ProteobacteriaFirmicutesDecreased the relative abundanceGemmatimonadetesGeneraMicrobiotaCyanobacteriaTaxonomic DiversityDiversityRichnessMicrobial groupsCompositionPseudomonasSoilFungalFunctionalAccumulationGenesOrganicPotentialMarineArticleWide rangeHighestBacteroidetesAcidobacteriaVerrucomicrobiaPhylumLower abundancePrevotellaAlphaproteobacteriaDiversityNegativelySignificantly increasedArchaeaRelativeBacteriaFungiTaxaMicrobial communityBacterial communitiesDysbiosisEnvironmentsGenusHealthy controlsResultsTotalMultiple
Proteobacteria5
- These studies have found that, like marine sponges, freshwater sponges are primarily populated by Proteobacteria, Bacteroidetes, and Actinobacteria, though the resident microbial communities still differ substantially from those of marine sponges [ 5 ]. (nature.com)
- Proteobacteria, Bacteroidetes, and Actinobacteria accounted for 55.1% of taxa detected in soil, while Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria accounted for 55.35% of taxa detected in the phyllosphere. (unboundmedicine.com)
- Centenarian microbiomes had more Proteobacteria and Synergistetes and fewer Actinobacteria species than microbiomes in the other two cohorts. (the-scientist.com)
- The dominant phyla were Proteobacteria, Actinomycetes, and Firmicutes, and the relative abundance of Acidobacteria increased significantly during the episode. (aaqr.org)
- The relative abundance of Actinobacteria, Proteobacteria and Acidobacteria as well as the Shannon and Simpson indices of T2 reached their maximum at harvest stage. (springeropen.com)
Firmicutes4
- 2015 ), and Bacteroidetes and Acidobacteria were increased, while Actinobacteria and Firmicutes decreased under antibiotics exposure (Uddin et al. (researchsquare.com)
- An observational study conducted on elite male rugby players showed that athletes have a higher abundance of Firmicutes and lower levels of Bacteroidetes than non-athletes healthy controls [ 11 ]. (biomedcentral.com)
- In the children with diabetes, the bacterial number of Actinobacteria and Firmicutes, and the Firmicutes to Bacteroidetes ratio were all significantly decreased, with the quantity of Bacteroidetes significantly increased with respect to healthy children. (biomedcentral.com)
- Decreased Firmicutes and increased Bacteroidetes abundances in rats with LDA-induced small intestinal injury were revealed. (hindawi.com)
Decreased the relative abundance1
- Low FODMAP diet increased Actinobacteria richness and diversity, and high FODMAP diet decreased the relative abundance of bacteria involved in gas consumption. (medscape.com)
Gemmatimonadetes1
- Sequencing of the V3-V4 region of the bacterial 16S rRNA gene was used to find that flooding may have affected bacterial community diversity, enhanced differences among bacterial lineages profiles, and affected the relative abundance of Actinobacteria, Verrucomicrobia, and Gemmatimonadetes. (cdc.gov)
Genera6
- Moreover, Verticillium was correlated in abundances with 5 fungal and 6 bacterial genera. (unboundmedicine.com)
- The genera Enterobacter, Pseudomonas (1.3% and 0.5%), and Bacteroides (6.4%) were evaluated in small percentage abundance too. (muni.cz)
- Changes in the relative abundance of eighteen genera were correlated to changes of twenty environmental factors grouped in physical features, sport-related features, and dietary features. (biomedcentral.com)
- Additionally, marked differences in the relative abundances of the 22 detected genera were observed between the three sampling stages: The dominant genera were Rubellimicrobium and Paracoccus prior to the arrival of the dust but became Deinococcus and Chroococcidiopsis during the invasion and then Clostridium and Deinococcus afterward. (aaqr.org)
- In our study, we analyzed the impact of host genetics on composition of the ileum microbiota and the relationship of the relative abundance of ileal bacterial genera with phosphorus utilization and related quantitative traits in Japanese quail. (biomedcentral.com)
- Heritabilities of the relative abundance of bacterial genera were estimated and quantitative trait locus (QTL) linkage mapping for the host was conducted for the heritable genera. (biomedcentral.com)
Microbiota2
- Shotgun metagenomes and metagenome-assembled genomes further revealed that freshwater sponge-associated bacteria share many genomic similarities with marine sponge microbiota, including an abundance of defense-related proteins (CRISPR, restriction-modification systems, and transposases) and genes for vitamin B12 production. (nature.com)
- Most metabolic processes were distributed widely throughout the digestive tract microbiota, with variations in metagenomic abundance between body habitats. (biomedcentral.com)
Cyanobacteria4
- g-C 3 N 4 lightly increased the percentage of relative abundance of Cyanobacteria . (researchsquare.com)
- The relative abundance of Cyanobacteria , which is harmful, increased during dust. (aaqr.org)
- Notably, the relative abundance of Cyanobacteria , which is known to cause hepatotoxicity and promote tumor growth in humans, grew substantially during the event. (aaqr.org)
- Species from Betaproteobactera, Gammaproteobacteria and Bacilli were enriched in urban schools, and species from Actinobacteria and Cyanobacteria were enriched in rural schools. (biomedcentral.com)
Taxonomic Diversity1
- In this study, we assessed CO 2 emissions, litter bag decomposition rates, bacterial and archaeal abundance, and taxonomic diversity under different organic amendments at two different experimental sites in Zambia. (researchsquare.com)
Diversity4
- Diversity and Abundance of the Bacterial Community of the Red Macroalga Porphyra umbilicalis: Did Bacterial Farmers Produce Macroalgae? (plos.org)
- Fungal and bacterial communities in soils had some difference in alpha-diversity, relative abundance, structure and taxonomic composition, but microbial groups showed similarity in the same habitat, despite different sampling sites. (unboundmedicine.com)
- Salinity significantly affected root microbiome beta-diversity according to weighted abundances (p = 0.032) but had no significant effect on the relative abundances of microbial taxa (p = 0.568). (unboundmedicine.com)
- We assessed the fungal abundance, composition and diversity among soybean rotation, maize rotation and wheat rotation systems and among long-term continuous cropping systems of soybean, maize and wheat as the effect of crop types on fungal community structure. (chinaagrisci.com)
Richness1
- Three-level logistic regression was performed between microbial richness/abundance/functional pathways and the occurrence of asthma and rhinitis symptoms. (biomedcentral.com)
Microbial groups1
- 2019 ). TC also residues would significantly inhibit sediment N and C cycling rates and reduce the abundance of functional microbial groups (He et al. (researchsquare.com)
Composition3
- PERMANOVA for repeated measures was used to test pre-post differences in the relative abundance of all taxonomic levels, and correlations between variations in microbial composition and physical and dietary features were also assessed. (biomedcentral.com)
- The compound water retention agent may regulate soil nutrient content and accelerate plant nutrient accumulation by regulating soil water content and soil microbial abundance composition. (springeropen.com)
- The fungal abundance and composition were measured by quantitative real-time PCR and Illumina MiSeq sequencing. (chinaagrisci.com)
Pseudomonas1
- Si-added soil harbored a lower abundance of Fusarium , Pseudomonas , and Faecalibacterium . (chinaagrisci.com)
Soil5
- By incorporating data on soil properties into the microbiome analysis, we accounted for experimental noise with a novel method and were able to observe the negative correlation between the abundance of Arthrobacter and plant growth. (nature.com)
- Notably, in these studies, Actinobacteria strains were enriched in both bulk soil and even more enriched in roots. (nature.com)
- Verticillium abundance was significantly and positively correlated with AN, but negatively correlated with soil OM, AK and pH. (unboundmedicine.com)
- However, organic amendments have a significant potential to enhance microbial abundance and consequently sequester soil C in the Kabwe site. (researchsquare.com)
- The results revealed that long-term continuous soybean cropping increased the soil fungal abundance compared with soybean rotation, and the fungal abundance was decreased in long-term continuous maize cropping compared with maize rotation. (chinaagrisci.com)
Fungal1
- Given the abundance in indoor environments and industrial utilization of V. victoriae, these results highlight the importance to investigate the impact of frequently detected fungal organisms on the pulmonary response following inhalational exposure. (cdc.gov)
Functional1
- Furthermore, potential consequences for community functioning were assessed based on 16S V4 rRNA gene profiles by indirectly inferring the abundance of functional genes based on results obtained with Piphillin. (unboundmedicine.com)
Accumulation1
- Actinobacteria), may contribute to the accumulation of root-derived organic matter in northern hardwood forest soils. (confex.com)
Genes1
- But what Honda found much more intriguing were the results of a metagenome analysis, which revealed increased abundance of bile-acid-inducible genes in the 100-year-old-plus age group. (the-scientist.com)
Organic1
- The organic amendments increased CO 2 emissions with increased bacterial and archaeal abundance in the Kabwe site, while no impacts were shown in the Lusaka site. (researchsquare.com)
Potential2
- however, these findings suggest that micronutrient administration could be used as a safe, therapeutic method to modulate Bifidobacterium abundance, which could have potential implications for modulating and regulating ADHD behaviour. (fabresearch.org)
- There were 11 potential pathogen and 11 potential biocontrol fungi identified, and the relative abundance of most of the potential pathogenic fungi increased during the long-term continuous cropping of all three crops. (chinaagrisci.com)
Marine1
- The study reveals that most of these NPs are derived from marine actinobacteria followed by terrestrial and endophytic actinobacteria, respectively. (frontiersin.org)
Article1
- Is the Subject Area "Actinobacteria" applicable to this article? (plos.org)
Wide range1
- Actinobacteria are known to be prolific producers of a wide range of bioactive NPs, and scientific evidence highlights their important protective role against CRC. (frontiersin.org)
Highest1
- Overall, the predictive abundances indicate that, functionally, the rhizosphere bacteria had the highest gene abundances and that salinity and drought affected the above- and belowground microbiomes differently. (unboundmedicine.com)
Bacteroidetes13
- At week six, over 80% of the mi-crobiome of the four digesters was composed of Actinobacteria, Proteobacteria, and Firmicutes, with less than 10% Euryarchaeota and Bacteroidetes. (usda.gov)
- The phylum level analysis shows that the pooled proportions of Firmicutes , Proteobacteria , Bacteroidetes , Actinobacteria , and Crenarchaeota were determined among tuberculosis patients and healthy controls. (springer.com)
- Acidobacteria , Actinobacteria , Bacteroidetes , Firmicutes , Verrucomicrobia and α - and δ-Proteobacteria had significant seasonal variation under warming, while only Gemmatimonadetes , δ-Proteobacteria and Chloroflexi showed seasonal changes in the control. (confex.com)
- The results revealed that the endophytic root microbiome in bananas is dominated by Proteobacteria and Bacteroidetes followed to a lesser extent by Actinobacteria. (cgiar.org)
- 8. Helicobacter pylori eradication with bismuth quadruple therapy leads to dysbiosis of gut microbiota with an increased relative abundance of Proteobacteria and decreased relative abundances of Bacteroidetes and Actinobacteria. (nih.gov)
- Human microbiota composition comprises approximately 1,000 species, where bacteria are considered the main constituents corresponding to the five main phyla: Bacteroidetes, Firmicutes, Actinobacteria, Proteobacteria, and Verrucomicrobia. (xiahepublishing.com)
- Different OTUs belonging to the phyla Actinobacteria, Bacteroidetes, Chloroflexi, Gemmatimonadetes and Proteobacteria were revealed as salttolerant. (ugr.es)
- The main phyla identified in the wastewater were Proteobacteria, Bacteroidetes, Chloroflexi, Planctomycetes and Actinobacteria. (csic.es)
- Among the microbial communities, a decreased abundance of Acidobacteria and increased abundances of Proteobacteria and Bacteroidetes were found with the increase in monocropping years of S. flavescens . (biomedcentral.com)
- Furthermore, at the level of phylum, propionate increased the abundance of Bacteroidetes and reduced the abundance of Firmicutes. (omicsdi.org)
- Among AS to which UV radiation is added, Bacteroidetes, Proteobacteria, Actinobacteria and Firmicutes are the advantages. (mendeley.com)
- Prokaryotic microbial assemblages were dominated by Proteobacteria, Bacteroidetes, and Actinobacteria. (aber.ac.uk)
- More differences in the microbial profile at both the phylum (Actinobacteria Firmicutes, and Bacteroidetes) and genus level (Bacteroides and Bifidobacterium) were noted when extraction was with the QIAamp DNA Stool Mini Kit compared to the other three methods. (nih.gov)
Acidobacteria1
- Straw return resulted in significant increases in relative abundances of Proteobacteria , Nitrospirae , and Actinobacteria and significant decrease in that of Acidobacteria . (chinacrops.org)
Verrucomicrobia2
- At week 23, the digester microbiomes were more diverse with Spirochaetes, Synergistetes, and Verrucomicrobia increasing in proportion and the abundance of Actinobacteria decreasing. (usda.gov)
- Sequencing of the V3-V4 region of the bacterial 16S rRNA gene was used to find that flooding may have affected bacterial community diversity, enhanced differences among bacterial lineages profiles, and affected the relative abundance of Actinobacteria, Verrucomicrobia, and Gemmatimonadetes. (cdc.gov)
Phylum1
- This is particularly noteworthy for the phylum Actinobacteria, and more so in the homonym class, commonly known as actinomycetes and hereafter referred to as actinobacteria. (frontiersin.org)
Lower abundance2
- In contrast, compared with participants without diabetes, participants with diabetes not taking metformin had higher relative abundance of Clostridiaceae 02d06 and a distinct operational taxonomic unit of Prevotella and a lower abundance of Enterococcus casseliflavus . (diabetesjournals.org)
- Interestingly, the samples of the fast-deposited bright sediment showed a rank function of OTU abundances with disproportional values in the lower abundance range. (tu-ilmenau.de)
Prevotella1
- Prevotella and Bacteroides counts were increased, while Turicibacter abundance was decreased at the level of genus. (omicsdi.org)
Alphaproteobacteria1
- Phylotypes of Alphaproteobacteria and Actinobacteria present in warm seasons were different from those in cold seasons. (stroudcenter.org)
Diversity5
- However, the discovery of novel compounds from terrestrial actinobacteria is reaching a stagnation point, impelling the scientific community to look for new chemical diversity in much less explored environments, such as marine ecosystems ( Bhatnagar and Kim, 2010 ). (frontiersin.org)
- Using metagenomics, we found that OCP-contaminated soils displayed a lower bacterial, but higher diversity of viruses that harbored a higher relative abundance of AMGs linked to pesticide degradation and metabolism. (nature.com)
- The results showed that the rectal bacteria diversity and Gram-positive bacteria abundance in lysozyme treatment was significantly higher than none-lysozyme treatment. (researchsquare.com)
- We observed - decreasing with depth - the highest bacterial abundances and microbial diversity at vegetated sites. (copernicus.org)
- In contrast, successive dry conditions moderately influence the abundance and diversity of both communities compared to a single dry event. (ufz.de)
Negatively1
Significantly increased2
- A detail analysis revealed that abundance of Gram-positive bacteria significantly increased in samples treated with lysozyme. (researchsquare.com)
- The relative abundance of species with reported stress-tolerant and biofilm-forming abilities significantly increased, with a consortium of changes in predicted biological pathways, including shifts in degradation pathways of intermediate compounds, while the correlation of top ASVs and genus with performance indicators showed diversifications in microbiota responsible for toluene degradation. (biomedcentral.com)
Archaea1
Relative2
- Meanwhile, the relative abundance of Bacillus was decreased, while two zoonotic pathogens, Salmonella and Listeria, were enriched by manure amendments. (usda.gov)
- Metformin, a blood glucose regulator, was reported to increase the relative abundance of LPS-producing Gram-negative gut bacteria ( 22 ). (spandidos-publications.com)
Bacteria3
- In soils, viruses reach abundances of up to ~10 9 per gram of soil leading to frequent encounters with their host bacteria [ 13 ]. (nature.com)
- The consumption of foods high in fat increases the abundance of LPS-containing Gram-negative bacteria in the gut at the expense of Gram-positive bacteria ( 20 , 21 ). (spandidos-publications.com)
- Such difference may be caused by Gram-positive bacteria, since different DNA extraction method can result in a huge difference in abundance of Gram-positive bacteria. (researchsquare.com)
Fungi1
Taxa1
- A taxon-level analysis suggested an expansion of rare taxa, Actinobacteria , with a decrease in abundant taxa in patients with RA compared with controls. (biomedcentral.com)
Microbial community1
- Different doses of UV radiation can significantly change the microbial community structure of AS and the abundance of key functional enzymes. (mendeley.com)
Bacterial communities1
- Temporal variations in bacterial communities were best explained by changes of chlorophyll a (Chl a ) and water temperature, but dissolved oxygen, ammonia, nitrite and nitrate, and viral abundance also contributed significantly to the bacterial seasonal variations. (stroudcenter.org)
Dysbiosis1
- These observations suggest dysbiosis in RA patients resulting from the abundance of certain rare bacterial lineages. (biomedcentral.com)
Environments1
- Given the abundance in indoor environments and industrial utilization of V. victoriae, these results highlight the importance to investigate the impact of frequently detected fungal organisms on the pulmonary response following inhalational exposure. (cdc.gov)
Genus1
- At the genus level, feces stored in DESS for 2 weeks at room temperature had higher abundance of Ochrobactrum and specimens stored in guanidine thiocyanate for 3 weeks at 4°Chad higher abundance of Peptoniphilus. (nih.gov)
Healthy controls1
- WA animals showed increased bacterial richness and abundance compared to healthy controls (HC). (nih.gov)
Results1
- Taking into account these results, NaCl content was an important driver of the abundance of microbial populations and the bacterial community structure in the analysed industrial facilities. (ugr.es)
Total1
- the core community of the WWtp bioreactor was also studied, where a small fraction of sequence variants constituted a large fraction of the total abundance. (csic.es)
Multiple1
- For this reason, in the last decades, multiple NP discovery efforts have focused on actinobacteria, especially those from terrestrial sources. (frontiersin.org)