Arabidopsis thaliana, the thale cress, mouse-ear cress or arabidopsis, is a small plant from the mustard family (Brassicaceae), native to Eurasia and Africa. (wikipedia.org)
Variation8
These accessions exhibit considerable genetic and phenotypic variation, which can be used to study the adaptation of this species to different environments. (wikipedia.org)
Natural Variation in Freezing Tolerance and Cold Acclimation Response in Arabidopsis thaliana and Related Species. (mpg.de)
We analyzed 349 Arabidopsis accessions and found extensive variation and high heritabilities for different morphological traits. (nih.gov)
Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6. (mpg.de)
Here we describe natural variation of a class of phenylacylated-flavonols (saiginols), which accumulate to high levels in floral tissues of Arabidopsis. (helsinki.fi)
Genetic dissection of natural variation for stomatal abundance traits in Arabidopsis. (csic.es)
To address this question we are exploiting the genetic variation that exists in nature within the wild, annual, and model plant Arabidopsis thaliana . (csic.es)
Traits1
To identify genetic determinants of performance under variable phosphate supply, we conducted genome-wide-association studies on five highly predictive phosphate starvation response traits in 200 Arabidopsis (Arabidopsis thaliana) accessions. (edu.au)
Genetic5
With this large collection of resistant accessions, questions about species specificity, genetic diversity and the evolution of resistance to powdery mildews can be addressed. (uea.ac.uk)
We have identified genetic variants in Arabidopsis thaliana that are associated with survival of an extreme drought event-a major consequence of global warming. (nature.com)
Genetic characterization of melon accessions in the U.S. National Plant Germplasm System and construction of a melon core collection. (msu.edu)
Genome of 'Charleston Gray', the principal American watermelon cultivar, and genetic characterization of 1,365 accessions in the U.S. National Plant Germplasm System watermelon collection. (msu.edu)
A) Growth phenotype of two Arabidopsis accessions, Landsberg and Doñana, at 21 and 28 °C. B) Genetic diversity (as haplotype network) of ICA2 proteins from worldwide accessions of Arabidopsis thaliana and A. lyrata . (csic.es)
Proteins1
Two of those proteins, hereafter named Chloroplast protein for Growth and Fertility (CGF1) and CGF2, are highly homologous with each other but not with any other proteins encoded in the Arabidopsis genome. (biomedcentral.com)
Species4
Interactions of the two Erysiphe isolates with 360 A. thaliana accessions were examined to provide a comprehensive profile of naturally occurring powdery mildew resistance in this weedy species. (uea.ac.uk)
Dependence of floral induction on day length differs between species and even accessions within a single species [ 5 ]. (biomedcentral.com)
Together, our findings show that the MNB1 gene negatively controls the Fe-deficiency response in Arabidopsis via modulating reactive oxygen species (ROS) levels and the ROS-mediated signaling pathway, thereby affecting the expression of Fe uptake- and translocation-related genes. (biomedcentral.com)
Various species of tomato, maize and Arabidopsis thaliana are the primary model systems used. (helsinki.fi)
Protein6
Haplogroup analysis revealed a phosphorylation site in the protein encoded by the PILS7 allele from stress-sensitive accessions as well as additional auxin-responsive elements in the promoter of the 'stress tolerant' allele. (edu.au)
The present study characterizes an inhibitor of endomembrane protein trafficking, TE1 (trafficking and endocytosis inhibitor 1/TENin1) that reduces gravitropic root bending in Arabidopsis thaliana seedlings. (portlandpress.com)
Assessing Protein Synthesis and Degradation Rates in Arabidopsis thaliana Using Amino Acid Analysis. (mpg.de)
Growth rate correlates negatively with protein turnover in Arabidopsis accessions. (mpg.de)
Quantifying Protein Synthesis and Degradation in Arabidopsis by Dynamic 13CO2 Labeling and Analysis of Enrichment in Individual Amino Acids in Their Free Pools and in Protein. (mpg.de)
The fasta file contains protein sequences with long accession names. (biostars.org)
Here, we use a computational approach to perform genome-wide identification and analysis of 611 orthologues of the Arabidopsis thaliana flowering genes. (springer.com)
Given that the propagation of DNA methylation at CpG sites, mediated in Arabidopsis by MET1, plays a central role in epigenetic inheritance, we examined genome-wide DNA methylation in partial and complete loss-of-function met1 mutants. (biorxiv.org)
Transcriptome analyses with whole plants suggested that the spaceflight environment had little impact on the transcriptome of arabidopsis, however, closer examination of selected tissues revealed that there are a number of tissue-specific responses that arabidopsis employs to respond to this novel environment. (nih.gov)
Gene6
Reduced miR158 led to increased level of its target, a pseudo-pentatricopeptide gene that is otherwise targeted by ta-siRNAs generated by miR173 cascade in other accessions. (ncbs.res.in)
These tertiary sRNAs mediated robust silencing of a gene involved in stomatal closure in Himalayan accessions lacking miR158 expression. (ncbs.res.in)
Our analysis indicated that on average each Arabidopsis flowering gene has two orthologous copies in quinoa. (springer.com)
Here, we found that the MNB1 (mannose-binding-lectin 1) gene is involved in the regulation of Fe-deficiency stress response in Arabidopsis thaliana . (biomedcentral.com)
Compared with the ISR-inducible accession Columbia (Col), accessions RLD and Ws were not affected in JA-induced inhibition of root growth and expression of the JA-responsive gene Atvsp, suggesting that the ISR1 locus is not involved in JA signaling. (uu.nl)
Allele1
All accessions, except two, that contain allele MYB114-2. (bioinf.org)
Accumulation2
Induction of anthocyanin accumulation by osmotic stress was assessed in 360 accessions of identified a causal polymorphism at amino acid (AA) position 210 of this transcription factor of the anthocyanin biosynthesis pathway. (bioinf.org)
Moreover, a few studies report on variance in constitutive or stress induced anthocyanin accumulation in different accessions of Arabidopsis [5, 12, 22, 23]. (bioinf.org)
Locus5
Here we show that in Himalayan Arabidopsis thaliana accessions having natural mutations in miR158 locus exhibit robust cascade silencing in pentatricopeptide (PPR)-like locus. (ncbs.res.in)
A second locus featured uncharacterized endomembrane-associated auxin efflux carrier encoding PIN-LIKES7 (PILS7) which was more strongly suppressed in phosphate-limited roots of phosphate-starvation sensitive accessions. (edu.au)
Floral inducers including FLOWERING LOCUS T (FT), FD, SUPPRESSOR OF CONSTANS 1 (SOC1), and LFEAY (LFY) activate the transcription of the majority of genes floral genes, promoting Arabidopsis bolting and flowering ( Johansson and Staiger, 2015 ). (frontiersin.org)
The Arabidopsis ISR1 locus controlling rhizobacteria-mediated induced systemic resistance is involved in ethylene signaling. (uu.nl)
Accessions RLD and Wassilewskija (Ws) are recessive at the ISR1 locus and are, therefore, unable to develop ISR. (uu.nl)
Growth4
Allelic differences in a vacuolar invertase affect Arabidopsis growth at early plant development. (mpg.de)
Metabolism and Growth in Arabidopsis Depend on the Daytime Temperature but Are Temperature-Compensated against Cool Nights. (mpg.de)
Determined photosynthetic and flowering heat tolerance is associated with stomatal closure and the plant growth hormone abscisic acid synthesis and/or response in Arabidopsis and tomato. (umd.edu)
2020). The analysis of this collection for plant growth has identified an accession from Doñana National Park (Don-0) that is not able to grow at high temperature (Figure 1). (csic.es)
Tolerance3
Furthermore, the ectopic expression (EE) of CmNAC1 in Arabidopsis led to ABA hypersensitivity and enhanced tolerance to salinity, drought and cold stress. (frontiersin.org)
My work showed diurnal temperature fluctuations affect plant morphogenesis broadly and that ABA is associated with and high temperature tolerance in flowering in Arabidopsis and tomato. (umd.edu)
Wildtype1
Diurnal changes of polysome loading track sucrose content in the rosette of wildtype Arabidopsis and the starchless pgm mutant. (mpg.de)
The EnCoDe project used the model plant Arabidopsis to elucidate how this process is regulated and to understand its significance in natural populations. (europa.eu)
Mutant1
The former allele's inability to complement the pils7-1 mutant in the Col-0 background implies the presence of a kinase signaling loop controlling PILS7 activity in accessions from phosphorus-rich environments, while survival in phosphorus-poor environments requires fine-tuning of stress-responsive root auxin signaling. (edu.au)
Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage. (nih.gov)
Natural5
Indian Himalayan natural Arabidopsis thaliana accessions with abolished miR158 levels exhibit robust miR173-initiated trans-acting cascade silencing. (ncbs.res.in)
Thousands of natural inbred accessions of A. thaliana have been collected from throughout its natural and introduced range. (wikipedia.org)
With the help of Albert Kranz, these were organised into a large collection of 750 natural accessions of A. thaliana from around the world. (wikipedia.org)
The importance of these rules was confirmed by analyses of common epialleles in natural Arabidopsis accessions and verified in rice. (biorxiv.org)
To explore the properties of the shoot branching regulatory system in natural populations, we investigated the ability of a large collection of natural accessions of Arabidopsis to adjust shoot branching levels in response to nitrate supply. (europa.eu)
Genes1
In addition to these ITGAL transcription factors, many other structural and regulatory genes of the pathway are up-regulated in the reference accession Col-0 under numerous stress conditions [4, 19C21]. (bioinf.org)
Arabidopsis thaliana was evaluated for its response to the spaceflight environment in three replicated experiments on the International Space Station. (nih.gov)
Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. (uchicago.edu)
In Arabidopsis, the rhizobacterial strain Pseudomonas fluorescens WCS417r triggers an induced systemic resistance (ISR) response that is effective against different types of pathogens. (uu.nl)
Transcriptional regulation of aquaporins in accessions of Arabidopsis in response to drought stress. (lu.se)
The CmNAC1 -EE plants exhibited different root architecture, leaf morphology, and significantly high concentration of ABA compared with WT Arabidopsis under normal conditions. (frontiersin.org)
Leaf chlorosis in Arabidopsis thaliana hybrids is associated with transgenerational decline and imbalanced ribosome number. (mpg.de)
Functional1
Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum). (mpg.de)
Resistance2
Among the accessions exhibiting some degree of resistance, most (84) responded differentially to UEA1 and UCSC1 and the remainder were resistant to both isolates. (uea.ac.uk)
Arteaga A, Savic M, Méndez-Vigo B, Fuster-Pons A, Torres-Pérez R, Oliveros JC, Picó FX, Alonso-Blanco C. MYB transcription factors drive evolutionary innovations in Arabidopsis fruit trichome patterning . (csic.es)
Drought1
Fig. 1: Terminal drought treatment and phenotyping of 211 accessions. (nature.com)
Collection3
Here, we report 1,107 high-quality single-base resolution methylomes and 1,203 transcriptomes from the 1001 Genomes collection of Arabidopsis thaliana. (rbind.io)
each T1 transformant has been maintained individually as part of the Syngenta Arabidopsis Insertion Library (SAIL) collection. (arabidopsis.info)
To this end, we are exploiting an A. thaliana regional collection of more than 400 wild accessions collected in the Iberian Peninsula (Montes et al. (csic.es)
Development2
For annual plants, such as Arabidopsis thaliana , proper determination of the flowering time is critical for plant reproductive success because a switch from vegetative to reproductive development is irreversible. (biomedcentral.com)
Here, we report that Arabidopsis CGF1 and CGF2 are important for plant development by mediating chloroplast integrity and possibly development. (biomedcentral.com)
Clone1
One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence. (genscript.com)