TranscriptomeGene Expression ProfilingSequence Analysis, RNAMolecular Sequence AnnotationOligonucleotide Array Sequence AnalysisExpressed Sequence TagsHigh-Throughput Nucleotide SequencingGene LibraryRNA, PlantCluster AnalysisSequence Analysis, DNAGeraniaceaeTranscription, GeneticRNA, MessengerGenomicsGene Expression Regulation, PlantComputational BiologyDatabases, GeneticGenes, PlantFagaceaeGenome, PlantGene OntologyGene Regulatory NetworksRNA IsoformsGenomeOryza sativaContig MappingFruiting Bodies, FungalGene Expression RegulationGene Expression Regulation, DevelopmentalMicroarray AnalysisReverse Transcriptase Polymerase Chain ReactionEvolution, MolecularRNA, UntranslatedLaser Capture MicrodissectionSpecies SpecificityMyricaPhylogenyFlowersOrobanchaceaeAlternative SplicingConiferophytaMyceliumGene Expression Regulation, BacterialOrgan SpecificityBase SequenceMolecular Sequence DataProteomeComparative Genomic HybridizationCotton FiberRNASoftwareGenome, HumanPrincipal Component AnalysisPollenMetabolic Networks and PathwaysArabidopsisPlant LeavesDatabases, Nucleic AcidDNA, ComplementaryRNA, AntisenseNucleotide MotifsRNA, BacterialReproducibility of ResultsPolyadenylationExonsOpen Reading FramesGene FusionGene ExpressionSignal TransductionReal-Time Polymerase Chain ReactionFish ProteinsGenome, BacterialTranscription FactorsModels, GeneticSequence AlignmentMicroRNAsChromosome MappingPopulusBiosynthetic PathwaysMultigene FamilyPhenotypeRNA EditingZea maysPlant ProteinsSequence Tagged SitesGene Expression Regulation, FungalIntronsAlgorithmsUp-RegulationStress, PhysiologicalLife Cycle StagesPolymorphism, Single NucleotideMicrodissectionHost-Pathogen InteractionsHybridization, GeneticUser-Computer InterfacePlant RootsMammalsConserved Sequence