A DNA amplification technique based upon the ligation of OLIGONUCLEOTIDE PROBES. The probes are designed to exactly match two adjacent sequences of a specific target DNA. The chain reaction is repeated in three steps in the presence of excess probe: (1) heat denaturation of double-stranded DNA, (2) annealing of probes to target DNA, and (3) joining of the probes by thermostable DNA ligase. After the reaction is repeated for 20-30 cycles the production of ligated probe is measured.
Infections with bacteria of the genus CHLAMYDIA.
Type species of CHLAMYDIA causing a variety of ocular and urogenital diseases.
Poly(deoxyribonucleotide):poly(deoxyribonucleotide)ligases. Enzymes that catalyze the joining of preformed deoxyribonucleotides in phosphodiester linkage during genetic processes during repair of a single-stranded break in duplex DNA. The class includes both EC 6.5.1.1 (ATP) and EC 6.5.1.2 (NAD).
Laboratory techniques that involve the in-vitro synthesis of many copies of DNA or RNA from one original template.
In vitro method for producing large amounts of specific DNA or RNA fragments of defined length and sequence from small amounts of short oligonucleotide flanking sequences (primers). The essential steps include thermal denaturation of the double-stranded target molecules, annealing of the primers to their complementary sequences, and extension of the annealed primers by enzymatic synthesis with DNA polymerase. The reaction is efficient, specific, and extremely sensitive. Uses for the reaction include disease diagnosis, detection of difficult-to-isolate pathogens, mutation analysis, genetic testing, DNA sequencing, and analyzing evolutionary relationships.
Acute infectious disease characterized by primary invasion of the urogenital tract. The etiologic agent, NEISSERIA GONORRHOEAE, was isolated by Neisser in 1879.
Analyses for a specific enzyme activity, or of the level of a specific enzyme that is used to assess health and disease risk, for early detection of disease or disease prediction, diagnosis, and change in disease status.
A potassium salt used to replenish ELECTROLYTES, for restoration of WATER-ELECTROLYTE BALANCE, as well as a urinary and systemic alkalizer, which can be administered orally or by intravenous infusion. Formerly, it was used in DIURETICS and EXPECTORANTS.
A class of enzymes that catalyze the formation of a bond between two substrate molecules, coupled with the hydrolysis of a pyrophosphate bond in ATP or a similar energy donor. (Dorland, 28th ed) EC 6.
Binary classification measures to assess test results. Sensitivity or recall rate is the proportion of true positives. Specificity is the probability of correctly determining the absence of a condition. (From Last, Dictionary of Epidemiology, 2d ed)
Commercially prepared reagent sets, with accessory devices, containing all of the major components and literature necessary to perform one or more designated diagnostic tests or procedures. They may be for laboratory or personal use.
Pathological processes involving the URETHRA.
The neck portion of the UTERUS between the lower isthmus and the VAGINA forming the cervical canal.
Pathological processes of the UTERINE CERVIX.
A species of gram-negative, aerobic bacteria primarily found in purulent venereal discharges. It is the causative agent of GONORRHEA.
A tube that transports URINE from the URINARY BLADDER to the outside of the body in both the sexes. It also has a reproductive function in the male by providing a passage for SPERM.
Liquid by-product of excretion produced in the kidneys, temporarily stored in the bladder until discharge through the URETHRA.
The presence of bacteria in the urine which is normally bacteria-free. These bacteria are from the URINARY TRACT and are not contaminants of the surrounding tissues. Bacteriuria can be symptomatic or asymptomatic. Significant bacteriuria is an indicator of urinary tract infection.
Deoxyribonucleic acid that makes up the genetic material of bacteria.
A selective increase in the number of copies of a gene coding for a specific protein without a proportional increase in other genes. It occurs naturally via the excision of a copy of the repeating sequence from the chromosome and its extrachromosomal replication in a plasmid, or via the production of an RNA transcript of the entire repeating sequence of ribosomal RNA followed by the reverse transcription of the molecule to produce an additional copy of the original DNA sequence. Laboratory techniques have been introduced for inducing disproportional replication by unequal crossing over, uptake of DNA from lysed cells, or generation of extrachromosomal sequences from rolling circle replication.
Procedures for collecting, preserving, and transporting of specimens sufficiently stable to provide accurate and precise results suitable for clinical interpretation.
Negative test results in subjects who possess the attribute for which the test is conducted. The labeling of diseased persons as healthy when screening in the detection of disease. (Last, A Dictionary of Epidemiology, 2d ed)
Techniques used in studying bacteria.
Studies determining the effectiveness or value of processes, personnel, and equipment, or the material on conducting such studies. For drugs and devices, CLINICAL TRIALS AS TOPIC; DRUG EVALUATION; and DRUG EVALUATION, PRECLINICAL are available.
An enzyme that catalyzes the conversion of linear RNA to a circular form by the transfer of the 5'-phosphate to the 3'-hydroxyl terminus. It also catalyzes the covalent joining of two polyribonucleotides in phosphodiester linkage. EC 6.5.1.3.
A species of gram-positive, aerobic bacteria that produces TUBERCULOSIS in humans, other primates, CATTLE; DOGS; and some other animals which have contact with humans. Growth tends to be in serpentine, cordlike masses in which the bacilli show a parallel orientation.
Collection of pooled secretions of the posterior vaginal fornix for cytologic examination.
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence.
A diverse class of enzymes that interact with UBIQUITIN-CONJUGATING ENZYMES and ubiquitination-specific protein substrates. Each member of this enzyme group has its own distinct specificity for a substrate and ubiquitin-conjugating enzyme. Ubiquitin-protein ligases exist as both monomeric proteins multiprotein complexes.
Organized periodic procedures performed on large groups of people for the purpose of detecting disease.
A variation of the PCR technique in which cDNA is made from RNA via reverse transcription. The resultant cDNA is then amplified using standard PCR protocols.
The total number of cases of a given disease in a specified population at a designated time. It is differentiated from INCIDENCE, which refers to the number of new cases in the population at a given time.

Comparison of a ligase chain reaction-based assay and cell culture for detection of pharyngeal carriage of Chlamydia trachomatis. (1/83)

In 264 genitourinary medicine clinic attenders reporting recent fellatio, the prevalence of pharyngeal Chlamydia trachomatis determined by an expanded standard including cell culture and two in-house PCR tests was 1.5% in 194 women and zero in 70 men. The ligase chain reaction (Abbott LCx) had a specificity of 99.2% and a positive predictive value of 60%.  (+info)

Efficient site-specific nonribozyme opening of hepatitis delta virus genomic RNA in infected livers. (2/83)

Examination of the 1,679-nucleotide (nt) unit-length hepatitis delta virus (HDV) RNAs in the livers of two HDV-infected woodchucks showed that 96% of the antigenomic RNA but only 50% of the genomic RNA was circular. We subsequently found that at least half of the linear unit-length genomic RNA was open at a unique location. Using a modified form of RNA ligation-mediated amplification of cDNA ends, we showed that the 5' end was located at nt 1212. Like the previously described ribozyme cleavage site at nt 686, the new site produced a 5'-OH. Nevertheless, we showed that this novel site was not produced by activity of the HDV genomic ribozyme. We speculate that the 5' end at nt 1212 reflects a preferred site of posttranscriptional endonucleolytic cleavage of genomic RNA.  (+info)

The ligase chain reaction as a primary screening tool for the detection of culture positive tuberculosis. (3/83)

BACKGROUND: The ligase chain reaction Mycobacterium tuberculosis assay uses ligase chain reaction technology to detect tuberculous DNA sequences in clinical specimens. A study was undertaken to determine its sensitivity and specificity as a primary screening tool for the detection of culture positive tuberculosis. METHODS: The study was conducted on 2420 clinical specimens (sputum, bronchoalveolar lavage fluid, pleural fluid, urine) submitted for primary screening for Mycobacterium tuberculosis to a regional medical microbiology laboratory. Specimens were tested in parallel with smear, ligase chain reaction, and culture. RESULTS: Thirty nine patients had specimens testing positive by the ligase chain reaction assay. Thirty two patients had newly diagnosed tuberculosis, one had a tuberculosis relapse, three had tuberculosis (on antituberculous therapy when tested), and three had healed tuberculosis. In the newly diagnosed group specimens were smear positive in 21 cases (66%), ligase chain reaction positive in 30 cases (94%), and culture positive in 32 cases (100%). Using a positive culture to diagnose active tuberculosis, the ligase chain reaction assay had a sensitivity of 93.9%, a specificity of 99.8%, a positive predictive value of 83.8%, and a negative predictive value of 99.9%. CONCLUSIONS: This study is the largest clinical trial to date to report the efficacy of the ligase chain reaction as a primary screening tool to detect Mycobacterium tuberculosis infection. The authors conclude that ligase chain reaction is a useful primary screening test for tuberculosis, offering speed and discrimination in the early stages of diagnosis and complementing traditional smear and culture techniques.  (+info)

Evaluation of nucleic acid amplification tests as reference tests for Chlamydia trachomatis infections in asymptomatic men. (4/83)

Urine ligase chain reaction (LCR) and PCR tests and urethral swab culture were compared for their abilities to detect Chlamydia trachomatis infection in 3,639 asymptomatic men by using one-, two-, and three-test reference standards. Frozen urine at four of five participating centers was also tested by a transcription-mediated amplification assay which was used as a reference test. LCR increased the yield of positive results by 27% and PCR increased the yield of positive results by 26% over the yield of positive results by culture (n = 295). LCR and PCR sensitivities were similar, ranging from 80.4 to 93.5%, depending on the reference standard. Culture sensitivity was substantially less. A multiple-test standard yielded LCR, PCR, and culture specificities of 99.6%, with or without discrepant analysis. Test performance varied among centers partly due to different interpretations of the testing protocols. The study confirms that urine LCR and PCR for the detection of C. trachomatis have substantially improved sensitivities over that of urethral swab culture for testing of asymptomatic men, enabling screening of this important target group. These tests, perhaps in combination, are also candidate reference tests for the conduct of test evaluation studies.  (+info)

Optimised sample DNA preparation for detection of Chlamydia trachomatis in synovial tissue by polymerase chain reaction and ligase chain reaction. (5/83)

OBJECTIVE: Molecular biology techniques such as polymerase chain reaction (PCR) and ligase chain reaction (LCR) are routinely used in research for detection of C trachomatis DNA in synovial samples, and these methods are now in use in some clinical laboratories. This study aimed at determining the method best suited to molecular diagnosis of C trachomatis by examining four standard DNA preparation methods using chlamydia spiked synovial tissue and chlamydia infected monocytes. METHODS: Synovial tissue from a chlamydia negative patient with rheumatoid arthritis was spiked with defined numbers of C trachomatis elementary bodies (EB). Purified human peripheral monocytes from normal donors were infected with the organism at a multiplicity of infection 1:1 in vitro and harvested after four days. DNA was prepared from all samples by four methods: (1) QIAmp tissue kit; (2) homogenisation in 65 degrees C phenol; (3) incubation at 97 degrees C; (4) proteinase K digestion at 97 degrees C. DNA from methods 1 and 2 was subjected to PCR using two different primer sets, each targeting the C trachomatis omp1 gene. LCR was done on DNA prepared by each method. RESULTS: In synovial tissue samples spiked with EB, and in monocytes persistently infected with the organism, preparation of template using the QIAmp tissue kit (method 1) and the hot phenol extraction technique (method 2) allowed sensitive detection of C trachomatis DNA. These methods also produced template from both sample types for LCR. DNA prepared by heat denaturation (method 3) allowed only low sensitivity chlamydia detection in LCR and did not work at all for PCR. Proteinase K digestion plus heat denaturation (method 4) gave template that did not allow amplification in either PCR or LCR assays. CONCLUSIONS: The sensitivity of detection for C trachomatis DNA in synovial tissue by PCR and LCR depends strongly on the method used for preparation of the amplification template. LCR targeting the multicopy chlamydial plasmid and two nested PCR assay systems targeting the single copy omp1 gene showed roughly equivalent sensitivity. Importantly, template preparation method and the specific PCR primer system used for screening must be optimised in relation to one another for highest sensitivity.  (+info)

Clinical aspects of diagnosis of gonorrhea and Chlamydia infection in an acute care setting. (6/83)

We found a 10.4% prevalence of unrecognized genital gonorrhea and Chlamydia infection among young adults of an urban emergency department. Intensified detection and treatment policies are needed to prevent continued transmission and complications of sexually transmitted infections.  (+info)

Emergency department screening for asymptomatic sexually transmitted infections. (7/83)

OBJECTIVES: This study assessed the prevalence and correlates of asymptomatic genital tract infection with Neisseria gonorrhoeae and Chlamydia trachomatis among emergency department patients. METHODS: Individuals seeking emergency department evaluation for nongenitourinary complaints provided urine samples for N gonorrhoeae and C trachomatis testing by ligase chain reaction and completed a sociodemographic and behavioral questionnaire. RESULTS: Asymptomatic N gonorrhoeae or C trachomatis was found in 9.7% of persons tested. Correlates of C trachomatis infection included younger age, residence in high-morbidity zip code areas, previous history of N gonorrhoeae or C trachomatis, and number of sex partners in the past year. CONCLUSIONS: Urine-based screening of asymptomatic emergency department patients detected significant numbers of N gonorrhoeae and C trachomatis infections. Targeted screening programs may contribute to community-level prevention and control of sexually transmitted infections.  (+info)

Is the detection of Mycobacterium tuberculosis DNA by ligase chain reaction worth the cost: experiences from an inner London teaching hospital. (8/83)

AIMS: To evaluate the clinical usefulness and the costs of using a rapid, commercial ligase chain reaction test (LCx) to detect Mycobacterium tuberculosis directly from clinical samples. METHODS: A prospective study of 2120 routine clinical specimens from 1161 patients over a 13 month period. Investigations for mycobacterial disease by microscopy, culture, and the Abbott LCx assay were performed. Sequential LCx assays were monitored in a cohort of patients undergoing treatment. The costs of the assay were calculated using the WELCAN system. Sensitivity, specificity, and positive and negative predictive values of the LCx assay were compared with conventional tests. The performance of the assay in patients undergoing treatment and cost in terms of WELCAN units converted to pounds/annum was studied. RESULTS: The assay was 85%/88% sensitive and 98%/100% specific in culture confirmed/clinically confirmed cases of tuberculosis, respectively. The assay was not useful for the measurement of treatment outcomes. The test cost approximately 42,500 Pounds/annum. CONCLUSIONS: The assay is a rapid, sensitive, and specific adjunct to clinical diagnosis, especially in differentiating non-tuberculous mycobacteria. However, it does not differentiate old and treated tuberculosis from reactivated disease, it is not useful to monitor adherence to treatment, and it is expensive.  (+info)

Ligase Chain Reaction (LCR) is a highly specific and sensitive method used in molecular biology for the detection of point mutations or small deletions or insertions in DNA. It is an enzymatic reaction-based technique that relies on the repeated ligation of adjacent oligonucleotide probes to form a continuous strand, followed by thermal denaturation and reannealing of the strands.

The LCR process involves the use of a thermostable ligase enzyme, which catalyzes the formation of a phosphodiester bond between two adjacent oligonucleotide probes that are hybridized to complementary sequences in the target DNA. The oligonucleotides are designed to have a gap at the site of the mutation or deletion/insertion, such that ligation can only occur if the probe sequences match perfectly with the target DNA.

After each round of ligation and denaturation, the reaction mixture is subjected to PCR amplification using primers flanking the region of interest. The amplified products are then analyzed for the presence or absence of ligated probes, indicating the presence or absence of the mutation or deletion/insertion in the target DNA.

LCR has been widely used in diagnostic and research applications, including the detection of genetic diseases, infectious agents, and cancer-associated mutations. However, it has largely been replaced by other more sensitive and high-throughput methods such as real-time PCR and next-generation sequencing.

Chlamydia infections are caused by the bacterium Chlamydia trachomatis and can affect multiple body sites, including the genitals, eyes, and respiratory system. The most common type of chlamydia infection is a sexually transmitted infection (STI) that affects the genitals.

In women, chlamydia infections can cause symptoms such as abnormal vaginal discharge, burning during urination, and pain in the lower abdomen. In men, symptoms may include discharge from the penis, painful urination, and testicular pain or swelling. However, many people with chlamydia infections do not experience any symptoms at all.

If left untreated, chlamydia infections can lead to serious complications, such as pelvic inflammatory disease (PID) in women, which can cause infertility and ectopic pregnancy. In men, chlamydia infections can cause epididymitis, an inflammation of the tube that carries sperm from the testicles, which can also lead to infertility.

Chlamydia infections are diagnosed through a variety of tests, including urine tests and swabs taken from the affected area. Once diagnosed, chlamydia infections can be treated with antibiotics such as azithromycin or doxycycline. It is important to note that treatment only clears the infection and does not repair any damage caused by the infection.

Prevention measures include practicing safe sex, getting regular STI screenings, and avoiding sharing towels or other personal items that may come into contact with infected bodily fluids.

'Chlamydia trachomatis' is a species of bacterium that is the causative agent of several infectious diseases in humans. It is an obligate intracellular pathogen, meaning it can only survive and reproduce inside host cells. The bacteria are transmitted through sexual contact, and can cause a range of genital tract infections, including urethritis, cervicitis, pelvic inflammatory disease, and epididymitis. In women, chlamydial infection can also lead to serious complications such as ectopic pregnancy and infertility.

In addition to genital infections, 'Chlamydia trachomatis' is also responsible for two other diseases: trachoma and lymphogranuloma venereum (LGV). Trachoma is a leading cause of preventable blindness worldwide, affecting mostly children in developing countries. It is spread through contact with contaminated hands, clothing, or eye secretions. LGV is a sexually transmitted infection that can cause inflammation of the lymph nodes, rectum, and genitals.

'Chlamydia trachomatis' infections are often asymptomatic, making them difficult to diagnose and treat. However, they can be detected through laboratory tests such as nucleic acid amplification tests (NAATs) or culture. Treatment typically involves antibiotics such as azithromycin or doxycycline. Prevention measures include safe sex practices, regular screening for STIs, and good hygiene.

DNA ligases are enzymes that catalyze the formation of a phosphodiester bond between two compatible ends of DNA molecules, effectively joining or "ligating" them together. There are several types of DNA ligases found in nature, each with specific functions and preferences for the type of DNA ends they can seal.

The most well-known DNA ligase is DNA ligase I, which plays a crucial role in replicating and repairing DNA in eukaryotic cells. It seals nicks or gaps in double-stranded DNA during replication and participates in the final step of DNA excision repair by rejoining the repaired strand to the original strand.

DNA ligase IV, another important enzyme, is primarily involved in the repair of double-strand breaks through a process called non-homologous end joining (NHEJ). This pathway is essential for maintaining genome stability and preventing chromosomal abnormalities.

Bacterial DNA ligases, such as T4 DNA ligase, are often used in molecular biology techniques due to their ability to join various types of DNA ends with high efficiency. These enzymes have been instrumental in the development of recombinant DNA technology and gene cloning methods.

Nucleic acid amplification techniques (NAATs) are medical laboratory methods used to increase the number of copies of a specific DNA or RNA sequence. These techniques are widely used in molecular biology and diagnostics, including the detection and diagnosis of infectious diseases, genetic disorders, and cancer.

The most commonly used NAAT is the polymerase chain reaction (PCR), which involves repeated cycles of heating and cooling to separate and replicate DNA strands. Other NAATs include loop-mediated isothermal amplification (LAMP), nucleic acid sequence-based amplification (NASBA), and transcription-mediated amplification (TMA).

NAATs offer several advantages over traditional culture methods for detecting pathogens, including faster turnaround times, increased sensitivity and specificity, and the ability to detect viable but non-culturable organisms. However, they also require specialized equipment and trained personnel, and there is a risk of contamination and false positive results if proper precautions are not taken.

Polymerase Chain Reaction (PCR) is a laboratory technique used to amplify specific regions of DNA. It enables the production of thousands to millions of copies of a particular DNA sequence in a rapid and efficient manner, making it an essential tool in various fields such as molecular biology, medical diagnostics, forensic science, and research.

The PCR process involves repeated cycles of heating and cooling to separate the DNA strands, allow primers (short sequences of single-stranded DNA) to attach to the target regions, and extend these primers using an enzyme called Taq polymerase, resulting in the exponential amplification of the desired DNA segment.

In a medical context, PCR is often used for detecting and quantifying specific pathogens (viruses, bacteria, fungi, or parasites) in clinical samples, identifying genetic mutations or polymorphisms associated with diseases, monitoring disease progression, and evaluating treatment effectiveness.

Gonorrhea is a sexually transmitted infection (STI) caused by the bacterium Neisseria gonorrhoeae, also known as "gono" bacteria. It can infect various parts of the body including the genitals, rectum, and throat. The bacteria are typically transmitted through sexual contact with an infected person.

Symptoms may vary but often include abnormal discharge from the genitals or rectum, painful or burning sensations during urination, and in women, vaginal bleeding between periods. However, many people with gonorrhea do not develop symptoms, making it essential to get tested regularly if you are sexually active with multiple partners or have unprotected sex.

If left untreated, gonorrhea can lead to severe complications such as pelvic inflammatory disease (PID) in women and epididymitis in men, which may result in infertility. In rare cases, it can spread to the bloodstream and cause life-threatening conditions like sepsis.

Gonorrhea is curable with appropriate antibiotic treatment; however, drug-resistant strains of the bacteria have emerged, making accurate diagnosis and effective treatment increasingly challenging. Prevention methods include using condoms during sexual activity and practicing safe sex habits.

Clinical enzyme tests are laboratory tests that measure the amount or activity of certain enzymes in biological samples, such as blood or bodily fluids. These tests are used to help diagnose and monitor various medical conditions, including organ damage, infection, inflammation, and genetic disorders.

Enzymes are proteins that catalyze chemical reactions in the body. Some enzymes are found primarily within specific organs or tissues, so elevated levels of these enzymes in the blood can indicate damage to those organs or tissues. For example, high levels of creatine kinase (CK) may suggest muscle damage, while increased levels of aspartate aminotransferase (AST) and alanine aminotransferase (ALT) can indicate liver damage.

There are several types of clinical enzyme tests, including:

1. Serum enzyme tests: These measure the level of enzymes in the blood serum, which is the liquid portion of the blood after clotting. Examples include CK, AST, ALT, alkaline phosphatase (ALP), and lactate dehydrogenase (LDH).
2. Urine enzyme tests: These measure the level of enzymes in the urine. An example is N-acetyl-β-D-glucosaminidase (NAG), which can indicate kidney damage.
3. Enzyme immunoassays (EIAs): These use antibodies to detect and quantify specific enzymes or proteins in a sample. They are often used for the diagnosis of infectious diseases, such as HIV or hepatitis.
4. Genetic enzyme tests: These can identify genetic mutations that cause deficiencies in specific enzymes, leading to inherited metabolic disorders like phenylketonuria (PKU) or Gaucher's disease.

It is important to note that the interpretation of clinical enzyme test results should be done by a healthcare professional, taking into account the patient's medical history, symptoms, and other diagnostic tests.

Potassium acetate is a medication and a type of salt known as a potassium salt. It is made up of potassium ions (K+) and acetate ions (C2H3O2-). In medical contexts, it is often used as an electrolyte replenisher in intravenous fluids to maintain proper potassium levels in the body. It may also be used to treat or prevent low potassium levels (hypokalemia) and metabolic acidosis, a condition characterized by excessive acidity in the blood.

Potassium is an essential mineral that plays crucial roles in various bodily functions, including heartbeat regulation, nerve transmission, and muscle contractions. Acetate is a substance that can be converted into bicarbonate in the body, which helps neutralize acid and maintain the proper pH balance.

As with any medication or treatment, potassium acetate should be used under the supervision of a healthcare professional to ensure safe and appropriate use.

Ligases are a group of enzymes that catalyze the formation of a covalent bond between two molecules, usually involving the joining of two nucleotides in a DNA or RNA strand. They play a crucial role in various biological processes such as DNA replication, repair, and recombination. In DNA ligases, the enzyme seals nicks or breaks in the phosphodiester backbone of the DNA molecule by catalyzing the formation of an ester bond between the 3'-hydroxyl group and the 5'-phosphate group of adjacent nucleotides. This process is essential for maintaining genomic integrity and stability.

Sensitivity and specificity are statistical measures used to describe the performance of a diagnostic test or screening tool in identifying true positive and true negative results.

* Sensitivity refers to the proportion of people who have a particular condition (true positives) who are correctly identified by the test. It is also known as the "true positive rate" or "recall." A highly sensitive test will identify most or all of the people with the condition, but may also produce more false positives.
* Specificity refers to the proportion of people who do not have a particular condition (true negatives) who are correctly identified by the test. It is also known as the "true negative rate." A highly specific test will identify most or all of the people without the condition, but may also produce more false negatives.

In medical testing, both sensitivity and specificity are important considerations when evaluating a diagnostic test. High sensitivity is desirable for screening tests that aim to identify as many cases of a condition as possible, while high specificity is desirable for confirmatory tests that aim to rule out the condition in people who do not have it.

It's worth noting that sensitivity and specificity are often influenced by factors such as the prevalence of the condition in the population being tested, the threshold used to define a positive result, and the reliability and validity of the test itself. Therefore, it's important to consider these factors when interpreting the results of a diagnostic test.

Reagent kits, diagnostic are prepackaged sets of chemical reagents and other components designed for performing specific diagnostic tests or assays. These kits are often used in clinical laboratories to detect and measure the presence or absence of various biomarkers, such as proteins, antibodies, antigens, nucleic acids, or small molecules, in biological samples like blood, urine, or tissues.

Diagnostic reagent kits typically contain detailed instructions for their use, along with the necessary reagents, controls, and sometimes specialized equipment or supplies. They are designed to simplify the testing process, reduce human error, and increase standardization, ensuring accurate and reliable results. Examples of diagnostic reagent kits include those used for pregnancy tests, infectious disease screening, drug testing, genetic testing, and cancer biomarker detection.

Urethral diseases refer to a range of conditions that affect the urethra, which is the tube that carries urine from the bladder out of the body. These diseases can cause various symptoms such as pain or discomfort during urination, difficulty in urinating, blood in urine, and abnormal discharge. Some common urethral diseases include urethritis (inflammation of the urethra), urethral stricture (narrowing of the urethra due to scar tissue or inflammation), and urethral cancer. The causes of urethral diseases can vary, including infections, injuries, congenital abnormalities, and certain medical conditions. Proper diagnosis and treatment are essential for managing urethral diseases and preventing complications.

The cervix uteri, often simply referred to as the cervix, is the lower part of the uterus (womb) that connects to the vagina. It has an opening called the external os through which menstrual blood exits the uterus and sperm enters during sexual intercourse. During childbirth, the cervix dilates or opens to allow for the passage of the baby through the birth canal.

Uterine cervical diseases refer to conditions that affect the cervix, which is the lower part of the uterus that opens into the vagina. These diseases can range from minor abnormalities to more serious conditions, such as:

1. Cervical dysplasia: This is a precancerous condition characterized by the presence of abnormal cells on the cervix. It is usually caused by the human papillomavirus (HPV) and can be detected through a Pap test.
2. Cervical cancer: This is a malignant tumor that develops in the cervical tissue. The most common type of cervical cancer is squamous cell carcinoma, which arises from the cells lining the surface of the cervix.
3. Cervicitis: This is an inflammation of the cervix, which can be caused by infections, irritants, or allergies. Symptoms may include vaginal discharge, pain, and bleeding.
4. Cervical polyps: These are benign growths that develop on the cervix. They are usually small and asymptomatic but can cause abnormal vaginal bleeding or discharge.
5. Cervical incompetence: This is a condition where the cervix begins to open prematurely during pregnancy, leading to a risk of miscarriage or preterm labor.

It's important to note that regular screening and early detection can help prevent or manage many cervical diseases, including cervical cancer.

Neisseria gonorrhoeae is a species of gram-negative, aerobic diplococcus that is the etiologic agent of gonorrhea, a sexually transmitted infection. It is commonly found in the mucous membranes of the reproductive tract, including the cervix, urethra, and rectum, as well as the throat and eyes. The bacterium can cause a range of symptoms, including discharge, burning during urination, and, in women, abnormal menstrual bleeding. If left untreated, it can lead to more serious complications, such as pelvic inflammatory disease and infertility. It is important to note that N. gonorrhoeae has developed resistance to many antibiotics over time, making treatment more challenging. A culture or nucleic acid amplification test (NAAT) is used for the diagnosis of this infection.

The urethra is the tube that carries urine from the bladder out of the body. In males, it also serves as the conduit for semen during ejaculation. The male urethra is longer than the female urethra and is divided into sections: the prostatic, membranous, and spongy (or penile) urethra. The female urethra extends from the bladder to the external urethral orifice, which is located just above the vaginal opening.

Urine is a physiological excretory product that is primarily composed of water, urea, and various ions (such as sodium, potassium, chloride, and others) that are the byproducts of protein metabolism. It also contains small amounts of other substances like uric acid, creatinine, ammonia, and various organic compounds. Urine is produced by the kidneys through a process called urination or micturition, where it is filtered from the blood and then stored in the bladder until it is excreted from the body through the urethra. The color, volume, and composition of urine can provide important diagnostic information about various medical conditions.

Bacteriuria is a medical term that refers to the presence of bacteria in the urine. The condition can be asymptomatic or symptomatic, and it can occur in various populations, including hospitalized patients, pregnant women, and individuals with underlying urologic abnormalities.

There are different types of bacteriuria, including:

1. Significant bacteriuria: This refers to the presence of a large number of bacteria in the urine (usually greater than 100,000 colony-forming units per milliliter or CFU/mL) and is often associated with urinary tract infection (UTI).
2. Contaminant bacteriuria: This occurs when bacteria from the skin or external environment enter the urine sample during collection, leading to a small number of bacteria present in the urine.
3. Asymptomatic bacteriuria: This refers to the presence of bacteria in the urine without any symptoms of UTI. It is more common in older adults, pregnant women, and individuals with diabetes or other underlying medical conditions.

The diagnosis of bacteriuria typically involves a urinalysis and urine culture to identify the type and quantity of bacteria present in the urine. Treatment depends on the type and severity of bacteriuria and may involve antibiotics to eliminate the infection. However, asymptomatic bacteriuria often does not require treatment unless it occurs in pregnant women or individuals undergoing urologic procedures.

Bacterial DNA refers to the genetic material found in bacteria. It is composed of a double-stranded helix containing four nucleotide bases - adenine (A), thymine (T), guanine (G), and cytosine (C) - that are linked together by phosphodiester bonds. The sequence of these bases in the DNA molecule carries the genetic information necessary for the growth, development, and reproduction of bacteria.

Bacterial DNA is circular in most bacterial species, although some have linear chromosomes. In addition to the main chromosome, many bacteria also contain small circular pieces of DNA called plasmids that can carry additional genes and provide resistance to antibiotics or other environmental stressors.

Unlike eukaryotic cells, which have their DNA enclosed within a nucleus, bacterial DNA is present in the cytoplasm of the cell, where it is in direct contact with the cell's metabolic machinery. This allows for rapid gene expression and regulation in response to changing environmental conditions.

Gene amplification is a process in molecular biology where a specific gene or set of genes are copied multiple times, leading to an increased number of copies of that gene within the genome. This can occur naturally in cells as a response to various stimuli, such as stress or exposure to certain chemicals, but it can also be induced artificially through laboratory techniques for research purposes.

In cancer biology, gene amplification is often associated with tumor development and progression, where the amplified genes can contribute to increased cell growth, survival, and drug resistance. For example, the overamplification of the HER2/neu gene in breast cancer has been linked to more aggressive tumors and poorer patient outcomes.

In diagnostic and research settings, gene amplification techniques like polymerase chain reaction (PCR) are commonly used to detect and analyze specific genes or genetic sequences of interest. These methods allow researchers to quickly and efficiently generate many copies of a particular DNA sequence, facilitating downstream analysis and detection of low-abundance targets.

Specimen handling is a set of procedures and practices followed in the collection, storage, transportation, and processing of medical samples or specimens (e.g., blood, tissue, urine, etc.) for laboratory analysis. Proper specimen handling ensures accurate test results, patient safety, and data integrity. It includes:

1. Correct labeling of the specimen container with required patient information.
2. Using appropriate containers and materials to collect, store, and transport the specimen.
3. Following proper collection techniques to avoid contamination or damage to the specimen.
4. Adhering to specific storage conditions (temperature, time, etc.) before testing.
5. Ensuring secure and timely transportation of the specimen to the laboratory.
6. Properly documenting all steps in the handling process for traceability and quality assurance.

A "false negative" reaction in medical testing refers to a situation where a diagnostic test incorrectly indicates the absence of a specific condition or disease, when in fact it is present. This can occur due to various reasons such as issues with the sensitivity of the test, improper sample collection, or specimen handling and storage.

False negative results can have serious consequences, as they may lead to delayed treatment, misdiagnosis, or a false sense of security for the patient. Therefore, it is essential to interpret medical test results in conjunction with other clinical findings, patient history, and physical examination. In some cases, repeating the test or using a different diagnostic method may be necessary to confirm the initial result.

Bacteriological techniques refer to the various methods and procedures used in the laboratory for the cultivation, identification, and study of bacteria. These techniques are essential in fields such as medicine, biotechnology, and research. Here are some common bacteriological techniques:

1. **Sterilization**: This is a process that eliminates or kills all forms of life, including bacteria, viruses, fungi, and spores. Common sterilization methods include autoclaving (using steam under pressure), dry heat (in an oven), chemical sterilants, and radiation.

2. **Aseptic Technique**: This refers to practices used to prevent contamination of sterile materials or environments with microorganisms. It includes the use of sterile equipment, gloves, and lab coats, as well as techniques such as flaming, alcohol swabbing, and using aseptic transfer devices.

3. **Media Preparation**: This involves the preparation of nutrient-rich substances that support bacterial growth. There are various types of media, including solid (agar), liquid (broth), and semi-solid (e.g., stab agar). The choice of medium depends on the type of bacteria being cultured and the purpose of the investigation.

4. **Inoculation**: This is the process of introducing a bacterial culture into a medium. It can be done using a loop, swab, or needle. The inoculum should be taken from a pure culture to avoid contamination.

5. **Incubation**: After inoculation, the bacteria are allowed to grow under controlled conditions of temperature, humidity, and atmospheric composition. This process is called incubation.

6. **Staining and Microscopy**: Bacteria are too small to be seen with the naked eye. Therefore, they need to be stained and observed under a microscope. Gram staining is a common method used to differentiate between two major groups of bacteria based on their cell wall composition.

7. **Biochemical Tests**: These are tests used to identify specific bacterial species based on their biochemical characteristics, such as their ability to ferment certain sugars, produce particular enzymes, or resist certain antibiotics.

8. **Molecular Techniques**: Advanced techniques like PCR and DNA sequencing can provide more precise identification of bacteria. They can also be used for genetic analysis and epidemiological studies.

Remember, handling microorganisms requires careful attention to biosafety procedures to prevent accidental infection or environmental contamination.

"Evaluation studies" is a broad term that refers to the systematic assessment or examination of a program, project, policy, intervention, or product. The goal of an evaluation study is to determine its merits, worth, and value by measuring its effects, efficiency, and impact. There are different types of evaluation studies, including formative evaluations (conducted during the development or implementation of a program to provide feedback for improvement), summative evaluations (conducted at the end of a program to determine its overall effectiveness), process evaluations (focusing on how a program is implemented and delivered), outcome evaluations (assessing the short-term and intermediate effects of a program), and impact evaluations (measuring the long-term and broad consequences of a program).

In medical contexts, evaluation studies are often used to assess the safety, efficacy, and cost-effectiveness of new treatments, interventions, or technologies. These studies can help healthcare providers make informed decisions about patient care, guide policymakers in developing evidence-based policies, and promote accountability and transparency in healthcare systems. Examples of evaluation studies in medicine include randomized controlled trials (RCTs) that compare the outcomes of a new treatment to those of a standard or placebo treatment, observational studies that examine the real-world effectiveness and safety of interventions, and economic evaluations that assess the costs and benefits of different healthcare options.

'Mycobacterium tuberculosis' is a species of slow-growing, aerobic, gram-positive bacteria that demonstrates acid-fastness. It is the primary causative agent of tuberculosis (TB) in humans. This bacterium has a complex cell wall rich in lipids, including mycolic acids, which provides a hydrophobic barrier and makes it resistant to many conventional antibiotics. The ability of M. tuberculosis to survive within host macrophages and resist the immune response contributes to its pathogenicity and the difficulty in treating TB infections.

M. tuberculosis is typically transmitted through inhalation of infectious droplets containing the bacteria, which primarily targets the lungs but can spread to other parts of the body (extrapulmonary TB). The infection may result in a spectrum of clinical manifestations, ranging from latent TB infection (LTBI) to active disease. LTBI represents a dormant state where individuals are infected with M. tuberculosis but do not show symptoms and cannot transmit the bacteria. However, they remain at risk of developing active TB throughout their lifetime, especially if their immune system becomes compromised.

Effective prevention and control strategies for TB rely on early detection, treatment, and public health interventions to limit transmission. The current first-line treatments for drug-susceptible TB include a combination of isoniazid, rifampin, ethambutol, and pyrazinamide for at least six months. Multidrug-resistant (MDR) and extensively drug-resistant (XDR) strains of M. tuberculosis present significant challenges in TB control and require more complex treatment regimens.

A vaginal smear, also known as a Pap test or Pap smear, is a medical procedure in which a sample of cells is collected from the cervix (the lower part of the uterus that opens into the vagina) and examined under a microscope. The purpose of this test is to detect abnormal cells, including precancerous changes, that may indicate the presence of cervical cancer or other conditions such as infections or inflammation.

During the procedure, a speculum is inserted into the vagina to allow the healthcare provider to visualize the cervix. A spatula or brush is then used to gently scrape cells from the surface of the cervix. The sample is spread onto a microscope slide and sent to a laboratory for analysis.

Regular Pap smears are recommended for women as part of their routine healthcare, as they can help detect abnormalities at an early stage when they are more easily treated. The frequency of Pap smears may vary depending on age, medical history, and other factors. It is important to follow the recommendations of a healthcare provider regarding the timing and frequency of Pap smears.

Molecular sequence data refers to the specific arrangement of molecules, most commonly nucleotides in DNA or RNA, or amino acids in proteins, that make up a biological macromolecule. This data is generated through laboratory techniques such as sequencing, and provides information about the exact order of the constituent molecules. This data is crucial in various fields of biology, including genetics, evolution, and molecular biology, allowing for comparisons between different organisms, identification of genetic variations, and studies of gene function and regulation.

A base sequence in the context of molecular biology refers to the specific order of nucleotides in a DNA or RNA molecule. In DNA, these nucleotides are adenine (A), guanine (G), cytosine (C), and thymine (T). In RNA, uracil (U) takes the place of thymine. The base sequence contains genetic information that is transcribed into RNA and ultimately translated into proteins. It is the exact order of these bases that determines the genetic code and thus the function of the DNA or RNA molecule.

Ubiquitin-protein ligases, also known as E3 ubiquitin ligases, are a group of enzymes that play a crucial role in the ubiquitination process. Ubiquitination is a post-translational modification where ubiquitin molecules are attached to specific target proteins, marking them for degradation by the proteasome or for other regulatory functions.

Ubiquitin-protein ligases catalyze the final step in this process by binding to both the ubiquitin protein and the target protein, facilitating the transfer of ubiquitin from an E2 ubiquitin-conjugating enzyme to the target protein. There are several different types of ubiquitin-protein ligases, each with their own specificity for particular target proteins and regulatory functions.

Ubiquitin-protein ligases have been implicated in various cellular processes such as protein degradation, DNA repair, signal transduction, and regulation of the cell cycle. Dysregulation of ubiquitination has been associated with several diseases, including cancer, neurodegenerative disorders, and inflammatory responses. Therefore, understanding the function and regulation of ubiquitin-protein ligases is an important area of research in biology and medicine.

Medical mass screening, also known as population screening, is a public health service that aims to identify and detect asymptomatic individuals in a given population who have or are at risk of a specific disease. The goal is to provide early treatment, reduce morbidity and mortality, and prevent the spread of diseases within the community.

A mass screening program typically involves offering a simple, quick, and non-invasive test to a large number of people in a defined population, regardless of their risk factors or symptoms. Those who test positive are then referred for further diagnostic tests and appropriate medical interventions. Examples of mass screening programs include mammography for breast cancer detection, PSA (prostate-specific antigen) testing for prostate cancer, and fecal occult blood testing for colorectal cancer.

It is important to note that mass screening programs should be evidence-based, cost-effective, and ethically sound, with clear benefits outweighing potential harms. They should also consider factors such as the prevalence of the disease in the population, the accuracy and reliability of the screening test, and the availability and effectiveness of treatment options.

Reverse Transcriptase Polymerase Chain Reaction (RT-PCR) is a laboratory technique used in molecular biology to amplify and detect specific DNA sequences. This technique is particularly useful for the detection and quantification of RNA viruses, as well as for the analysis of gene expression.

The process involves two main steps: reverse transcription and polymerase chain reaction (PCR). In the first step, reverse transcriptase enzyme is used to convert RNA into complementary DNA (cDNA) by reading the template provided by the RNA molecule. This cDNA then serves as a template for the PCR amplification step.

In the second step, the PCR reaction uses two primers that flank the target DNA sequence and a thermostable polymerase enzyme to repeatedly copy the targeted cDNA sequence. The reaction mixture is heated and cooled in cycles, allowing the primers to anneal to the template, and the polymerase to extend the new strand. This results in exponential amplification of the target DNA sequence, making it possible to detect even small amounts of RNA or cDNA.

RT-PCR is a sensitive and specific technique that has many applications in medical research and diagnostics, including the detection of viruses such as HIV, hepatitis C virus, and SARS-CoV-2 (the virus that causes COVID-19). It can also be used to study gene expression, identify genetic mutations, and diagnose genetic disorders.

Prevalence, in medical terms, refers to the total number of people in a given population who have a particular disease or condition at a specific point in time, or over a specified period. It is typically expressed as a percentage or a ratio of the number of cases to the size of the population. Prevalence differs from incidence, which measures the number of new cases that develop during a certain period.

  • The ligase chain reaction (LCR) is an amplification process that differs from PCR in that it involves a thermostable ligase to join two probes or other molecules together which can then be amplified by standard polymerase chain reaction (PCR) cycling (Barany, 1991). (wikipedia.org)
  • Thus, LCR requires two completely different enzymes to operate properly: ligase, to join probe molecules together, and a thermostable polymerase (e.g. (wikipedia.org)
  • Major NAT technologies include polymerase chain reaction (PCR) used for specificity, strand displacement amplification (SDA), ligase chain reaction (LCR), transcription-mediated amplification (TMA) nucleic acid sequence based amplification (NASBA) and whole genome sequencing. (prsync.com)
  • Additionally, the mRNA and protein expression of cyclin D1, cyclin-dependent kinase 4 (CDK4) and retinoblastoma protein (pRb), was further down-regulated under exposure to lovastatin in condition of BRCA1 overexpression, but the expression of p21WAF1/CIP1, a cyclin-dependent kinase inhibitor (CDKI), was further up-regulated, both in vitro and in vivo detected with quantitative real-time polymerase chain reaction (qRT-PCR) and Western blot analysis. (nih.gov)
  • A polymerase chain reaction/ligase detection reaction fluorescent microsphere assay to determine Plasmodium falciparum MSP-119 haplotypes. (umassmed.edu)
  • The process involves a polymerase chain reaction or ligase chain reaction with specific primers, nucleotide triphosphates, and taq polymerase leading to the production of detectable amounts of DNA or RNA. (medicaldevice-network.com)
  • Polymerase chain reaction (PCR), clustered regularly interspaced short palindromic repeats (CRISPR) and DNA gel electrophoresis are powerful molecular biology techniques. (goldbio.com)
  • In addition, we provide a wide range of products including reverse transcriptase (RT) and reverse transcription-polymerase chain reaction (RT-PCR) Kits that allow cDNA generation and detection of RNA. (goldbio.com)
  • Nine HPTs were genotyped in a collection of 90 geographically and temporally diverse B. pertussis strains using the polymerase chain reaction/ligase detection reaction (PCR/LDR) assay. (biomedcentral.com)
  • polymerase chain reaction-makes use of the noncoding sections of DNA. (tutorpro.us)
  • The genotypes of IL-10-592 A/C, -819 C/T and -1082 G/A sites were determined by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP), and polymerase chain reaction-ligase detection reaction (PCR-LDR) combined with the sequencing analysis in 226 cases of posthepatitis B cirrhosis. (jcimjournal.com)
  • Which of the following enzymes is key to the automation of PCR (polymerase chain reactions)? (easynotecards.com)
  • Steps and molecules involved in polymerase chain reaction are also described. (courses.com)
  • The ligase chain reaction (LCR) is a method of DNA amplification. (wikipedia.org)
  • The Chlamydia trachomatis assay uses LCR TM (ligase chain reaction) amplification technology in the LCx Probe System for the direct, qualitative detection of plasmid DNA of Chlamydia trachomatis. (cdc.gov)
  • The Neisseria gonorrhoeae assay uses LCR TM (ligase chain reaction) amplification technology in the LCx Probe System for the direct, qualitative detection of a specific target nucleic acid sequence in the Opa gene of Neisseria gonorrhoeae. (cdc.gov)
  • We also have interests in developing alternative DNA amplification methods - for example, the ligase chain reaction . (yourdictionary.com)
  • Multi-parameter Chlamydia trachomatis and Neisseria gonorrhea (CT/NG) Nucleic Acid Amplification combination test uses PCR or Ligase chain reaction methods to amplify nucleic acid sequences of C. trachomatis and N. gonorrhea, by targeting specific nucleic acid sequences. (medicaldevice-network.com)
  • DNA or RNA is used as a template for transcription and reverse transcription reactions in series also known as transcription mediated amplification or nucleic acid sequence-based amplification. (medicaldevice-network.com)
  • We offer high-quality PCR reagents for your DNA amplification reaction: dNTPs, PCR additives, and Taq, High Fidelity and Hot Start DNA Polymerases. (goldbio.com)
  • The software provides comprehensive tools for designing primers for most PCR and perspective applications, including standard, multiplex, long-distance, inverse, real-time with TaqMan probe, Xtreme Chain Reaction (XCR), group-specific, overlap-extension PCR for multi-fragment assembling cloning, and isothermal amplification. (edu.kz)
  • Molecular cloning techniques to mass-produce proteins using plasmid, restriction enzymes, ligase, and antibiotic selection in bacteria are discussed. (courses.com)
  • After completion of the cutting reaction, the remaining peptide fragments are analyzed by electrophoresis. (lookformedical.com)
  • Therefore, we have developed a collection of superior products including dNTPs, DNA polymerases, reverse transcriptases, ligases, master mixes, PCR and quantitative PCR kits, protocols and tools to help you achieve your research goals. (goldbio.com)
  • We also carry efficient ligases, T7 exonuclease and T7 endonuclease I that are ideal for nucleic acid manipulation. (goldbio.com)
  • The spread of heat through a substance is also a chain reaction, as fast-moving molecules in a hot part of the substance collide with neighboring molecules, passing on their kinetic energy to them, thereby making more of the substance warmer. (yourdictionary.com)
  • The probes involved in the ligation are designed such that the 5′ end of one probe is directly adjacent to the 3′ end of the other probe, thereby providing the requisite 3′-OH and 5′-PO4 group substrates for the ligase. (wikipedia.org)
  • DNA ligase-makes many copies of a segment of DNA. (tutorpro.us)
  • Ligases bonds the strand of DNA's together ( normally repairs DNA). (stackexchange.com)
  • A mismatch at the 3′ end of the discriminating primer prevents the DNA ligase from joining the two fragments together. (wikipedia.org)
  • A programme is available to design oligonucleotide sets for long sequence assembly by ligase chain reaction and to design multiplexed of overlapping and non-overlapping DNA amplicons that tile across a region(s) of interest for targeted next-generation sequencing (molecular tagging), among other features. (edu.kz)
  • RNF213/ALO17/mysterin (Ring Finger Protein 213) is the largest known human single-chain E3 ubiquitin ligase, first described as the major susceptibility factor for Moyamoya disease (MMD) ( 1 ), a disorder which causes aberrant vasculature development commonly leading to stroke and other complications ( 2 ). (biorxiv.org)
  • We recently described the structure of M. musculus RNF213 (PDB: 6TAX) and characterized its enzymatic activity, revealing it as a large monomeric protein with a functional dynein-like AAA (ATPases Associated with diverse cellular Activities) core that exists alongside a novel E3 ligase module ( 16 ). (biorxiv.org)
  • The ligase chain reaction (LCR) test is one of the tests. (medlineplus.gov)
  • A process in which the result of one event triggers another event, usually of the same kind, which in turn triggers yet another event, so that the overall reaction tends to be self-sustaining. (yourdictionary.com)
  • RNF213 is a giant E3 ubiquitin ligase and a major susceptibility factor of Moyamoya disease, a cerebrovascular disorder that can result in stroke or death. (biorxiv.org)
  • This triggers a chain reaction in the cancer cells, which can result in them commiting suicide. (yourdictionary.com)
  • Our EvaGreen® dye, a great alternative to SYBR® Green I , Goof-Proof™ qPCR Master Mix, and RT-qPCR Kit are optimal for use in your DNA melt curve analysis and real time-PCR (RT-PCR) reactions. (goldbio.com)
  • Subsequent differentiation allows for rear- analysis of a set of mouse B lineage cell lines rep- rangements of the Ig light-chain (IgL) genes that replace the resenting defined stages of B cell development us- surrogate light-chain genes on the surface of the B cell [8]. (lu.se)
  • The ligase chain reaction (LCR) is an amplification process that differs from PCR in that it involves a thermostable ligase to join two probes or other molecules together which can then be amplified by standard polymerase chain reaction (PCR) cycling (Barany, 1991). (wikipedia.org)
  • We performed PMS2 mutation analysis using long-range polymerase chain reaction and multiplex ligation-dependent probe amplification for 99 probands diagnosed with Lynch syndrome-associated tumors showing isolated loss of PMS2 by immunohistochemistry. (nih.gov)
  • Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. (loinc.org)
  • Respondents were invited to provide a first void urine (FVU) specimen for polymerase chain reaction testing for C trachomatis infection. (bmj.com)
  • The polymerase chain reaction (PCR) is a technique that allows amplification of nucleic acids in-vitro. (biosyn.com)
  • Whereas van B gene primers highlighted the polymerase chain reaction (PCR) product of 1248 bp, which has shown a relation with ABC transport proteins of Enterococcus faecalis V583 instead of the ligase meant for the van B resistance trait. (academicjournals.org)
  • PCR is known as the polymerase chain reaction. (tutorialspoint.com)
  • The differential gene expression profile was confirmed with reverse transcription-polymerase chain reaction using primers specific for the differentially expressed genes. (cdc.gov)
  • Reverse transcriptases (RTs) use an RNA template and a primer complementary to the 3′ end of the RNA to direct the synthesis of the first strand cDNA, which can be used directly as a template for the Polymerase Chain Reaction (PCR). (neb.com)
  • The process involves a polymerase chain reaction or ligase chain reaction with specific primers, nucleotide triphosphates, and taq polymerase leading to the production of detectable amounts of DNA or RNA. (medicaldevice-network.com)
  • Assembly and cloning of coding sequences for neurotrophic factors directly from genomic DNA using polymerase chain reaction and uracil DNA glycosylase. (gen9bio.com)
  • The global polymerase chain reaction (PCR) market size was USD 8.50 Billion in 2022 and is expected to register a revenue CAGR of 8.5% during the forecast period. (emergenresearch.com)
  • Polymerase Chain Reaction (PCR) system is a tool used for amplification of small segments of genome to produce millions of copies of nucleic acid with the help of primers. (emergenresearch.com)
  • Besides COVID-19 detection, a polymerase chain reaction system is used for detection of various chronic diseases such as cancer and others. (emergenresearch.com)
  • The other major factor driving revenue growth of the polymerase chain reaction market is rising demand for personalized and precision medicines. (emergenresearch.com)
  • In addition, increasing government funding in research and development of genomic study thus creating a high demand for polymerase chain reaction and supporting market revenue growth. (emergenresearch.com)
  • Genotyping was performed using the polymerase chain reaction-ligase detection reaction method. (geneticsmr.com)
  • Batt, C. A. title: Applications of DNA amplification techniques in veterinary diagnostics date: 1995 journal: Vet Res Commun DOI: 10.1007/bf01839319 sha: 9282b6f2a3a4c79ab56505e5c040a8b94b0750de doc_id: 5364 cord_uid: gwkr4r1k An overview of the principles of the polymerase chain reaction, ligase chain reaction, self-sustained sequence replication and Qβ replicase is given. (distantreader.org)
  • The polymerase chain reaction (PCR) is an in vitro enzymatic method which allows several million-fold amplification of a specific DNA sequence. (distantreader.org)
  • Droplet digital polymerase chain reaction (ddPCR), which has been shown to have higher sensitivity at diagnosing malaria, allows direct quantification without the need for a standard curve. (biomedcentral.com)
  • Michael W. Pfaffl mostly deals with Molecular biology, Real-time polymerase chain reaction, Gene expression, Computational biology and RNA. (research.com)
  • His Molecular biology study combines topics in areas such as Reverse transcriptase, Polymerase chain reaction, Ligase chain reaction, Biological system and Reproducibility. (research.com)
  • His Real-time polymerase chain reaction study integrates concerns from other disciplines, such as Reverse transcription polymerase chain reaction, Multiple displacement amplification, Amplicon and Applications of PCR. (research.com)
  • His Molecular biology research is multidisciplinary, relying on both Cell culture, RNA, Reverse transcriptase, Polymerase chain reaction and Real-time polymerase chain reaction. (research.com)
  • AIMS: To evaluate the sensitivity of the Roche Cobas, Roche Amplicor plate kit, ligase chain reaction (LCR), and an in house polymerase chain reaction (PCR) by titration of purified elementary bodies (EB) and also to test 245 urethral and endocervical specimens for Chlamydia trachomatis by the four assays as well as conventional culture. (ox.ac.uk)
  • Epidemiology and natural history of ligases chain reaction detected chlamydia and gonococcal infections. (academicjournals.org)
  • 5. Low correlation of serology with detection of Chlamydia trachomatis by ligase chain reaction and antigen EIA. (nih.gov)
  • The Chlamydia trachomatis assay uses LCR TM (ligase chain reaction) amplification technology in the LCx Probe System for the direct, qualitative detection of plasmid DNA of Chlamydia trachomatis. (cdc.gov)
  • Sensitive urine tests for gonorrhea and chlamydia are now available (ligase chain reaction) and, coupled with a vaginal vault swab, can produce accurate diagnosis. (familydoctor.co.nz)
  • Multi-parameter Chlamydia trachomatis and Neisseria gonorrhea (CT/NG) Nucleic Acid Amplification combination test uses PCR or Ligase chain reaction methods to amplify nucleic acid sequences of C. trachomatis and N. gonorrhea, by targeting specific nucleic acid sequences. (medicaldevice-network.com)
  • LCR was first developed by Barany, who used thermostable DNA ligase to discriminate between normal and mutant DNA and to amplify the allele-specific product. (wikipedia.org)
  • LDA uses a thermostable DNA ligase during the PCR reaction in which a circular DNA serves as the template. (biosyn.com)
  • The chain reaction is repeated in three steps in the presence of excess probe: (1) heat denaturation of double-stranded DNA , (2) annealing of probes to target DNA , and (3) joining of the probes by thermostable DNA ligase. (nih.gov)
  • Thus, LCR requires two completely different enzymes to operate properly: ligase, to join probe molecules together, and a thermostable polymerase (e.g. (wikipedia.org)
  • Several new major enzyme categories include: DNA Repair Enzymes, Metalloexopeptidases, Oxidoreductases Acting on CH-CH Group Donors, Proprotein Convertases, and Ubiquitin-Protein Ligase Complexes. (nih.gov)
  • The most important enzymes required for genetic engineering are the restriction enzymes, DNA ligase and alkaline phosphatase etc. (tutorialspoint.com)
  • Enzymes called DNA ligases can create covalent bonds between nucleotide chains. (tutorialspoint.com)
  • The activation of Nrf2 by apo-10'-lycopenoic acid is associated with the induction of phase II detoxifying/antioxidant enzymes including heme oxygenase-1, NAD(P)H:quinone oxidoreductase 1, glutathione S-transferases, and glutamate-cysteine ligases in BEAS-2B cells. (nih.gov)
  • Electron Transport Chain Complex Proteins and Photosynthetic Reaction Center Complex Proteins were added as new descriptors. (nih.gov)
  • If a patient is low risk, presenting dysuria with or without discharge, has no abdominal pain and external exam and vaginal swabs are normal, she may be treated for cystitis while awaiting ligase chain reaction results. (familydoctor.co.nz)
  • Study Design Study participants at each initial session were asked to provide self-obtained vaginal swabs for ligase chain reaction testing to detect N gonorrhoeae and C trachomatis , and for culture of T vaginalis . (jamanetwork.com)
  • Cherepanov A" Binding of Short Base Pair DNA Oligonucleotides mismatches by T4 DNA ligase "J. Biochem. (gen9bio.com)
  • The probes involved in the ligation are designed such that the 5′ end of one probe is directly adjacent to the 3′ end of the other probe, thereby providing the requisite 3′-OH and 5′-PO4 group substrates for the ligase. (wikipedia.org)
  • Tth DNA Ligase is stable and active in optimum ligation temperature range of 45 - 65°C, which is 7 - 10°C higher than that of T4 DNA ligase . (blirt.eu)
  • The final reaction ligation temperature is determined by the Tm of the substrates. (blirt.eu)
  • One unit of Tth DNA Ligase catalyzes the ligation of 50% of the cos sites present in 1 μg of bacteriophage lambda DNA in 1 minute at 45°C. (blirt.eu)
  • Enzyme is isolated from Escherichia coli strain containing plasmid carrying the Thermus thermophilus DNA ligase gene. (blirt.eu)
  • Tth DNA Ligase catalyzes the NAD-dependent formation of phosphodiester bonds between adjacent 3'-hydroxyl and 5'-phosphate termini in double stranded DNA. (blirt.eu)
  • Alternatively, the first-strand cDNA can be made double-stranded using DNA Polymerase I and DNA Ligase. (neb.com)
  • As part of this process, (10Z)-pentadec-10-enoic acid is first transported into the cell via the long-chain fatty acid transport protein 1 (FATP1). (smpdb.ca)
  • This reaction is facilitated by the long-chain fatty-acid CoA ligase 1 protein, which adds a CoA moiety to appropriate acyl groups. (smpdb.ca)
  • Polymorphism of DNA ligase I and risk of lung cancer--a case-control analysis. (nih.gov)
  • As urine ligase chain reaction lab tests become more readily available it will be reasonable to limit full pelvic examinations. (familydoctor.co.nz)
  • We also offer solutions for automation, site-directed mutagenesis, as well as your favorite restriction enzyme, ligase or competent cell products. (neb.com)
  • An increasing number of genetic diseases are linked to deregulation of E3 ubiquitin ligases. (nih.gov)
  • Ghosh B, Barbosa E, Singh I: Molecular cloning and sequencing of human palmitoyl-CoA ligase and its tissue specific expression. (smpdb.ca)
  • A mismatch at the 3′ end of the discriminating primer prevents the DNA ligase from joining the two fragments together. (wikipedia.org)
  • After a primer is fully extended along the circular template, the ligase closes the gap. (biosyn.com)
  • Functional screening and in vitro analysis reveal thioesterases with enhanced substrate specificity profiles that improve short-chain fatty acid production in Escherichia coli. (rhea-db.org)
  • The use of the more thermostable RTs, where reactions are performed at higher temperatures, may be helpful for reverse transcription of RNA that containing secondary structure. (neb.com)
  • Functionally, RNF216 assembles K63-linked ubiquitin chains and has been implicated in regulation of innate immunity signaling pathways and synaptic plasticity. (nih.gov)
  • C) in exon 6 of DNA ligase I (LIG1) was identified, but its functional relevance remains to be determined. (nih.gov)
  • The product of the LCR reaction is detected on the Abbott LCx analyzer. (cdc.gov)
  • The ligase chain reaction (LCR) test is one of the tests. (medlineplus.gov)
  • After the reaction is repeated for 20-30 cycles the production of ligated probe is measured. (nih.gov)
  • Search chemical reactions in Rhea for this molecule. (rhea-db.org)
  • However, the reaction produces linear products. (biosyn.com)
  • The reaction products were analyzed using agarose electrophoresis and tested for their function by their ability to transform bacterial cells. (biosyn.com)
  • To expand on Escherichia coli SCFA products, we previously implemented a coenzyme A (CoA)-dependent pathway that condenses acetyl-CoA to a diverse group of short-chain fatty acyl-CoAs. (rhea-db.org)
  • The B-chain in human insulin had a threonine amino acid at the C-terminal, while in pig insulin there was an alanine amino acid. (ukessays.com)
  • On the A-chain a valine amino acid is at the A10 position and alanine on the A8 position, unlike human insulin which has isoleucine on the A10 position and threonine on the A8 position [4]. (ukessays.com)
  • Such clonally amplified DNAs can serve as a template for next generation sequencing biochemical reactions. (justia.com)
  • DNA ligases catalyze the joining of single and double-strand DNA breaks, which is an essential step in DNA replication, recombination and repair. (nih.gov)
  • It is a four-color fluorescence-based kit, which helps to differentiate between Smallpox and Monkeypox in a one-tube single reaction format, with a total turnaround time of 1 hour. (emergenresearch.com)
  • Can Tth DNA ligase be heat inactivated? (blirt.eu)
  • Tth DNA Ligase activity is tested in reaction with bacteriophage lambda DNA digested with SalI and SmaI, with a dilution series of ligase. (blirt.eu)
  • Short-chain fatty acid (SCFA) biosynthesis is pertinent to production of biofuels, industrial compounds, and pharmaceuticals from renewable resources. (rhea-db.org)
  • Once inside the cell it undergoes a reaction to form an acyl-CoA derivative called (10Z)-pentadec-10-enoyl-CoA. (smpdb.ca)
  • Acetyl-CoA can go on to enter the TCA cycle, or it can react with L-carnitine to form L-acetylcarnitine in a reaction catalyzed by Carnitine O-acetyltransferase. (smpdb.ca)
  • This reaction can occur in both directions, and L-acetylcarnitine and CoA can react to form acetyl-CoA and L-carnitine in certain circumstances. (smpdb.ca)
  • Reaction with equal flow from both directions. (rhea-db.org)

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