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  • putative
  • Here, we introduce a new training set design and machine learning based approach that combines dependent heterogeneous protein annotations from the entire ontology to evaluate putative co-complex protein interactions determined by empirical studies. (deepdyve.com)
  • locus
  • "Molecular cloning and analysis of l(1)ogre, a locus of Drosophila melanogaster with prominent effects on the postembryonic development of the central nervous system. (tcdb.org)
  • transcripts
  • I am using the gencode.v19.annotation.gtf (head of the GTF below) to assign gene_types to the transcripts in my study via ensembl gene IDs. (biostars.org)
  • According to Vega http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html , processed_transcript is above these other long ncRNAs in a hierarchy, which makes sense except I see many transcripts with this annotation and not on of the subtypes like lincRNA. (biostars.org)
  • cufflinks
  • Using these revised annotations, we perform differential expression testing using the cufflinks suite to provide a broad overview of differential expression between reproductive tissues and the carcass. (g3journal.org)
  • Protein Interactions
  • These achieve a high performance area under the ROC curve of ≤0.97, outperforming go2ppi-a previously established prediction tool for protein-protein interactions (PPI) based on Gene Ontology (GO) annotations. (deepdyve.com)
  • analysis
  • Genome-wide analysis of promoter architecture in Drosophila melanogaster. (fruitfly.org)
  • However, driven by the lack of an universal method, previous studies on AS triggered protein modifications employ substantially variable in-house data analysis pipelines that rely on heterogeneous sources (i.e. different databases of AS events and of protein annotations) and on specific ad hoc decisions for the filtering thresholds applied, which makes the corresponding results difficult to compare. (deepdyve.com)
  • roles
  • In Drosophila , Hh, Wg and BMP growth factors play cardinal roles in patterning and cell fate specification in the embryo and in larval imaginal discs. (biologists.org)
  • Molecular
  • 2014). Annotations that relate gene products to biological process, molecular function and sub-cellular localization have been curated for over a decade via the Gene Ontology (GO) (Ashburner et al. (deepdyve.com)