in Beltsville, MD, to enhance the ability of USDA to prevent the entry of forest pathogens into the U.S. (usda.gov)