• a The values were shown as maximum variation of nucleotide sequence identities (%) within genotype 1. (cdc.gov)
  • c Thresholds of nucleotide sequence identities % as different genotypes. (cdc.gov)
  • Nucleotide sequence analysis of five representative isolates confirmed that all isolates possessed one type of amino acid motif (R-S-S-R/GL) at cleavage site of HA, Deduced amino acid sequences showed the presence of L226 (234 in H9 numbering) in all five Iranian isolates which indicates a preference to binding of α (2-6) sialic acid receptors. (scialert.net)
  • Overall, the nucleotide and amino acid identities between the alpha- and gammaherpesvirus sequences ranged between 40.6 to 65.5% and 45.1 to 55.6%, respectively. (vin.com)
  • Centers for Disease Control and Prevention, Fort Collins, Colo- nucleotide identity with ZIKV. (folkhalsomyndigheten.se)
  • 3 In 2012, the virus was assigned as EV-C105 because subsequent sequencing showed that it had only 74.7% nucleotide and 82.5% amino acid identity to EV-109, thus satisfying the criteria for assignment of a new enterovirus serotype. (who.int)
  • 9 The sequence was compared to known VP1 sequences in GenBank using tblastx (which searches a translated nucleotide database using a translated nucleotide query). (who.int)
  • Two widely distributed lepidopteran herbivores, codling moth Cydia pomonella (Tortricidae) feeding in apples and pears, and the African cotton leafworm Spodoptera littoralis (Noctuidae), a moth feeding on foliage of a wide range of herbaceous plants, both express a receptor ortholog, OR19, which shares 58% amino acid identity and 69% amino acid similarity. (frontiersin.org)
  • In higher plants and microalgae, there are four major groups of DGATs: (1) the membrane bound form of DGAT1, (2) the membrane bound form of DGAT2 sharing low sequence similarity with DGAT1, (3) the soluble type of DGAT3, which is localized in the cytosol, and (4) the dual function of WS/DGAT, which possesses both wax ester and TAG biosynthesis activities [12-18]. (researchsquare.com)
  • The predicted SGT2 sequence shows 63% amino acid identity and 80% similarity with the SGT1 protein. (usda.gov)
  • Difference Between Homology, Similarity , and Identity. (assignmentexpert.com)
  • IL-17A, the original member of the IL-17 cytokine family, was first identified in 1993 and was initially recognized for its similarity to a sequence belonging to the open reading frame 13 of Herpesvirus saimiri (HVS13) [ 1 , 2 ]. (hindawi.com)
  • Structurally, the IL-17 cytokine family members have no sequence similarity to any other known cytokine or other mammalian proteins [ 2 ]. (hindawi.com)
  • These cytokines have their greatest similarity within the C-terminal 70 amino acids and have four well-conserved cysteines. (hindawi.com)
  • The deduced amino acid sequence of PPS1p shows similarity with protein-tyrosine phosphatases (PTPases) and is most closely related to a subfamily of PTPases that are capable of dephosphorylating phosphoseryl and phosphothreonyl residues as well as phosphotyrosyl residues. (embl.de)
  • Furthermore, there is no sequence similarity between MSP and any other known protein. (lu.se)
  • This DATASET 5 is a subset of the DATASET2 obtained by clustering the protein sequences based on their sequence similarity to remove close homologues which may cause problems with certain applications. (lu.se)
  • Based on primary sequence comparisons, β subunits are predicted to be modular structures composed of five domains (A-E) that are related to the large family of membrane-associated guanylate kinase proteins. (jneurosci.org)
  • Then, we selected 48 genes that may encode uncharacterised effectors (e. g. no detectable amino acid identity to other proteins or with a particular putative biochemical activity) from the genome of C. trachomatis strain L2/434/Bu. (europa.eu)
  • The identities of the peptides attributed to selected gluten proteins were confirmed using MS/MS with BioMultiView to match the predicted and measured partial amino acid sequences. (unboundmedicine.com)
  • The four conserved cysteines in the C-terminal half of the IL-17F sequence are shown to form a cystine knot structural motif in the crystal structure, and, interestingly, this cystine knot structure is similar to a common structural motif seen in several growth factors, such as bone morphogenic proteins (BMPs), TGF- β , nerve growth factor (NGF), and platelet-derived growth factor (PDGF) [ 9 ]. (hindawi.com)
  • In addition to the 10 cysteines there are only 16 identical amino acids in the proteins from human, rhesus monkey, baboon, pig, rat and mouse. (lu.se)
  • The tree-dimensional structure of human and porcine MSP are very similar in spite of only a 50 % identity in the amino acid sequences of the two proteins. (lu.se)
  • The numerous members of this family are organized in several subgroups according to structural identities found within the proteins. (bvsalud.org)
  • Though the overall fold of the structure, comprising two domains, is similar to the others, a few natural substitutions of conserved amino acid residues at the interdomain cleft of ervatamin B are expected to increase the stability of the protein. (rcsb.org)
  • We have purified and cloned a HeLa cell nuclear protein that strongly stimulates binding of retinoic acid and thyroid hormone receptors (RARs and TRs) to response elements. (nih.gov)
  • The COX6A1 protein weighs 12 kDa and is composed of 109 amino acids. (wikipedia.org)
  • Protein identity confirmed by LC-MS/MS. (biovendor.com)
  • The human SCGB3A2 gene encodes a protein of molecular weight 10.2 kDa consisting of 93 amino acids, of which the N-terminal 21 amino acid residues exhibit a characteristic signal sequence that may function to target the protein to a secretory pathway. (biovendor.com)
  • Recombinant fusion protein containing a sequence corresponding to amino acids 1-140 of human WBP11 (NP_057396.1). (prosci-inc.com)
  • This protein has 95% amino acid sequence identity to the mouse Wbp11 protein. (prosci-inc.com)
  • Parvalbumin has a highly conserved amino acid sequence and shows high percentage of identity among different fish species, making this protein the most common cause of cross reactivity in fish allergy. (usda.gov)
  • For this, we constructed translational fusions comprising the first 20 amino acids of the IncA or IncC effectors and a reporter protein (the mature form of TEM-1 beta-lactamase), expressed under the control of the Y. enterocolitica yopE effector gene promoter (PyopE). (europa.eu)
  • As negative control, we used a fusion between the first 20 amino acids of a C. trachomatis ribosomal protein and TEM-1 (RplJ20-TEM-1). (europa.eu)
  • The 149 amino acid recombinant protein has a predicted molecular mass of approximately 16.9 kD. (biolegend.com)
  • We show that ORF8 has properties of an extracellular soluble protein and shares a significant degree of amino acid sequence identity with toxic shock syndrome toxin. (biorxiv.org)
  • The hOAT3 cDNA consisted of 2179 base pairs that encoded a 543-amino-acid residue protein with 12 putative transmembrane domains. (aspetjournals.org)
  • We report evidence from cDNA isolation and expression analysis as well as analyses of genome, expressed sequence tag (EST), cDNA and expression databases for a new gene named SPRN (shadow of prion protein). (nih.gov)
  • SPRN comprises two exons, with the open reading frame (ORF) contained within exon 2, and codes for a protein of 130-150 amino acids named Shadoo (Japanese shadow), predicted to be extracellular and GPI-anchored. (nih.gov)
  • Analysis of the predicted amino acid sequence suggests that the protein consists of an active phosphatase domain, an inactive phosphatase-like domain, and an NH2-terminal extension. (embl.de)
  • The protein is ~90 amino acids long and contains 10 cycteines forming five disulfide bonds. (lu.se)
  • The proposed method is novel because it works independently of protein sequence databases and without any prior knowledge about modifica- tions. (lu.se)
  • The matching is com- plicated by the fact that there are protein modifications and the sequence databases store the unmodified sequences. (lu.se)
  • PTMs from this list in conjunction with a protein sequence and a few precursor masses. (lu.se)
  • A large family of structurally-related transcription factors that were originally discovered based upon their close sequence homology to an HMG-box domain found in SEX-DETERMINING REGION Y PROTEIN. (bvsalud.org)
  • The hemadsorbing site of neuraminidase had up to 3 amino acid substitutions and is different from those of earlier Iranian viruses. (scialert.net)
  • in December 2006, UniMod lists 495 modifications including 144 amino acid substitutions [6]. (lu.se)
  • Among the IL-17 cytokine family members, IL-17F shows the highest amino acid sequence homology (50%) to IL-17A, while only 10-30% sequence identity is seen between IL-17A and the other family members [ 10 ]. (hindawi.com)
  • The carbohydrate-active enzymes database (CAZy", NUCLEIC ACIDS RES. (sumobrain.com)
  • Screening for sequence variations in the exons and the 5´ promoter region of the SCGB3A2 gene among patients with asthma and healthy control individuals revealed the presence of a point mutation, in the promoter region, that appears to be responsible for reduced transcriptional activity of the gene and is associated with an increased risk of asthma. (biovendor.com)
  • 2,3 The targeted sequence corresponded to a region of the DNA polymerase gene containing multiple conserved amino acid motifs. (vin.com)
  • These viruses were rapidly characterized after sequencing of DNA polymerase gene fragments, multiple sequence alignments and phylogeny. (vin.com)
  • The sequence of the beta-lactamase gene was also determined. (lu.se)
  • Amino acid sequencing of some beta-lactamases has shown that substitution of only a few amino acids in the bla gene leads to high-level resistance against specific cephalosporins. (lu.se)
  • A gene encoding L-serine dehydrogenase (L-SerDH) that exhibits extremely low sequence identity to the Agrobacterium tumefaciens L-SerDH was identified in the hyperthermophilic archaeon Pyrobaculum calidifontis. (rcsb.org)
  • We and other groups discovered the human IL-17F gene from a human EST sequence, a genomic DNA clone, and T-cell cDNA sequences in 2001 [ 3 , 8 , 9 ]. (hindawi.com)
  • The gene is localized on the same chromosome at the distance of about 50 kb from telomeric sequences of IL-17A gene, and both genes are in a tail-to-tail orientation [ 3 ]. (hindawi.com)
  • The Menkes gene is located on the long arm of the X chromosome at Xq13.3, and the gene product (ATP7A) is a 1500-amino acid P-type adenosine triphosphatase (ATPase) that has 17 domains - 6 copper binding, 8 transmembrane, a phosphatase, a phosphorylation, and an ATP binding. (medscape.com)
  • Two nucleotides were different between the E. coli (Tn3) and H. ducreyi (pCb) genes that affected the amino-acid sequence. (lu.se)
  • The Menkes and Wilson disease genes have 55% amino acid identity. (medscape.com)
  • Current diagnostic PCR assays target a variety of SARS CoV-2 genes and the vast majority target sequences in regions of the SARS CoV-2 genome that are highly conserved. (who.int)
  • however, as evidenced by genome sequence analysis, the organism lacks common enzymes required for the de novo synthesis of precursors of PGN, which rationalizes its MurNAc auxotrophy. (karger.com)
  • Therefore, the genome sequences of several lepidopteran insects have been reported. (bvsalud.org)
  • Enterovirus genotyping was performed by partial sequencing of the VP1 region of the enterovirus genome. (who.int)
  • By offering empowerment and control, companies convince consumers to sequence their genome by granting the company access to their genetic data in exchange to results that are not always accurate. (bvsalud.org)
  • The aim of this study is to understand if the production of GABA in bifidobacteria is a strain-specific feature, analyzing the genomic sequence of 1,022 bifidobacterial strains belonging to the currently known 77 Bifidobacterium taxa, representing 70 species and seven subspecies, coupling the in silico information with an in vitro measurements of GABA levels generated by these bacteria. (nature.com)
  • SDR enzymes have critical roles in lipid, amino acid, carbohydrate, cofactor, hormone and xenobiotic metabolism as well as in redox sensor mechanisms. (researchgate.net)
  • The next closest genotype was EV-109 with 89% amino acid identity (GenBank accession number: ADK22861), another group C enterovirus. (who.int)
  • Rat IL-7, amino acids Asp26 - Ile154 (Accession # P56478) was expressed in CHO cells. (biolegend.com)
  • 10 It showed 99% amino acid identity to EV-C105 with sequence coverage of 100% (GenBank accession number: AFG25720), an EV-C105 strain that was identified in Cyprus in 2012. (who.int)
  • Strikingly, KLRB1B/NKR-P1B and KLRB1C/NKR-P1C share 96% amino acid sequence identity in their extracellular C-type lectin domains. (bdbiosciences.com)
  • The binding efficiency was dependent on the sequence, relative orientation, and spacing of the repeated motifs of response elements. (nih.gov)
  • Short-chain dehydrogenases/reductases (SDRs) constitute a large family of NAD(P)(H)-dependent oxidoreductases, sharing sequence motifs and displaying similar mechanisms. (researchgate.net)
  • The molecular characterization was based on the RAPD markers, telomeric fingerprinting and ITS sequencing. (scielo.br)
  • The Sgt2 nucleic acid sequence is 68% identical to Sgt1 a UDP-galactose:solanidine galactosyl transferase. (usda.gov)
  • 1 Interestingly, the amino acid sequence deduced from the short DNA polymerase fragment of one of the two alphaherpesviruses from our study was 96.8% identical to one of the viruses associated with generalized lethal infection. (vin.com)
  • The amino acid sequences deduced from the four long DNA polymerase fragments of these viruses were between 88.1 and 96.3% similar and between 84.8 and 93.8% identical. (vin.com)
  • The fish and mammalian sequences are also well conserved, particularly for zebrafish, to beyond the end of the hydrophobic sequence (identity 41-53%, 78 amino acids, zebrafish length). (nih.gov)
  • Kuo, 1998 ), but the molecular identities of these channels are unknown. (jneurosci.org)
  • Huang Y, Niu B, Gao Y, Fu L, Li W. CD-HIT Suite: a web server for clustering and comparing biological sequences. (lu.se)
  • and a C-terminal peptide predicted to be a signal sequence for glycophosphotidylinositol (GPI)-anchor attachment. (nih.gov)
  • The method's focus is to globally detect mass differences, not to assign peptide sequences or modifications to individual spectra. (lu.se)
  • The goal is to assign acquired spectra to known peptide sequences and potential co- and post-translational modifica- tions. (lu.se)
  • Gamma aminobutyric acid (GABA) is the principal inhibitory neurotransmitter playing a key role in anxiety and depression disorders in mammals. (nature.com)
  • MSP is also present in other mammals, the amino acid sequence is, however, very different from that of humans. (lu.se)
  • The degree of likeness is achieved by finding the optimal alignment between two sequences and obtaining pairwise comparison. (assignmentexpert.com)
  • Amino acid sequences of parvalbumins were retrieved from NCBI, and following alignment, the phylogenic tree was drawn and potential epitopes were determined and theirphysicochemical properties analyzed. (usda.gov)
  • 6 A partial VP1 sequence was then obtained by amplification and sequencing of a 375bp region. (who.int)
  • Sequence analysis of the small DNA fragments indicated that alpha or gamma herpesviruses were present in the lesions. (vin.com)
  • The amino acid sequences of the alphaherpesviruses small DNA polymerase fragments from the skin lesions shared 77.2% identity. (vin.com)
  • We show also that unstable RAR-RXR heterodimers were formed in solution, and that C-terminal sequences and the DNA-binding domains of both receptors were required for efficient formation of stable heterodimers on response elements. (nih.gov)
  • In order to increase the amount of sequence derived from these lesions, direct PCR was performed using the primary primers of the nested PCR. (vin.com)
  • An amino terminal fragment of Sgt2 was used to create an antisense transgene under control the Gbss6 promoter and the Ubi3 polyadenylation signal. (usda.gov)
  • The amino-terminal contains 8His-2(GGGS) IEGR tag. (biolegend.com)
  • The predicted N-terminal amino acid is His. (biolegend.com)
  • Human and mouse SOX1 share 97% amino acid sequence identity. (novusbio.com)
  • Human and mouse CRTH-2 share 78% amino acid sequence identity. (rndsystems.com)
  • Human nNOS shares about 55% amino acid sequence identity with eNOS and iNOS. (rndsystems.com)
  • The amino acid sequence of rat IL-7 possesses approximately 89 % and 70 % identity with mouse and human, respectively. (biolegend.com)
  • At the amino acid sequence identity across the kingdoms as low as 22-27%, all CYP51 family members catalyze one essentially the same three-step reaction of the oxidative removal of the 14α-methyl group from sterol precursors, enabling the formation of cholesterol in humans vs. ergosterol/egrosterol-like compounds in human pathogens. (vanderbilt.edu)
  • This is the negative (neutral) dataset or non synonymous coding SNV dataset comprising human non synonymous coding SNVs on 5469 representative sequences (clusters) from the dbSNP database build 131. (lu.se)
  • These two polypeptides share 66% amino acid sequence identity. (wikipedia.org)
  • Caution: Sodium azide yields highly toxic hydrazoic acid under acidic conditions. (bdbiosciences.com)
  • The enzyme activity was inhibited by clavulanic acid but not by. (lu.se)
  • The enzyme activity was inhibited by clavulanic acid but not by boric acid, cefotaxime, ethylenediaminetetraacetic acid, or phenylmethylsulfonyl fluoride. (lu.se)
  • It confirmed that the enzyme belonged to a class A beta-lactamase which had 99% identity to the ampicillin resistance transposon Tn3 of pBR322. (lu.se)
  • We have determined the localization of apatite within type I collagen fibrils of calcifying turkey leg tendons by both bright field and selected-area dark field (SADF) electron microscopy and have compared this to computer-modeled, chick type I collagen amino acid sequence data. (mcmaster.ca)
  • The predicted amino acid sequence showed 36% identity with that of Pseudomonas aeruginosa L-SerDH, suggesting that P. calidifontis L-SerDH is a novel type of L-SerDH, like Ps. (rcsb.org)
  • 2 Due to a lack of sequence data this virus was initially identified as Enterovirus 109 (EV-109). (who.int)
  • Sequence with the highest number of variations was chosen to represent each cluster. (lu.se)
  • It also shares 96% sequence identity with mouse or rat nNOS. (rndsystems.com)
  • The objective of this document is to outline the available methods and tools for screening and sequencing patient specimens for the detection of VOC or VOI, with a focus on those that offer a rapid turn-around time so as to support rapid implementation of public health actions for COVID 19 control. (who.int)