This four-year project aimed to address these issues by completing the genetic mapping of the blackleg resistance gene Rlm11, incorporating Rlm11 from the winter-type B. rapa to a spring-type B. napus , and generating molecular markers linked to Rlm11. (canolacouncil.org)
This homozygous Rlm11 line named 'BR-11' was then used to generate inter-species ( B. napus x B. rapa ) mapping populations by crossing BR-11 to the double haploid, blackleg susceptible B. napus line Topas DH16516. (canolacouncil.org)
We have assessed whether the highly parallel Illumina GoldenGate® Genotyping Assay is suitable for the screening of a BAC library of the polyploid Brassica napus genome. (biomedcentral.com)
A multidimensional screening platform was developed for a Brassica napus BAC library which is composed of almost 83,000 clones. (biomedcentral.com)
Intragenomic and intergenomic SNPs were included in Illumina's GoldenGate® Genotyping Assay and both SNP classes were used successfully for screening of the multidimensional BAC pools of the Brassica napus library. (biomedcentral.com)
Illumina's GoldenGate® Genotyping Assay can be efficiently used for screening of multidimensional Brassica napus BAC pools. (biomedcentral.com)
Brassica napus (AACC) is an amphidiploid species that was formed by hybridization of two Brassica species that diverged approximately 4 million years ago, Brassica rapa (AA) and Brassica oleracea (CC) [ 10 , 11 ]. (biomedcentral.com)
Taking the evolutionary history of the Brassica species into account, every single-copy gene in Arabidopsis thaliana should be present in three copies in the diploid Brassica species, in Brassica napus as much as six copies should be found. (biomedcentral.com)
A high-quality reference sequence for the Brassica napus genome is not yet available, thus studies of specific regions of the Brassica napus genome at sequence level have relied on the analysis of bacterial artificial chromosomes (BACs) or BAC contigs. (biomedcentral.com)
These studies showed that the A and C genomes in Brassica napus are very similar to those of the progenitors Brassica oleracea and Brassica rapa , however small differences with respect to the content of genes and mobile elements were observed. (biomedcentral.com)
Thus, studies in Brassica napus can draw on resources that have been assembled for the progenitor genomes. (biomedcentral.com)
The amphiploid species Brassica napus (oilseed rape, Canola) is a globally important oil crop yielding food, biofuels and industrial compounds such as lubricants and surfactants. (biomedcentral.com)
Identification of the likely ancestors of each of the two genomes (designated A and C) found in B. napus would facilitate incorporation of novel alleles from the wider Brassica genepool in oilseed rape crop genetic improvement programmes. (biomedcentral.com)
This was based on a comprehensive sampling of the relevant genepools, including 83 accessions of A genome B. rapa L. (both wild and cultivated types), 94 accessions of B. napus and 181 accessions of C genome wild and cultivated B. oleracea L. and related species. (biomedcentral.com)
Whilst introgression of the B. napus chloroplast type in the wild and weedy B. rapa populations has been proposed by other studies, the presence of this haplotype within the two brocoletto accessions is unexplained. (biomedcentral.com)
The distribution of chloroplast haplotypes eliminate any of the C genome species as being the maternal ancestor of the majority of the B. napus accessions. (biomedcentral.com)
The presence of multiple chloroplast haplotypes in B. napus and B. rapa accessions was not correlated with nuclear genetic diversity as determined by AFLPs, indicating that such accessions do not represent recent hybrids. (biomedcentral.com)
Brassica napus (rapeseed, oilseed rape, Canola) is an oilseed crop of global economic significance. (biomedcentral.com)
Stem canker is a widespread disease of oilseed rape ( Brassica napus ), the main causal agent of which is Leptosphaeria maculans , a heterothallic ascomycete fungus. (biorxiv.org)
Rapeseed ( Brassica napus L.) is an essential source of edible oil and livestock feed, as well as a promising source of biofuel. (biomedcentral.com)
Pekinensis1
pekinensis or Brassica rapa Pekinensis Group) is a type of Chinese cabbage originating near the Beijing region of China that is widely used in East Asian cuisine. (wikipedia.org)
Brassicaceae2
By conducting a series of single- and dual-inoculation experiments of 13 plant-associated fungi targeting a Brassicaceae plant species ( Brassica rapa var. (frontiersin.org)
In the present study, a total of 99 accessions of Brassicaceae family, including 84 mustard (50 oilseed and 34 vegetable types) in China and 15 other Brassicaceae accessions were evaluated for their genetic diversity using nuclear and mitochondrial molecular markers. (mdpi.com)
Species5
As a cruciferous plant it is closely related to species of Brassica like broccoli, bok choy and cauliflower. (wikipedia.org)
The present study was planned to compare and analyse bioinformatically the HMG-CoA gene sequence of Brassica rapa with other sequences of different species. (longdom.org)
The relationships between the six major cultivated Brassica species were originally described by U [ 2 ], who associated the diploid species B. rapa , B. oleracea and B. nigra L. with the amphiploids B. juncea L., B. carinata A. Br. (biomedcentral.com)
Turnip2
Napa cabbage might have originated from natural hybridization between turnip (Brassica rapa subsp. (wikipedia.org)
Effects of salt stress on some morphological and physiological traits of Iranian turnip accessions (Brassica rapa L. (ac.ir)
Crop1
Brassica juncea is an economically important crop, including both oilseed and vegetable types. (mdpi.com)
DNA from 96 F2 lines was applied to the Brassica 60K Illumina single nucleotide polymorphism (SNP) genotyping marker array and a genome scale SNP map was generated. (canolacouncil.org)
Genes2
At the time of this project, 19 resistance (R) genes in Brassica have been identified (named as Rlm or LepR) that confer resistance to various isolates of L. maculans with matching Avirulence (Avr) genes. (canolacouncil.org)
However, the comparative transcriptome analysis of two spinach accessions with different bolting times identified genome-wide gene expression profiling and large-scale discovery of flowering-related genes from vegetative and reproductive leaves [ 13 ]. (biomedcentral.com)
Canola1
however, the genome location of the gene and associated markers were unknown, and incorporation of Rlm11 from B. rapa is challenging and time-consuming for canola breeders. (canolacouncil.org)
Haplotype1
The most prevalent haplotype (found in 79% of accessions) was not present within the C genome accessions but was found at low frequencies in B. rapa . (biomedcentral.com)
Genus1
The effect of LED light quality on the carotenoid metabolism and related gene expression in the genus Brassica. (uni-bayreuth.de)
Arabidopsis1
Natural Variation among Arabidopsis Accessions in the Regulation of Flavonoid Metabolism and Stress Gene Expression by Combined UV Radiation and Cold. (mpg.de)
Glycine1
helleri x Vitis riparia("type":"entrez-protein","attrs":"text message":"Put51191.1″,"term_id":"290578593″,"term_text message":"ADD51191.1″Put51191.1),Brassica rapa Fragaria x ananassa Glycine maximum CypClon conserved domains. (palomid529.com)
Herein, we used bioinformatic approaches to analyze the transcriptome datasets from two different accessions Viroflay and Kashan at two vegetative and reproductive stages to reveal novel lncRNAs and the construction of the lncRNA-mRNA co-expression network. (biomedcentral.com)
Resistance1
Researchers identified a B. rapa line that contained the race-specific resistance gene Rlm11. (canolacouncil.org)
Genetic1
Whilst successful, the collateral effect of these improvements has been the production of elite varieties that possess only a fraction of the genetic diversity available in the wider Brassica genepools. (biomedcentral.com)
Sequence1
The gene sequence have 925 bp coding DNA sequence and was submitted in National Centre for Biotechnology Information (NCBI) with accession Number. (longdom.org)
Grown1
Brassica microgreens grown under natural light in greenhouse conditions were found to have higher fresh and dry weight production than those cultivated in a growth chamber under LEDs. (mdpi.com)
Details1
For the quantitative check of the full total RNA, using the organic tissue pounds of 200?mg, our outcomes showed that total RNA removal by RNAzol RT produced the best yield with focus of ~800?ng/ACurcuma longa Curcuma longaCypClwas then deposited towards the NCBI (Country wide Middle for Biotechnology Details) data source with accession amount "type":"entrez-nucleotide","attrs":"text message":"KF545954.1″,"term_id":"558697952″,"term_text message":"KF545954.1″KF545954.1. (palomid529.com)
Update the tables using this key from INT to BIGINT ( https://dev.mysql.com/doc/refman/5.5/en/integer-types.html ) and to an 8-Byte number. (genomevolution.org)
Juncea2
Here, it was found that the green manures of Vicia villosa (leguminous) and Brassica juncea (non-leguminous) have different fungal structures, despite the soil originally being the same. (mdpi.com)
Brassica juncea has an excellent ability of cadmium (Cd) accumulation. (bvsalud.org)
Germplasm2
We conducted an experiment to give a comprehensive account of the diversity characterisation using >2000 accessions of Indian mustard germplasm collected from 9 different agro-ecological zones of India and evaluated for 15 quantitative traits during the year 2020 to 2023. (tropentag.de)
We used simple sequence repeat (SSR) markers that could be transferred from Manihot esculenta (cassava) to analyze the genetic relationships among 45 accessions of J. curcas from our germplasm collection. (biomedcentral.com)
Genome3
Sequence relationship analysis showed that there has been genome compaction and inheritance in the course of Brassica mitotype evolution. (biomedcentral.com)
We have sequenced four Brassica mitotypes, compared six Brassica mitotypes and suggested a mechanism for mitochondrial genome formation in Brassica , including evolutionary events such as inheritance, duplication, rearrangement, genome compaction, and mutation. (biomedcentral.com)
Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing. (phytonetworks.org)
Genotype2
On the basis of the distribution of these polymorphic alleles, the 45 accessions were classified into six groups, in which the genotype showed a correlation with geographic origin. (biomedcentral.com)
None of the natural accessions preserved in RIKEN BRC has same genotype with these lines. (riken.jp)
Crops1
The identification of CRd linked markers can be applied to marker-assisted selection in the breeding of new CR cultivars of Chinese cabbage and other Brassica crops. (frontiersin.org)
Polymorphism1
SSR diversity evaluated in a collection of 65 D. carota accessions revealed a high level of polymorphism for these selected loci, with an average of 19 alleles/locus and 0.84 expected heterozygosity. (biomedcentral.com)
Variation1
Natural Variation among Arabidopsis Accessions in the Regulation of Flavonoid Metabolism and Stress Gene Expression by Combined UV Radiation and Cold. (mpg.de)
Thirty-six EST-SSRs and 20 G-SSRs were chosen to analyze the genetic diversity among 45 J. curcas accessions. (biomedcentral.com)
Finally, we used the transferable markers to analyze the genetic diversity of our collection of J. curcas accessions. (biomedcentral.com)
Markers1
In total, 187 out of 419 expressed sequence tag (EST)-SSR and 54 out of 182 genomic (G)-SSR markers from cassava were polymorphic among the J. curcas accessions. (biomedcentral.com)
Analyze1
Here, we selected Brassica as an evolutionary clade in which to analyze the evolutionary relationships of Brassica mitotypes by sequencing. (biomedcentral.com)