... (MLST) is a technique in molecular biology for the typing of multiple loci, using DNA sequences of ... Spratt, Brian G (1999). "Multilocus sequence typing: molecular typing of bacterial pathogens in an era of rapid DNA sequencing ... "Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone". Infect Immun. 69 (4): ... "Molecular Typing of Selected Enterococcus faecalis Isolates: Pilot Study Using Multilocus Sequence Typing and Pulsed-Field Gel ...

Multilocus sequence typing (MLST) is the sequencing of numerous loci to diagnose an organism by comparing DNA sequences to a ... "Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria". Journal of Clinical Microbiology. 50 (4): 1355-1361. doi: ... Single-locus sequence typing (SLST) is the sequencing of a single locus of an organism to produce data that can be used for ... Belén, Ana; Pavón, Ibarz; Maiden, Martin C.J. (2009). "Multilocus Sequence Typing". Molecular Epidemiology of Microorganisms. ...

"First multi-locus sequence typing scheme for Arcobacter spp". BMC Microbiology. 9 (1): 196. doi:10.1186/1471-2180-9-196. ISSN ... It is Gram-negative, and its type strain is LA31BT(=ATCC BAA-1022T =CIP 108450T). Donachie, S. P. (2005). "Arcobacter ... LPSN "Arcobacter halophilus" at the Encyclopedia of Life Type strain of Arcobacter halophilus at BacDive - the Bacterial ...

Urwin, R; Maiden, MC (2003). "Multi-locus sequence typing: a tool for global epidemiology". Trends Microbiol. 11 (10): 479-87. ... Urwin, R; Maiden, MC (2003). "Multi-locus sequence typing: a tool for global epidemiology". Trends Microbiol. 11 (10): 479-87. ... One such approach, sometimes called 'multi-locus typing', has been used to deduce phylogenic trees for organisms that exchange ... This is the main conclusion of a 2005 study of more than 40 complete microbial genomic sequences by Fan Ge, Li-San Wang, and ...

... they can be classified by multilocus sequence typing. NTHi strains are considered to be part of the normal human flora in the ... Types a, e, and f have been isolated infrequently, while types d and c are rarely isolated. Unencapsulated strains are more ... The six generally recognized types of encapsulated H. influenzae are: a, b, c, d, e, and f. H. Influenzae type b, also known as ... "Haemophilus influenzae type B (HiB)". Health Topics A to Z. Retrieved 2011-03-29. Jin Z, Romero-Steiner S, Carlone GM, Robbins ...

2012). "Short read sequence typing (SRST):multi-locus sequence types from short reads". BMC Genomics. 13: 388. doi:10.1186/1471 ... 2012). "Multilocus sequence typing of total-genome-sequenced bacteria". Journal of Clinical Microbiology. 50 (4): 1355-1366. ... pulsed-field gel electrophoresis or multilocus sequence typing. A complication of this broad variety of techniques is the ... In addition, whole genome sequencing data may be used to back calculate to the different pre-whole genome sequencing genotyping ...

Achtman was one of the inventors of multilocus sequence typing. His research has been funded by the Biotechnology and ... "Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica". PLOS Pathogens. 8 (6): e1002776. doi: ... "Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms ... 2003). "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella ...

Leon, A; Pronost, S; Fortier, G; Andre-Fontaine, G; Leclercq, R (Feb 2010). "Multilocus sequence analysis for typing Leptospira ... NCBI Taxonomy Type strain of Leptospira kirschneri at BacDive - the Bacterial Diversity Metadatabase v t e (Articles with short ...

This approach is referred to as multi-locus sequence typing (MLST). Similar to single-locus typing, MLST requires the selection ... Sequencing the entire genome is the maximal extent of multi-locus typing, in that all possible loci are covered. Having whole ... such data are usually not available to use as background sequences. The incorporation of different types of sequences (clonal ... Before whole-genome sequencing was cost-effective, targeting a specific part of the pathogen genome (a.k.a. single-locus typing ...

Inference of Population Structure from Multilocus Sequence Typing Data". Frontiers in Microbiology. 7: 1599. doi:10.3389/fmicb. ... Staphylococcus pseudintermedius was first identified as a novel species in 2005 using 16S rRNA sequencing of the tRNA ... "Staphylococcus pseudintermedius 16S rRNA gene, type strain LMG 22219T". 2005-08-15. "Notification that new names and new ... "Staphylococcus pseudintermedius" at the Encyclopedia of Life Type strain of Staphylococcus pseudintermedius at BacDive - the ...

"Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with clinical ... "Diversity of the Cronobacter Genus as Revealed by Multilocus Sequence Typing". Journal of Clinical Microbiology. 50 (9): 3031- ... Its type strain is CDC 1058-77T (=LMG 23826T =DSM 18702T). Iversen, C.; Mullane, N.; McCardell, B.; Tall, B. D.; Lehner, A.; ... LPSN "Cronobacter malonaticus" at the Encyclopedia of Life Type strain of Cronobacter malonaticus at BacDive - the Bacterial ...

However multilocus sequence typing has shown that the majority of neonatal meningitis cases in the past 30 years, across 6 ... 2009). "Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with ... multilocus sequence typing (MLST), f-AFLP, automated ribotyping. This resulted in the classification of E. sakazakii as a new ... "Diversity of the Cronobacter genus as revealed by multilocus sequence typing". Journal of Clinical Microbiology. 50 (9): 3031-9 ...

"Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica". PLOS Pathogens. 8 (6): e1002776. doi: ...

... multilocus sequence typing, and, increasingly, whole genome sequencing. Historically, salmonellae have been clinically ... 2012). "Multilocus sequence typing as a replacement for serotyping in Salmonella enterica". PLOS Pathogens. 8 (6): e1002776. ... multilocus sequence typing, and multiplex-PCR-based methods. In 2005, a third species, Salmonella subterranea, was proposed, ... rev., as the type and only species of the genus Salmonella". Int. J. Syst. Bacteriol. 37 (4): 465-468. doi:10.1099/00207713-37- ...

... phylogenetic analysis using multilocus enzyme electrophoresis and typing with three insertion sequences". J Bacteriol. 179 (21 ... Type strain of Bordetella parapertussis at BacDive - the Bacterial Diversity Metadatabase v t e (CS1: long volume value, ...

"Fine-Scale Phylogeographic Structure of Borrelia lusitaniae Revealed by Multilocus Sequence Typing". PLOS ONE. 3 (12): 1-13. ... B. lusitaniae is tick-borne; he type strain is PotiB2. It can be pathogenic, being involved in cases of Lyme borreliosis. A ... by 16S Ribosomal DNA Sequence Analysis". International Journal of Systematic Bacteriology. 47 (4): 921-925. doi:10.1099/ ... NCBI Taxonomy Browser - Borrelia UniProct Identification Type strain of Borrelia lusitaniae at BacDive - the Bacterial ...

Ahmed's group has developed a widely used multilocus sequence typing scheme for species level identification of pathogenic ... "Multilocus sequence typing method for identification and genotypic classification of pathogenic Leptospira species". Annals of ... Ahmed has also worked extensively on the nomenclature, taxonomic status, genome sequencing and functional characterization of ...

For the precise identification of Pantoea agglomerans non-culture based methods such as Multilocus sequence typing (MLST) or ... "Phylogeny and Identification of Pantoea Species and Typing ofPantoea agglomeransStrains by Multilocus Gene Sequencing". Journal ... Type strain of Pantoea agglomerans at BacDive - the Bacterial Diversity Metadatabase (CS1 maint: DOI inactive as of August 2023 ... Lim, Jeong-A; Lee, Dong Hwan; Kim, Byoung-Young; Heu, Sunggi (2014-10-20). "Draft genome sequence ofPantoea agglomeransR190, a ...

Morehouse EA, James TY, Ganley AR, Vilgalys R, Berger L, Murphy PJ, Longcore JE (February 2003). "Multilocus sequence typing ... Sequencing the ITS barcode of ten samples with classical Sanger as well as with Illumina next-generation sequencing techniques ... In Sanger sequencing, this will cause ITS sequence reads of different lengths to superpose each other, potentially rendering ... For the remaining 25% of the samples, no ITS sequence could be obtained. Xiang et al. (2013) showed that using ITS sequences, ...

Multilocus sequence typing has proposed a Late Carboniferous/Early Permian origin around 270 mya. This species is found ...

... the strain was a new sequence type, ST-10217 determined by multilocus sequence typing. It was determined that a commensal ... These sequences are called DNA uptake sequences (DUSs). Specific recognition of these sequences is mediated by a type IV pilin ... meningitidis core genome Multilocus sequence typing (cgMLST). Available at: Neisseria typing Genetic transformation is the ... Of all ORFs in H44/76, 2,317 (93%) show more than 99% sequence identity. The complete genome sequence of strain NMA510612 ( ...

However, these species are readily differentiated from each other by Multi-Locus-Sequence-Typing, core genome phylogeny, or ... Genetic diversity for the different L. paracasei genomes was assessed using multilocus sequence typing (MLST) and amplified ... Maiden, Martin; Jane Bygraves; Edward Feil (January 6, 1998). "Multilocus sequence typing: A portable approach to the ... 16S RNA sequence homology has confirmed the relatedness between these species but core genome phylogeny confirmed that the ...

... but with the increased availability and reduced costs of sequencing, it is likely to be replaced by multilocus sequence typing ... The identification of S. dysgalactiae to the subspecies level is most reliably performed by multilocus sequence typing. MALDI ... Beall, B.; Facklam, R.; Thompson, T. (1996-04-01). "Sequencing emm-specific PCR products for routine and accurate typing of ... The most widely employed method is emm-typing. The emm-gene encodes the M-protein, a major virulence factor in both S. pyogenes ...

... multilocus enzyme electrophoresis, random amplified polymorphic DNA analysis, and multilocus sequence typing. Comparing the DNA ... Multilocus sequence typing has revealed that B. mallei most likely evolved from a B. pseudomallei clone reduction. About 1000 B ... It is closely related to B. pseudomallei, and by multilocus sequence typing it is a subspecies of B. pseudomallei. B. mallei ... Mallein test Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). "Multilocus sequence typing ...

"Phylogeny and Identification of Pantoea Species and Typing of Pantoea agglomerans Strains by Multilocus Gene Sequencing". ... "Bioactive Levan-Type Exopolysaccharide Produced by Pantoea agglomerans ZMR7: Characterization and Optimization for Enhanced ...

... using a new multilocus sequence typing scheme". Environmental Microbiology. 17 (4): 1414-1424. doi:10.1111/1462-2920.12625. ... sequences. Genotype ERIC I corresponds to the former species of Bacillus larvae, and genotypes ERIC II, III and IV correspond ...

Multi-Locus Sequence Typing is a technique that uses genomic information to establish evolutionary relationships between ... The phylogenetic trees based on Multi-Locus Sequence Typing (MLST) and Average Nucleotide Identity (ANI) indicated that strain ... BAC-end sequences were performed on each library for further analysis, and the sequences were scanned for vector contamination ... Once extracted and purified, the strategy for sequencing the genome was Whole Genome Sequencing by the method of a PacBio RS II ...

... and multilocus sequence typing of Verticillium nonalfalfae from the invasive Ailanthus altissima and other hosts". ... "Identification and Differentiation of Verticillium Species with PCR Markers and Sequencing of ITS Region." Plant and Animal ...

Godoy D; Randle G; Simpson AJ; Aanensen DM (May 2003). "Multilocus sequence typing and evolutionary relationships among the ... Based on the whole genome sequencing of the bacteria, the variety of the bacteria B. pseudomallei in Papua New Guinea is narrow ... B. pseudomallei has the ability to infect various types of cells and to evade human immune responses. Bacteria first enter at a ... This phenomenon may show that the risk of infection with B. pseudomallei is less than a typical biohazard type 3 agent. There ...

February 2006). "First insights into the evolution of Streptococcus uberis: a multilocus sequence typing scheme that enables ... Type strain of Streptococcus uberis at BacDive - the Bacterial Diversity Metadatabase v t e (Articles with short description, ...