Structure of yeast phenylalanine transfer RNA at 2.5 A resolution.
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The x-ray analysis of the monoclinic form of yeast tRNAPhe has been taken to a resolution of 2.5 A by the method of isomorphous replacement. The model proposed at 3 A has been confirmed and extended to reveal additional features of the tertiary structure and of the stereochemistry. An extensive hydrogen bonding network is described involving specific interactions between bases and the ribose-phosphate backbone. The structure of a G-U base pair has been solved. (+info)
Temperature-sensitive mutants of the yeast fatty-acid-synthetase complex.
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By genetic complementation analysis, 88 independently isolated temperature-sensitive fatty acid synthetase mutants have been assigned to the six different fas-complementation groups II (fas 1), III (fas 1), Vb (fas 1), VI (fas 2), VIII (fas 2) and IX (fas 2). The complementation groups Va, Vc, Vd, IV and VII observed among nonconditional fas-mutants have not been found among the temperature-sensitive strains studied. From the failure to detect pantetheine-deficient conditional fas-mutants it is concluded that the yease acyl-carrier protein has an exceptionally stable tertiary structure. Furthermore, the lack of temperature-sensitive mutants of complementation group IV possibly indicates that this group specifically represents only nonsense and frameshift mutations. Almost half of the temperature-sensitive fas 1 and fas 2 mutants studied exhigited non-complementing characteristics. These results confirm the existence of non-complementing fas1 and fas2 missense mutations. From this it is concluded that both fatty acid synthetase loci encode multifunctional polypeptide chains rather than several monofunctional component enzymes. The possible existence of an independent acyl-carrier protein, as suggested by the genetic data reported in this study, is discussed. With 10 different temperature-sensitive fas1 and fas2 mutants the dependence of cellular growth rates on growth temperature and fatty acid supplementation was determined. With all mutants studied fatty-acid-independent growth was completely suppressed at non-permissive temperatures (34 -37 degrees C). In fatty-acid-supplemented media, however, these mutants exhibited the same growth characteristics as wild-type yeast cells. In contrast to this, wild-type yeast growth was found to be fatty-acid-independent at all temperatures studied. Other than in vivo, the purified fatty acid synthetase isolated from five different temperature-sensitive fas1 and fas2 mutants exhibited in vitro no increased thermolability compared to the wild-type enzyme. From this it is concluded that the specific conformation of fatty acid synthetase subunits either forms only at the ribosomal level during translation, or that this conformation is stabilized by the assembly of subunits into the multienzyme complex structure. (+info)
Structural analysis of the protein/lipid complexes associated with pore formation by the bacterial toxin pneumolysin.
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Pneumolysin, a major virulence factor of the human pathogen Streptococcus pneumoniae, is a soluble protein that disrupts cholesterol-containing membranes of cells by forming ring-shaped oligomers. Magic angle spinning and wideline static (31)P NMR have been used in combination with freeze-fracture electron microscopy to investigate the effect of pneumolysin on fully hydrated model membranes containing cholesterol and phosphatidylcholine and dicetyl phosphate (10:10:1 molar ratio). NMR spectra show that the interaction of pneumolysin with cholesterol-containing liposomes results in the formation of a nonbilayer phospholipid phase and vesicle aggregation. The amount of the nonbilayer phase increases with increasing protein concentration. Freeze-fracture electron microscopy indicates the coexistence of aggregated vesicles and free ring-shaped structures in the presence of pneumolysin. On the basis of their size and analysis of the NMR spectra it is concluded that the rings are pneumolysin oligomers (containing 30-50 monomers) complexed with lipid (each with 840-1400 lipids). The lifetime of the phospholipid in either bilayer-associated complexes or free pneumolysin-lipid complexes is > 15 ms. It is further concluded that the effect of pneumolysin on lipid membranes is a complex combination of pore formation within the bilayer, extraction of lipid into free oligomeric complexes, aggregation and fusion of liposomes, and the destabilization of membranes leading to formation of small vesicles. (+info)
Intercalative binding of ellipticine to DNA.
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Ellipticine (NSC 71795), a plant alkaloid with antitumor activity, is a weakly basic polycyclic molecule with dimensions similar to those of proflavin. Like proflavin, ellipticine exhibits hypocromic and bathochromic changes in absorption spectrum in the presence of DNA. It binds preferentially to helical DNA by intercalation, but the strength of binding is substantially greater than that of proflavin. The evidence for intercalation is based on effects on the sedimentation and viscosity of sheared DNA fragments, removal and reversal of the supercoiling of closed circular DNA, and electric dichroism measurements. The sedimentation and viscosity changes are quantitatively similar to those produced by proflavin. The unwinding angle on binding to supercoiled DNA is estimated to be 7.9 degrees, similar to that of proflavin. Electric dichroism shows the plane of the bound ellipticine molecule to be oriented parallel (plus or minus 7 degrees) to the plane of the bases in helical DNA. Ellipticine differs from proflavin in that it is uncharged at neutral pH and becomes protonated under mildly acid conditions. This feature may influence the intracellular distribution of the drug. Ellipticine bound to DNA is probably in its protonated form. (+info)
Functional rescue of the nephrogenic diabetes insipidus-causing vasopressin V2 receptor mutants G185C and R202C by a second site suppressor mutation.
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Mutations in the gene of the G protein-coupled vasopressin V2 receptor (V2 receptor) cause X-linked nephrogenic diabetes insipidus (NDI). Most of the missense mutations on the extracellular face of the receptor introduce additional cysteine residues. Several groups have proposed that these residues might disrupt the conserved disulfide bond of the V2 receptor. To test this hypothesis, we first calculated a structure model of the extracellular receptor domains. The model suggests that the additional cysteine residues may form a second disulfide bond with the free, nonconserved extracellular cysteine residue Cys-195 rather than impairing the conserved bond. To address this question experimentally, we used the NDI-causing mutant receptors G185C and R202C. Their Cys-195 residues were replaced by alanine to eliminate the hypothetical second disulfide bonds. This second site mutation led to functional rescue of both NDI-causing mutant receptors, strongly suggesting that the second disulfide bonds are indeed formed. Furthermore we show that residue Cys-195, which is sensitive to "additional cysteine" mutations, is not conserved among the V2 receptors of other species and that the presence of an uneven number of extracellular cysteine residues, as in the human V2 receptor, is rare among class I G protein-coupled receptors. (+info)
Junctional structures in the midgut cells of lepidopteran caterpillars.
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The junctional structures present between the midgut cells of 3 lepidopteran caterpillars have been examined using freeze-etching, conventional staining and lanthanum tracer techniques. The bonding junction present in this type of tissue is the so-called continuous junction. Septa have only occassionally been reported in conventionally strained cross-sections of these junctions. During the present study septa have been observed in such sections but were more readily located in tissue treated with lanthanum tracer. Tangential sections of lanthanum-impregnated tissue show that these septa are parallel-sided, in contrast to the honeycomb appearance of the septa in septate junctions. The septa in freeze-etch replicas of glutaraldehyde-fixed tissue often show continuous rods on one membrane face, suggesting that the continuous junction may be more akin to the tight junction than to the normal septate junction. However, freeze-etch replicas of unfixed tissue appear much more like replicas of normal septate junctions. The main differences between septate and continuous junctions appear to be that the inter-membrane septa of the continuous junction are parallel-sided in tangential section, as against the honeycomb appearance of the septate junction, and that the particles which delineate the septa in freeze-etched preparations appear to be both somewhat differentl bonded and closer together in the continuous junction. A diagram is presented showing the internal and inter-membrane structures of the 2 types of junction based on the present study, and suggesting a possible explanation of the fact that septa are more readily seen in cross-sections of septate junctions than in continuous junctions. As septa are present in both types of junction, and because their freeze-etch appearances are not very different, it is suggested that the two types of septate junction be called 'smooth septate' and 'pleated septate' junctions, to indicate their characteristic appearances in tangential section. (+info)
The structure of isometric capsids of bacteriophage T4.
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The three-dimensional structure of DNA-filled, bacteriophage T4 isometric capsids has been determined by means of cryoelectron microscopy and image reconstruction techniques. The packing geometry of protein subunits on the capsid surface was confirmed to be that of the triangulation class T = 13. The reconstruction clearly shows pentamers, attributed to capsid protein gp24*, surrounded by hexamers of the major capsid protein, gp23*. Positions of the accessory proteins, Hoc and Soc, are also clearly delineated in the surface lattice. The Hoc protein is the most prominent surface feature and appears as an extended molecule with a rounded base from which a thin neck and a globular head protrude. One Hoc molecule associates with each hexamer. Nearly continuous "ridges" are formed at the periphery of the gp23* hexamers by an association of 12 Soc molecules; however, Soc is absent along the boundaries between the hexamers and the pentamers. The duplex DNA genome forms a highly condensed series of concentric layers, spaced about 2.36 nm apart, that follow the general contour of the inner wall of the protein capsid. (+info)
Combined results from solution studies on intact influenza virus M1 protein and from a new crystal form of its N-terminal domain show that M1 is an elongated monomer.
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The amino-terminal domain of influenza A virus matrix protein (residues 1-164) was crystallized at pH 7 into a new crystal form in space group P1. This packing of the protein implies that M1(1-164) was monomeric in solution when it crystallized. Otherwise, the structure of the M1 fragment in the pH 7 crystals was the same as the monomers in crystals formed at pH 4 where crystal packing resulted in dimer formation [B. Sha and M. Luo, 1997, Nature Struct. Biol. 4, 239-244]. Analysis of intact M1 protein, the N-terminal domain, and the remaining C-terminal fragment (residues 165-252) in solution also showed that the N-terminal domain was monomeric with the same dimensions as determined from the crystal structure. Intact M1 protein was also monomeric but with an elongated shape due to the presence of the C-terminal part. Circular dichroism showed that the C-terminal part of M1 contained helical structure. A model for soluble M1 is presented, based on the assumption that the C-terminal domain is spherical, in which the N- and C-terminal domains are connected by a linker sequence which is available for proteolytic attack. (+info)