Loading...
  • GENES
  • The KEGG Annotation Guide is a collection of HTML tables showing summary views of the current annotation of the KEGG GENES database, such as how K numbers are defined and assigned for distinguishing related genes and for comparing different subunit structures. (genome.jp)
  • The pipeline uses a modular framework for the execution of all annotation tasks from the fetching of raw and curated data from public repositories (sequence and Assembly databases) to the alignment of sequences and the prediction of genes, to the submission of the accessioned annotation products to public databases. (nih.gov)
  • The simpliest way to perform gene annotation relies on homology based search tools, like BLAST, to search for homologous genes in specific databases, the resulting information is then used to annotate genes and genomes. (wikipedia.org)
  • The additional information allows manual annotators to deconvolute discrepancies between genes that are given the same annotation. (wikipedia.org)
  • text annotation
  • For Web-based text annotation systems, see Text annotation. (wikipedia.org)
  • Text Annotation is the practice and the result of adding a note or gloss to a text, which may include highlights or underlining, comments, footnotes, tags, and links. (wikipedia.org)
  • In some fields, text annotation is comparable to metadata insofar as it is added post hoc and provides information about a text without fundamentally altering that original text. (wikipedia.org)
  • Text annotation may be as old as writing on media, where it was possible to produce an additional copy with a reasonable effort. (wikipedia.org)
  • With the rise of the printing press and the relative ease of circulating and purchasing individual (rather than shared) copies of texts, the prevalence of socially shared annotations declined and text annotation became a more private activity consisting of a reader interacting with a text. (wikipedia.org)
  • Text annotation in Information Technology (IT) systems raises technical issues of access, linkage, and storage that are generally not relevant to paper-based text annotation, and thus research and development of such systems often addresses these areas. (wikipedia.org)
  • Educational research in text annotation has examined the role that both private and shared text annotations can play in supporting learning goals and communication. (wikipedia.org)
  • ontology
  • The specification is divided into two major sections: the terms defined in the Web Annotation ontology, and terms from other ontologies used in the model. (w3.org)
  • The annotation mechanism is independent of the ontology expression language and this specification requires no particular ontology language. (w3.org)
  • The National Center for Biomedical Ontology (www.bioontology.org) develops tools for automated annotation of database records based on the textual descriptions of those records. (wikipedia.org)
  • As a general method, dcGO has an automated procedure for statistically inferring associations between ontology terms and protein domains or combinations of domains from the existing gene/protein-level annotations. (wikipedia.org)
  • protein
  • p>An evidence describes the source of an annotation, e.g. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc. (uniprot.org)
  • A draft of the complete human proteome has been available in UniProtKB/Swiss-Prot since 2008 and one of the current priorities of the Chordata protein annotation project is to improve the quality of human sequences provided. (uniprot.org)
  • UniProt is a member of the Consensus CDS project and we are in the process of reviewing our records to support convergence towards a standard set of protein annotation. (uniprot.org)
  • Indeed, this annotation project includes the Variation Annotation project, the goal of which is to annotate all known human genetic diseases and disease-linked protein variants, as well as neutral polymorphisms. (uniprot.org)
  • Gene based annotation is based on the fact that non-synonymous mutations can alter the protein sequence and that splice site mutation may disrupt the transcript splicing pattern. (wikipedia.org)
  • Knowledge base annotation is done based on the information of gene attribute, protein function and its metabolism. (wikipedia.org)
  • In this type of annotation more emphasis is given to genetic variation that disrupts the protein function domain, protein-protein interaction and biological pathway. (wikipedia.org)
  • The Open Protein Structure Annotation Network(TOPSAN) is a wiki designed to collect, share and distribute information about protein three-dimensional structures The site runs on the MindTouch software. (wikipedia.org)
  • organism
  • The Annotation Release name is the combination of the organism name and Annotation Release number (e.g. (nih.gov)
  • Many tools available have been developed for SNP annotation in different organism, some of them are optimized for use with organisms densely sampled for SNPs (such as humans), but there are currently few tools available that are species non-specific or support non-model organism data. (wikipedia.org)
  • GenBank
  • VEGA was developed by the Wellcome Trust Sanger Institute and is in close association with other annotation databases, such as ZFIN (The Zebrafish Information Network), the Havana Group and GenBank. (wikipedia.org)
  • Linked Data
  • It also lists recommended terms from other ontologies that are used in the model, and provides the JSON-LD Context and profile definitions needed to use the Web Annotation JSON serialization in a Linked Data context. (w3.org)
  • enables
  • The Affymetrix Annotation Converter software tool enables you to create custom SQLite format annotations (annot.db) for use in Affymetrix® Genotyping Console software (GTC) and Affymetrix Power Tools (APT). (affymetrix.com)
  • Successful temporal annotation enables systems to find out when facts asserted in texts are true, to build timelines, to extract plans, and to discover mentions of change. (wikipedia.org)