• In Arabidopsis thaliana we use the spatial data to identify differences in expression levels of 141 genes and 189 pathways in eight inflorescence tissue domains. (nature.com)
  • As a step toward functional annotation of genes required for floral initiation and development within the Eucalyptus genome, we used short read sequencing to analyze transcriptomes of floral buds from early and late developmental stages, and compared these with transcriptomes of diverse vegetative tissues, including leaves, roots, and stems. (oregonstate.edu)
  • AtRTD3 contains over 169,000 transcripts-twice that of the best current Arabidopsis transcriptome and including over 1500 novel genes. (dundee.ac.uk)
  • Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L. (usda.gov)
  • We hypothesized that these act to induce dormancy by turning off another gene called FLOWERING LOCUS T (FT). Turning on of FT was shown to prevent dormancy induction in poplar, and genes similar to DAM are known to regulate FT expression in the model plant Arabidopsis thaliana. (usda.gov)
  • Anonymous Reviewer ( 2020 ) Peer Review #2 of 'Comprehensive transcriptome analysis of reference genes for fruit development of Euscaphis konishii (v0.4)' . (peerj.com)
  • We compared the ortholog gene family of the A. sativum transcriptome to A. thaliana , O. sativa , and Z. mays and found that 12,077 orthologous gene families are specific to A. sativum L. Furthermore, we identified genes involved in plant defense mechanisms, their protein-protein interaction network, and plant-pathogen interaction pathways. (springeropen.com)
  • Indeed, applying our isoform clustering algorithm to the Arabidopsis meeting reduces the full variety of bases to forty four Mb, which is usually as a result of lack of transposable ingredient genes. (roznamaurdu.com)
  • And when I say "delve", I really mean it since this research was the first one to build and study the transcriptome of Rafflesia seeds, that is, the genes expressed in them. (botany.one)
  • of two Arabidopsis thaliana ecotypes with contrasting BTEX tolerance and subsequent validation using T-DNA knockout lines to identify BTEX-tolerance related genes. (zhihuiya.com)
  • Using Arabidopsis mutants impaired in JA biosynthesis or perception, we showed that induction of some IG metabolism genes was COI1-dependent but, surprisingly, JA-independent. (inrae.fr)
  • Here we present the first genome-wide 1-bp resolution maps of histone acetylation, histone methylation and core histone in Arabidopsis thaliana and a comprehensive analysis of these maps and gene expression data in A. thaliana, A. arenosa and allotetraploids. (nih.gov)
  • The Arabidopsis thaliana Niederzenz-1 genome sequence was recently published with an ab initio gene prediction. (biomedcentral.com)
  • At-TAX: A Whole Genome Tiling Array Resource for Developmental Expression Analysis and Transcript Identification in Arabidopsis thaliana. (mpg.de)
  • The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness. (jcvi.org)
  • Despite the fact that the sequence of the human genome is now complete it has become clear that the elucidation of the transcriptome is more complicated than previously expected. (uwc.ac.za)
  • We performed a genome-wide analysis of the Arabidopsis thaliana transcriptome during D. dadantii infection and conducted a genetic study of identified responses. (inrae.fr)
  • We identify DMRs in the A. thaliana 1,001 Genomes dataset to unveil known and unknown genotype-epigenotype associations. (weigelworld.org)
  • We present a new and comprehensive Arabidopsis thaliana Reference Transcript Dataset 3 (AtRTD3). (dundee.ac.uk)
  • 2020. Dataset for the combined transcriptome assembly of and functional annotation. . (ncbs.res.in)
  • Jacobsen AGR, Jervis G, Jian Xu, Topping JF & Lindsey K (2021) Root growth responses to mechanical impedance are regulatedby a network of ROS, ethylene and auxin signalling in Arabidopsis. (ru.nl)
  • Expression Profiling during Arabidopsis/Downy Mildew Interaction Reveals a Highly-Expressed Effector That Attenuates Responses to Salicylic Acid. (prelekara.sk)
  • To draw a global view of plant responses to interactions with the phytopathogenic enterobacterale Dickeya dadantii, a causal agent of soft rot diseases on many plant species, we analysed the early Arabidopsis responses to D. dadantii infection. (inrae.fr)
  • AtRTD3 is a major improvement over existing transcriptomes as demonstrated by analysis of an Arabidopsis cold response RNA-seq time-series. (dundee.ac.uk)
  • The mechanisms underlying the response and recovery of A. paniculata to Mn toxicity were further investigated using transcriptome analysis. (rhhz.net)
  • These data represent the first large-scale transcriptome analysis of dormancy in underground buds of an herbaceous perennial species. (usda.gov)
  • Moreover, we have integrated these data with the results of transcriptome profiling to distinguish metabolomic pathways that are transcriptionally activated from those that are post-transcriptionally regulated. (aber.ac.uk)
  • Moreover, characterisation of D. dadantii disease progression in Arabidopsis mutants impaired in JA or IG pathways showed that JA triggers an efficient plant defence response that does not involve IGs. (inrae.fr)
  • Histone acetylation and methylation regulate gene expression in eukaryotes, but their effects on the transcriptome of a multicellular organism and on the transcriptomic divergence between species are still poorly understood. (nih.gov)
  • We report here gene expression changes in both Arabidopsis and its parasite Hyaloperonospora arabidopsidis (Hpa) simultaneously during infection using a high-throughput RNA sequencing method. (prelekara.sk)
  • This de novo assembly of a red clover transcriptome from leaf material of droughted and non-droughted plants provides a rich source for gene identification, single nucleotide polymorphisms (SNP) and short sequence repeats (SSR). (biomedcentral.com)
  • Overall design: ChIP-Seq: Identification of distribution of H3K9ac, H3K4me3 and H3 in Arabidopsis thaliana leaf. (nih.gov)
  • The heterologous expression of HpDGAT2D in Arabidopsis thaliana and Chlamydomonas reinhardtii significantly increased the TAG content and obviously promoted the MUFAs and PUFAs contents. (researchsquare.com)
  • Expression Profiling during Arabidopsis/Downy Milde. (prelekara.sk)
  • Identification and partial characterisation of a putative novel plant stress response gene from Arabidopsis thaliana. (uwc.ac.za)
  • In the model plant Arabidopsis thaliana, other than the reference accession Col-0, all other accessions de novo assembled with long-reads until now have used PacBio continuous long reads (CLR). (weigelworld.org)
  • Our process includes high-throughput spatial transcriptome profiling followed by spatial gene and pathway analyses. (nature.com)
  • Based on our data, a comprehensive regulatory network in Arabidopsis thaliana was constructed. (nih.gov)
  • Crown buds collected monthly from August through December, over a five year period, were used to monitor the changes in the transcriptome during dormancy transitions. (usda.gov)
  • We first demonstrate the feasibility of the technique by generating spatial transcriptome profiles from model angiosperms and gymnosperms microsections. (nature.com)
  • However, in plants the complexity of cell number, organ size, and developmental time makes this a challenge even in the diminutive model plant Arabidopsis (Arabidopsis thaliana). (jcvi.org)
  • In this study, we found that Mn tolerance and ability to accumulate Mn were higher in A. paniculata than in Arabidopsis thaliana . (rhhz.net)
  • In this study, we focused on the deregulations induced in Arabidopsis thaliana by an aphid vector that were alleviated when the plants were infected with turnip yellows virus (TuYV), a polerovirus strictly transmitted by aphids in a circulative and nonpropagative mode. (bvsalud.org)
  • 1, The author carried out the three stages of fruit ripening transcriptome sequencing, and made a detailed description in materials and methods, but did not mention in the results. (peerj.com)
  • By resequencing Hpa isolate Waco9, we found it evades Arabidopsis resistance gene RPP1 through deletion of cognate recognized effector ATR1. (prelekara.sk)
  • Leveraging SMARTseq2 single-nuclei sequencing, which provided higher gene coverage yet lower cell count, we profiled 269 nuclei covering 36.9% (8,457) of the L. minuta transcriptome. (jcvi.org)