Small nuclear RNA
U1 spliceosomal RNA, U2 spliceosomal RNA, U4 spliceosomal RNA, U5 spliceosomal RNA, and U6 spliceosomal RNA. Their nomenclature ... Small nuclear RNA, RNA, Molecular genetics, Non-coding RNA, Telomeres). ... Small nuclear RNA (snRNA) is a class of small RNA molecules that are found within the splicing speckles and Cajal bodies of the ... Small+Nuclear+RNA at the U.S. National Library of Medicine Medical Subject Headings (MeSH) Small+Nucleolar+RNA at the U.S. ...
U7 small nuclear RNA
The U7 small nuclear RNA (U7 snRNA) is an RNA molecule and a component of the small nuclear ribonucleoprotein complex (U7 snRNP ... sequences of the sea urchin U7 small nuclear RNA suggest specific contacts between histone mRNA precursor and U7 RNA during RNA ... "Analysis of a sea urchin gene cluster coding for the small nuclear U7 RNA, a rare RNA species implicated in the 3' editing of ... processing defects of insertion mutant premessenger RNAs can be compensated by insertions into the U7 small nuclear RNA". Proc ...
U2 small nuclear RNA auxiliary factor 1
"Entrez Gene: U2AF1 U2 small nuclear RNA auxiliary factor 1". Zamore PD, Green MR (1989). "Identification, purification, and ... U2 small nuclear RNA auxiliary factor 1 has been shown to interact with: ASF/SF2, NXF1, RP9, SMNDC1, U2AF2, and ZRANB2. GRCh38 ... This gene encodes a small (~35 kDa) subunit which plays a critical role in RNA splicing by recognizing and binding to AG ... Lallena MJ, Martínez C, Valcárcel J, Correas I (1998). "Functional association of nuclear protein 4.1 with pre-mRNA splicing ...
Non-coding RNA
Nuclear Receptor Signaling. 5: e006. doi:10.1621/nrs.05006. PMC 1948073. PMID 17710122. Zhang J, King ML (December 1996). " ... VegT RNA, Oskar RNA, ENOD40, p53 RNA and SR1 RNA. Bifunctional RNAs have recently been the subject of a special issue of ... "Sequence analysis of RNase MRP RNA reveals its origination from eukaryotic RNase P RNA". RNA. 12 (5): 699-706. doi:10.1261/rna. ... OxyS RNA is induced in response to oxidative stress in Escherichia coli.[citation needed] The B2 RNA is a small noncoding RNA ...
Long non-coding RNA
Nickerson JA, Krochmalnic G, Wan KM, Penman S (January 1989). "Chromatin architecture and nuclear RNA". Proceedings of the ... small interfering RNAs (siRNAs), Piwi-interacting RNAs (piRNAs), small nucleolar RNAs (snoRNAs), and other short RNAs. Given ... an ncRNA repressor of RNA polymerase II transcription". RNA. 13 (4): 583-596. doi:10.1261/rna.310307. PMC 1831867. PMID ... Long non-coding RNAs (long ncRNAs, lncRNA) are a type of RNA, generally defined as transcripts more than 200 nucleotides that ...
Small nucleolar RNA TBR6
... molecule identified in Trypanosoma brucei which functions in the modification of other small nuclear RNAs (snRNAs). This type ... It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA. snoRNA TBR6 belongs to the C/D box ... Small nucleolar RNA TBR6 is a non-coding RNA (ncRNA) ... These 4 snoRNA genes are transcribed as a polycistronic RNA ... "The genes for small nucleolar RNAs in Trypanosoma brucei are organized in clusters and are transcribed as a polycistronic RNA ...
U2 spliceosomal RNA
Page for U2 spliceosomal RNA at Rfam U2 (GO template errors, Small nuclear RNA, Spliceosome, RNA splicing). ... Similar to ribosomal RNAs (rRNAs), Sm snRNAs must mediate both RNA:RNA and RNA:protein contacts and hence have evolved ... Spliceosome Small nuclear RNA U1 spliceosomal RNA Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P (2002). Molecular ... U2 spliceosomal snRNAs are a species of small nuclear RNA (snRNA) molecules found in the major spliceosomal (Sm) machinery of ...
Small nucleolar RNA TBR12
... molecule identified in Trypanosoma brucei which functions in the modification of other small nuclear RNAs (snRNAs). This type ... It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA. snoRNA TBR12 belongs to the C/D box ... Small nucleolar RNA TBR12 is a non-coding RNA (ncRNA) ... These 4 snoRNA genes are transcribed as a polycistronic RNA ... "The genes for small nucleolar RNAs in Trypanosoma brucei are organized in clusters and are transcribed as a polycistronic RNA ...
RNA-binding protein
As nuclear RNA emerges from RNA polymerase, RNA transcripts are immediately covered with RNA-binding proteins that regulate ... These non-coding RNAs include microRNAs, small interfering RNAs (siRNA), as well as spliceosomal small nuclear RNAs (snRNA). ... plays a critical role in RNA processing, RNA localization, RNA interference, RNA editing, and translational repression. All ... Matera AG, Terns RM, Terns MP (March 2007). "Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs". Nature ...
RNA splicing
November 2013). "RNA catalyses nuclear pre-mRNA splicing". Nature. 503 (7475): 229-234. Bibcode:2013Natur.503..229F. doi: ... In addition, a number of proteins including U2 small nuclear RNA auxiliary factor 1 (U2AF35), U2AF2 (U2AF65) and SF1 are ... Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA 2013;19(2):141-57. Zhang Y, Zhang XO, Chen T, et al ... Splicing is catalyzed by the spliceosome, a large RNA-protein complex composed of five small nuclear ribonucleoproteins (snRNPs ...
Small nucleolar RNA TBR4
... molecule identified in Trypanosoma brucei which functions in the modification of other small nuclear RNAs (snRNAs). This type ... It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA. snoRNA TBR4 belongs to the C/D box ... Small nucleolar RNA TBR4 is a non-coding RNA (ncRNA) ... These 4 snoRNA genes are transcribed as a polycistronic RNA ... "The genes for small nucleolar RNAs in Trypanosoma brucei are organized in clusters and are transcribed as a polycistronic RNA ...
RNA-binding protein FUS
... /TLS (FUsed in Sarcoma/Translocated in LipoSarcoma), also known as heterogeneous nuclear ... a novel RNA/ssDNA-binding protein with homology to the pro-oncoproteins TLS/FUS and EWS is associated with both TFIID and RNA ... "FUS - RNA-binding protein FUS - Homo sapiens (Human) - FUS gene & protein". www.uniprot.org. Retrieved 2019-03-13. Kino Y, ... Zinszner H, Albalat R, Ron D (November 1994). "A novel effector domain from the RNA-binding protein TLS or EWS is required for ...
Small nucleolar RNA U3
Speckmann, W; Narayanan A; Terns R; Terns MP (1999). "Nuclear retention elements of U3 small nucleolar RNA". Mol Cell Biol. 19 ... doi:10.4161/rna.6.5.9607. PMID 19875933. S2CID 13055120. Page for Small nucleolar RNA U3 at Rfam uRNADB: U3 page (archive) The ... Small nuclear RNA, All stub articles, Molecular biology stubs). ... In molecular biology, U3 snoRNA is a non-coding RNA found ... O-methylation of other RNAs. Rather, U3 is thought to guide site-specific cleavage of ribosomal RNA (rRNA) during pre-rRNA ...
Preribosomal RNA
Genes for Xenopus laevis U3 small nuclear RNA. Nucleic Acids Res. 1992;20:5435-5442. Marmier-Gourrier N, Cle´ry A, Schlotter F ... Preribosomal RNA (pre-rRNA) is the precursor to mature ribosomal RNA (rRNA), which is a component of ribosomes. Pre-rRNA is ... U3 small nucleolar RNA is essential for cleavage at sites 1, 2, and 3 in pRNA and determines which rRNA processing pathway is ... Small nucleolar RNAs (snoRNA) dictate the modifications, by base-pairing with target sites in eukaryotic pre-rRNA and may also ...
Transfer RNA
Regions in nuclear chromosomes, very similar in sequence to mitochondrial tRNA genes, have also been identified (tRNA- ... Transfer RNA (abbreviated tRNA and formerly referred to as sRNA, for soluble RNA) is an adaptor molecule composed of RNA, ... doi:10.4161/rna.27177. PMC 3917982. PMID 24351723. Shigematsu M, Honda S, Kirino Y (2014). "Transfer RNA as a source of small ... Cloverleaf model of tRNA Kim Sung-Hou Kissing stem-loop mRNA non-coding RNA and introns Slippery sequence tmRNA Transfer RNA- ...
Serrate RNA effector molecule homolog
2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130-5. ... Serrate RNA effector molecule homolog (SRRT) also known as arsenite-resistance protein 2 (ARS2) is a protein that in humans is ... The SRRT gene product plays a role in RNA-mediated gene silencing (RNAi) by miRNAs. Independently of its activity on miRNAs, it ...
RNA polymerase
Eukaryotes have multiple types of nuclear RNAP, each responsible for synthesis of a distinct subset of RNA: RNA polymerase I ... messenger RNA (mRNA); or non-coding (so-called "RNA genes"). At least four functional types of RNA genes exist: Transfer RNA ( ... RNA silencing Catalytic RNA (ribozyme) Functions as an enzymatically active RNA molecule. RNA polymerase is essential to life, ... Non-coding RNA or "RNA genes"-a broad class of genes that encode RNA that is not translated into protein. The most prominent ...
Small nucleolar RNA
... mainly ribosomal RNAs, transfer RNAs and small nuclear RNAs. There are two main classes of snoRNA, the C/D box snoRNAs, which ... SnoRNAs are commonly referred to as guide RNAs but should not be confused with the guide RNAs that direct RNA editing in ... "Cajal body-specific small nuclear RNAs: a novel class of 2′-O-methylation and pseudouridylation guide RNAs". The EMBO Journal. ... SnoRNAs are classified under small nuclear RNA in MeSH. The HGNC, in collaboration with snoRNABase and experts in the field, ...
Messenger RNA
Katahira J, Yoneda Y (27 October 2014). "Roles of the TREX complex in nuclear export of mRNA". RNA Biology. 6 (2): 149-152. doi ... A 5' cap (also termed an RNA cap, an RNA 7-methylguanosine cap, or an RNA m7G cap) is a modified guanine nucleotide that has ... The primary RNA transcript of a gene is cleaved at the poly-A addition site, and 100-200 A's are added to the 3' end of the RNA ... Transcription is when RNA is copied from DNA. During transcription, RNA polymerase makes a copy of a gene from the DNA to mRNA ...
RNA recognition motif
RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins ( ... RNA recognition motif, RNP-1 is a putative RNA-binding domain of about 90 amino acids that are known to bind single-stranded ... Keene JD, Query CC, Bentley RC (1989). "A common RNA recognition motif identified within a defined U1 RNA binding domain of the ... The largest group of single strand RNA-binding protein is the eukaryotic RNA recognition motif (RRM) family that contains an ...
RNA-binding protein database
Matera, A. Gregory; Terns, Rebecca M.; Terns, Michael P. (March 2007). "Non-coding RNAs: lessons from the small nuclear and ... RNA-binding domain (RBD, also known as RNP domain and RNA recognition motif, RRM), K-homology (KH) domain (type I and type II ... New resource catalogs RNA-binding sites of many proteins: A new online database lists the likely RNA-binding sites of more than ... RNA-binding domains included in this database are RNA recognition motif, K homology, CCCH zinc finger, and more domains. As of ...
Small nucleolar RNA sR-tMet
Orphaned articles from August 2017, All orphaned articles, Small nuclear RNA). ... in Haloferax volcanii is guided by a box C/D RNA containing unique features". RNA Biol. 8 (5): 782-91. doi:10.4161/rna.8.5. ... In molecular biology, small nucleolar RNA sR-tMet is a C/D box snoRNA. It was identified in the genome of the haloarchaeon ...
5S ribosomal RNA
Maraia RJ, Intine RV (2002). "La protein and its associated small nuclear and nucleolar precursor RNAs". Gene Expression. 10 (1 ... The 5S ribosomal RNA (5S rRNA) is an approximately 120 nucleotide-long ribosomal RNA molecule with a mass of 40 kDa. It is a ... Page for 5S ribosomal RNA at Rfam 5SData Archived 2010-04-27 at the Wayback Machine 5S+Ribosomal+RNA at the U.S. National ... Binding between 5S rRNA and TFIIIA serves to both repress further transcription of the 5S RNA gene and stabilize the 5S RNA ...
LSM5
"Entrez Gene: LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)". Rual JF, Venkatesan K, Hao T, et al. (2005 ...
LSM7
"Entrez Gene: LSM7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)". Conte N, Delaval B, Ginestier C, Ferrand A, ...
Small nuclear ribonucleoprotein polypeptide E
"Cytoplasmic assembly of small nuclear ribonucleoprotein particles from 6 S and 20 S RNA-free intermediates in L929 mouse ... Small nuclear ribonucleoprotein E is a protein that in humans is encoded by the SNRPE gene. Small nuclear ribonucleoprotein ... "Cytoplasmic assembly and nuclear accumulation of mature small nuclear ribonucleoprotein particles". The Journal of Biological ... Urlaub H, Raker VA, Kostka S, Lührmann R (January 2001). "Sm protein-Sm site RNA interactions within the inner ring of the ...
Small nuclear ribonucleoprotein polypeptide F
"Cytoplasmic assembly of small nuclear ribonucleoprotein particles from 6 S and 20 S RNA-free intermediates in L929 mouse ... Small nuclear ribonucleoprotein F is a protein that in humans is encoded by the SNRPF gene. Small nuclear ribonucleoprotein ... RNA. 10 (6): 929-41. doi:10.1261/rna.7320604. PMC 1370585. PMID 15146077. Lehner B, Sanderson CM (July 2004). "A protein ... "Cytoplasmic assembly and nuclear accumulation of mature small nuclear ribonucleoprotein particles". The Journal of Biological ...
Inositol monophosphatase 2
RNA. 9 (12): 1532-41. doi:10.1261/rna.5143303. PMC 1370506. PMID 14624008. Sjøholt G, Ebstein RP, Lie RT, et al. (2005). " ... Azzouz TN, Schumperli D (2004). "Evolutionary conservation of the U7 small nuclear ribonucleoprotein in Drosophila melanogaster ...
HNRNPA0
The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with ... Heterogeneous nuclear ribonucleoprotein A0 is a protein that in humans is encoded by the HNRNPA0 gene. This gene belongs to the ... The protein encoded by this gene has two repeats of quasi-RRM domains that bind RNAs, followed by a glycine-rich C-terminus. ... Myer VE, Steitz JA (Dec 1995). "Isolation and characterization of a novel, low abundance hnRNP protein: A0". RNA. 1 (2): 171-82 ...
Small nuclear ribonucleoprotein D2
Urlaub H, Raker VA, Kostka S, Lührmann R (2001). "Sm protein-Sm site RNA interactions within the inner ring of the spliceosomal ... Small nuclear ribonucleoprotein D2 has been shown to interact with DDX20, Small nuclear ribonucleoprotein D1, Small nuclear ... It belongs to the small nuclear ribonucleoprotein core protein family, and is required for pre-mRNA splicing and small nuclear ... Small nuclear ribonucleoprotein Sm D2 is a protein that in humans is encoded by the SNRPD2 gene. ...