Receptors, Estradiol
Deoxyribonucleases, Type III Site-Specific
Deoxyribonucleases, Type I Site-Specific
Receptors, Estrogen
Estradiol
Deoxyribonuclease HpaII
Deoxyribonucleases, Type II Site-Specific
Teniposide
Casein Kinase II
Methylation
Collagen Type II
Molecular Sequence Data
Telomeric repeats on small polydisperse circular DNA (spcDNA) and genomic instability. (1/2461)
Small polydisperse circular DNA (spcDNA) is a heterogeneous population of extrachromosomal circular molecules present in a large variety of eukaryotic cells. Elevated amounts of total spcDNA are related to endogenous and induced genomic instability in rodent and human cells. We suggested spcDNA as a novel marker for genomic instability, and speculated that spcDNA might serve as a mutator. In this study, we examine the presence of telomeric sequences on spcDNA. We report for the first time the appearance of telomeric repeats in spcDNA molecules (tel-spcDNA) in rodent and human cells. Restriction enzyme analysis indicates that tel-spcDNA molecules harbor mostly, if not exclusively, telomeric repeats. In rodent cells, tel-spcDNA levels are higher in transformed than in normal cells and are enhanced by treatment with carcinogen. Tel-spcDNA is also detected in some human tumors and cell lines, but not in others. We suggest, that its levels in human cells may be primarily related to the amount of the chromosomal telomeric sequences. Tel-spcDNA may serve as a unique mutator, through specific mechanisms related to the telomeric repeats, which distinguish it from the total heterogeneous spcDNA population. It may affect telomere dynamics and genomic instability by clastogenic events, alterations of telomere size and sequestration of telomeric proteins. (+info)A 43-nucleotide RNA cis-acting element governs the site-specific formation of the 3' end of a poxvirus late mRNA. (2/2461)
The 3' ends of late mRNAs of the ati gene, encoding the major component of the A-type inclusions, are generated by endoribonucleolytic cleavage at a specific site in the primary transcript [Antczak et al., (1992), Proc. Natl. Acad. Sci. USA 89, 12033-12037]. In this study, sequence analysis of cDNAs of the 3' ends of ati mRNAs showed these mRNAs are 3' polyadenylated at the RNA cleavage site. This suggests that ati mRNA 3' end formation involves cleavage of a late transcript, with subsequent 3' polyadenylation of the 5' cleavage product. The RNA cis-acting element, the AX element, directing orientation-dependent formation of these mRNA 3' ends, was mapped to a 345-bp AluI-XbaI fragment. Deletion analyses of this fragment showed that the boundaries of the AX element are within -5 and +38 of the RNA cleavage site. Scanning mutagenesis showed that the AX element contains at least two subelements: subelement I, 5'-UUUAU downward arrowCCGAUAAUUC-3', containing the cleavage site ( downward arrow), separated from the downstream subelement II, 5'-AAUUUCGGAUUUGAAUGC-3', by a 10-nucleotide region, whose composition may be altered without effect on RNA 3' end formation. These features, which differ from those of other elements controlling RNA processing, suggest that the AX element is a component of a novel mechanism of RNA 3' end formation. (+info)A randomly amplified polymorphic DNA marker specific for the Bacillus cereus group is diagnostic for Bacillus anthracis. (3/2461)
Aiming to develop a DNA marker specific for Bacillus anthracis and able to discriminate this species from Bacillus cereus, Bacillus thuringiensis, and Bacillus mycoides, we applied the randomly amplified polymorphic DNA (RAPD) fingerprinting technique to a collection of 101 strains of the genus Bacillus, including 61 strains of the B. cereus group. An 838-bp RAPD marker (SG-850) specific for B. cereus, B. thuringiensis, B. anthracis, and B. mycoides was identified. This fragment included a putative (366-nucleotide) open reading frame highly homologous to the ypuA gene of Bacillus subtilis. The restriction analysis of the SG-850 fragment with AluI distinguished B. anthracis from the other species of the B. cereus group. (+info)X-chromosome inactivation patterns do not implicate asymmetric splitting of the inner cell mass in the aetiology of twin-twin transfusion syndrome. (4/2461)
The aetiology of twin-twin transfusion syndrome (TTTS) is unclear. We investigated the hypothesis that monochorionic (MC) pregnancies with TTTS are associated with differences in the timing and symmetry of twinning compared to MC twin pregnancies without TTTS. DNA was extracted from the umbilical cord vessels of 26 female MC twins, 14 with and 12 without TTTS on serial antenatal ultrasound. X-inactivation patterns were determined by DNA digestion with Hhal and Hpall followed by polymerase chain reaction for a polymorphic trinucleotide repeat in the androgen receptor gene. Products were quantified by densitometry and results compared to those in peripheral blood samples of adult female controls. The median degree of non-random inactivation was similar in MC twins with TTTS, in MC twins without TTTS, and in adult controls. The percentage of individuals with skewed (> or =30/70%) inactivation patterns was no different in MC twins with TTTS compared to those without TTTS, and was similar to adult controls using either enzyme technique. In conclusion we found no difference in the degree or frequency of non-random X-inactivation patterns in TTTS. X-inactivation patterns do not appear to be a useful tool for studying the symmetry of inner cell mass splitting in monochorionic twins. (+info)Comparison of large restriction fragments of Mycobacterium avium isolates recovered from AIDS and non-AIDS patients with those of isolates from potable water. (5/2461)
We examined potable water in Los Angeles, California, as a possible source of infection in AIDS and non-AIDS patients. Nontuberculous mycobacteria were recovered from 12 (92%) of 13 reservoirs, 45 (82%) of 55 homes, 31 (100%) of 31 commercial buildings, and 15 (100%) of 15 hospitals. Large-restriction-fragment (LRF) pattern analyses were done with AseI. The LRF patterns of Mycobacterium avium isolates recovered from potable water in three homes, two commercial buildings, one reservoir, and eight hospitals had varying degrees of relatedness to 19 clinical isolates recovered from 17 patients. The high number of M. avium isolates recovered from hospital water and their close relationship with clinical isolates suggests the potential threat of nosocomial spread. This study supports the possibility that potable water is a source for the acquisition of M. avium infections. (+info)Requirement of ATM in phosphorylation of the human p53 protein at serine 15 following DNA double-strand breaks. (6/2461)
Microinjection of the restriction endonuclease HaeIII, which causes DNA double-strand breaks with blunt ends, induces nuclear accumulation of p53 protein in normal and xeroderma pigmentosum (XP) primary fibroblasts. In contrast, this induction of p53 accumulation is not observed in ataxia telangiectasia (AT) fibroblasts. HaeIII-induced p53 protein in normal fibroblasts is phosphorylated at serine 15, as determined by immunostaining with an antibody specific for phosphorylated serine 15 of p53. This phosphorylation correlates well with p53 accumulation. Treatment with lactacystin (an inhibitor of the proteasome) or heat shock leads to similar levels of p53 accumulation in normal and AT fibroblasts, but the p53 protein lacks a phosphorylated serine 15. Following microinjection of HaeIII into lactacystin-treated normal fibroblasts, lactacystin-induced p53 protein is phosphorylated at serine 15 and stabilized even in the presence of cycloheximide. However, neither stabilization nor phosphorylation at serine 15 is observed in AT fibroblasts under the same conditions. These results indicate the significance of serine 15 phosphorylation for p53 stabilization after DNA double-strand breaks and an absolute requirement for ATM in this phosphorylation process. (+info)Isolation of Enterococcus faecalis clinical isolates that efficiently adhere to human bladder carcinoma T24 cells and inhibition of adhesion by fibronectin and trypsin treatment. (7/2461)
The adherence of Enterococcus faecalis strains to human T24 cells was examined by scanning electron microscopy. Five highly adhesive strains were identified from 30 strains isolated from the urine of patients with urinary tract infections. No efficiently adhesive strains were found among the 30 strains isolated from the feces of healthy students. The five isolated strains also adhered efficiently to human bladder epithelial cells. Analysis of restriction endonuclease-digested plasmid DNAs and chromosome DNAs showed that the five strains were different strains isolated from different patients. The adhesiveness of these strains was inhibited by treatment with fibronectin or trypsin, implying that a specific protein (adhesin) on the bacterial cell surface mediates adherence to fibronectin on the host cell surfaces, and the adhesin differs from the reported adhesins. (+info)A new CYP2A6 gene deletion responsible for the in vivo polymorphic metabolism of (+)-cis-3,5-dimethyl-2-(3-pyridyl)thiazolidin-4-one hydrochloride in humans. (8/2461)
(+)-Cis-3,5-dimethyl-2-(3-pyridyl)thiazolidin-4-one hydrochloride (SM-12502) is a newly developed drug as a platelet-activating factor receptor antagonist. The disposition of SM-12502 was investigated in plasma from 28 healthy Japanese volunteers after a single i.v. administration of SM-12502. Three of 28 subjects were phenotyped as poor metabolizers (PMs). Genomic DNAs from three extensive metabolizers or three PMs of SM-12502 were analyzed by Southern blot analysis with CYP2A6 cDNA as a probe. DNAs from three PMs digested with SacI and SphI showed novel restriction fragment length polymorphisms (RFLPs); one type without 4.5- and 2.6-kb fragments and a weak density of a 6.4-kb fragment (E-type), and the other type without 7.1- and 5.5-kb restriction fragments (C'-type) as compared with three extensive metabolizers, respectively. The deletional restriction fragments specific to three PMs in SacI- and SphI-RFLPs were identified as CYP2A6. Using polymerase chain reaction-RFLP analyses of the gene from the three PMs, we found that the exon 1, exon 8, and exon 9 in CYP2A6 were absent. A new RFLP characterized by SacI and SphI was found to be due to the entire gene deletion of the three exons and was associated with the decreased metabolism of SM-12502. This study demonstrates a new deletional allele in the human CYP2A6 gene responsible for the poor metabolic phenotype of SM-12502. (+info)Deoxyribonucleases (DNases) are a group of enzymes that cleave, or cut, the phosphodiester bonds in the backbone of deoxyribonucleic acid (DNA) molecules. DNases are classified based on their mechanism of action into two main categories: double-stranded DNases and single-stranded DNases.
Double-stranded DNases cleave both strands of the DNA duplex, while single-stranded DNases cleave only one strand. These enzymes play important roles in various biological processes, such as DNA replication, repair, recombination, and degradation. They are also used in research and clinical settings for applications such as DNA fragmentation analysis, DNA sequencing, and treatment of cystic fibrosis.
It's worth noting that there are many different types of DNases with varying specificities and activities, and the medical definition may vary depending on the context.
Estradiol receptors are a type of nuclear receptor protein that are activated by the hormone 17-β estradiol, which is a form of estrogen. These receptors are found in various tissues throughout the body, including the breasts, uterus, ovaries, prostate, and brain.
There are two main types of estradiol receptors, known as ERα and ERβ. Once activated by estradiol, these receptors function as transcription factors, binding to specific DNA sequences in the nucleus of cells and regulating the expression of target genes. This process plays a critical role in the development and maintenance of female sex characteristics, as well as in various physiological processes such as bone metabolism, cognitive function, and cardiovascular health.
Abnormalities in estradiol receptor signaling have been implicated in several diseases, including breast and endometrial cancers, osteoporosis, and neurological disorders. As a result, estradiol receptors are an important target for the development of therapies aimed at treating these conditions.
Cyclohexanones are organic compounds that consist of a cyclohexane ring (a six-carbon saturated ring) with a ketone functional group (-CO-) attached to it. The general structure is C6H11CO. They can be found in various natural sources, including essential oils and certain plants, but many cyclohexanones are also synthesized for use in the chemical industry.
Cyclohexanones are important intermediates in the production of various chemicals, such as nylon and other synthetic fibers, resins, and perfumes. One of the most common cyclohexanones is cyclohexanone itself, which is a colorless liquid with an odor reminiscent of peppermint or acetone. It is used in the production of adipic acid, a precursor to nylon.
Like other ketones, cyclohexanones can undergo various chemical reactions, such as reduction, oxidation, and condensation. However, due to the cyclic structure of cyclohexanones, they also exhibit unique reactivity patterns that are exploited in organic synthesis.
Deoxyribonucleases, Type III Site-Specific are a type of enzyme that cleaves DNA at specific sequences. They are also known as restriction endonucleases and are found in bacteria, where they play a role in the defense against foreign DNA, such as that from viruses. These enzymes recognize and bind to specific sites on the DNA molecule, and then cut the phosphodiester bonds between the sugar and phosphate groups of the DNA backbone, resulting in double-stranded breaks at the recognition site. The ends of the cleaved DNA molecules are often "sticky" or complementary to each other, allowing for the joining of DNA fragments from different sources through a process called ligation.
Type III restriction enzymes are unique because they require two recognition sites in close proximity to each other on the same DNA molecule in order to cleave the DNA. They also have both endonuclease and methyltransferase activities, which allows them to modify their own recognition site to prevent self-destruction.
These enzymes are widely used in molecular biology research for various purposes such as cloning, genome editing, and DNA fingerprinting.
Deoxyribonucleases, Type I Site-Specific are a group of enzymes that cleave the phosphodiester bonds in the DNA backbone at specific recognition sites. They are also known as restriction endonucleases or restriction enzymes. These enzymes play a crucial role in the restriction modification system, which provides bacterial and archaeal cells with a defense mechanism against foreign DNA, such as that of bacteriophages (viruses that infect bacteria).
Type I site-specific deoxyribonucleases are complex multifunctional enzymes composed of several subunits. They have three main activities: sequence-specific double-stranded DNA cleavage, ATP-dependent DNA translocation, and methylation of recognition sites. These enzymes recognize specific palindromic sequences in the DNA (usually 4-8 base pairs long) and cleave the phosphodiester bond at a defined distance from the recognition site, often resulting in staggered cuts that leave overhanging single-stranded ends.
Type I restriction enzymes require magnesium ions as cofactors for their endonuclease activity and ATP for their translocase activity. They are generally less specific than other types of restriction enzymes (Types II and III) since they cleave DNA within a broader range around the recognition site, rather than at fixed positions.
The restriction-modification system consists of two components: a restriction endonuclease (such as Type I deoxyribonucleases) that cuts foreign DNA at specific sites and a methyltransferase that modifies the host's DNA by adding methyl groups to the same recognition sites, protecting it from cleavage. This system allows the cell to distinguish between its own DNA and foreign DNA, providing an effective defense mechanism against invading genetic elements.
In summary, Deoxyribonucleases, Type I Site-Specific are restriction endonucleases that recognize specific sequences in double-stranded DNA and cleave the phosphodiester bonds at defined distances from the recognition site. They play a critical role in the bacterial and archaeal defense system against foreign DNA by selectively degrading invading genetic elements while sparing the host's methylated DNA.
Estrogen receptors (ERs) are a type of nuclear receptor protein that are expressed in various tissues and cells throughout the body. They play a critical role in the regulation of gene expression and cellular responses to the hormone estrogen. There are two main subtypes of ERs, ERα and ERβ, which have distinct molecular structures, expression patterns, and functions.
ERs function as transcription factors that bind to specific DNA sequences called estrogen response elements (EREs) in the promoter regions of target genes. When estrogen binds to the ER, it causes a conformational change in the receptor that allows it to recruit co-activator proteins and initiate transcription of the target gene. This process can lead to a variety of cellular responses, including changes in cell growth, differentiation, and metabolism.
Estrogen receptors are involved in a wide range of physiological processes, including the development and maintenance of female reproductive tissues, bone homeostasis, cardiovascular function, and cognitive function. They have also been implicated in various pathological conditions, such as breast cancer, endometrial cancer, and osteoporosis. As a result, ERs are an important target for therapeutic interventions in these diseases.
Estradiol is a type of estrogen, which is a female sex hormone. It is the most potent and dominant form of estrogen in humans. Estradiol plays a crucial role in the development and maintenance of secondary sexual characteristics in women, such as breast development and regulation of the menstrual cycle. It also helps maintain bone density, protect the lining of the uterus, and is involved in cognition and mood regulation.
Estradiol is produced primarily by the ovaries, but it can also be synthesized in smaller amounts by the adrenal glands and fat cells. In men, estradiol is produced from testosterone through a process called aromatization. Abnormal levels of estradiol can contribute to various health issues, such as hormonal imbalances, infertility, osteoporosis, and certain types of cancer.
Deoxyribonuclease HpaII, also known as HpaII endonuclease or simply HpaII, is an enzyme that cleaves double-stranded DNA at the recognition site 5'-CCGG-3'. It is a type of restriction endonuclease that is isolated from the bacterium Haemophilus parainfluenzae. The 'H' and the 'pa' in HpaII stand for Haemophilus parainfluenzae, and the Roman numeral II indicates that it was the second such enzyme to be discovered from this bacterial species.
The HpaII enzyme cuts the DNA strand between the two Gs in the recognition site, leaving a 5'-overhang of two unpaired cytosines on the 3'-end of each cleaved strand. This specificity makes it useful for various molecular biology techniques, such as genetic fingerprinting, genome mapping, and DNA sequencing.
It is worth noting that HpaII is sensitive to methylation at the internal cytosine residue within its recognition site. If the inner cytosine in the 5'-CCGG-3' sequence is methylated (i.e., 5-methylcytosine), HpaII will not cut the DNA at that site, which can be exploited for epigenetic studies and DNA methylation analysis.
Deoxyribonucleases, Type II Site-Specific are a type of enzymes that cleave phosphodiester bonds in DNA molecules at specific recognition sites. They are called "site-specific" because they cut DNA at particular sequences, rather than at random or nonspecific locations. These enzymes belong to the class of endonucleases and play crucial roles in various biological processes such as DNA recombination, repair, and restriction.
Type II deoxyribonucleases are further classified into several subtypes based on their cofactor requirements, recognition site sequences, and cleavage patterns. The most well-known examples of Type II deoxyribonucleases are the restriction endonucleases, which recognize specific DNA motifs in double-stranded DNA and cleave them, generating sticky ends or blunt ends. These enzymes are widely used in molecular biology research for various applications such as genetic engineering, cloning, and genome analysis.
It is important to note that the term "Deoxyribonucleases, Type II Site-Specific" refers to a broad category of enzymes with similar properties and functions, rather than a specific enzyme or family of enzymes. Therefore, providing a concise medical definition for this term can be challenging, as it covers a wide range of enzymes with distinct characteristics and applications.
Teniposide is a synthetic podophyllotoxin derivative, which is an antineoplastic agent. It works by interfering with the DNA synthesis and function of cancer cells, leading to cell cycle arrest and apoptosis (programmed cell death). Teniposide is primarily used in the treatment of acute lymphoblastic leukemia (ALL) and other malignancies in children. It is often administered through intravenous infusion and is typically used in combination with other chemotherapeutic agents.
The medical definition of Teniposide can be stated as:
Teniposide, chemically known as (4'-demethylepipodophyllotoxin 9-[4,6-O-(R)-benzylidene-α-L-glucopyranoside]), is a semi-synthetic podophyllotoxin derivative with antineoplastic activity. It inhibits DNA topoisomerase II, leading to the formation of DNA-topoisomerase II cleavable complexes, G2 arrest, and apoptosis in cancer cells. Teniposide is primarily used in the treatment of acute lymphoblastic leukemia (ALL) and other malignancies in children, often administered through intravenous infusion and typically used in combination with other chemotherapeutic agents.
Casein Kinase II (CK2) is a serine/threonine protein kinase that is widely expressed in eukaryotic cells and is involved in the regulation of various cellular processes. It is a heterotetrameric enzyme, consisting of two catalytic subunits (alpha and alpha') and two regulatory subunits (beta).
CK2 phosphorylates a wide range of substrates, including transcription factors, signaling proteins, and other kinases. It is known to play roles in cell cycle regulation, apoptosis, DNA damage response, and protein stability, among others. CK2 activity is often found to be elevated in various types of cancer, making it a potential target for cancer therapy.
Methylation, in the context of genetics and epigenetics, refers to the addition of a methyl group (CH3) to a molecule, usually to the nitrogenous base of DNA or to the side chain of amino acids in proteins. In DNA methylation, this process typically occurs at the 5-carbon position of cytosine residues that precede guanine residues (CpG sites) and is catalyzed by enzymes called DNA methyltransferases (DNMTs).
DNA methylation plays a crucial role in regulating gene expression, genomic imprinting, X-chromosome inactivation, and suppression of repetitive elements. Hypermethylation or hypomethylation of specific genes can lead to altered gene expression patterns, which have been associated with various human diseases, including cancer.
In summary, methylation is a fundamental epigenetic modification that influences genomic stability, gene regulation, and cellular function by introducing methyl groups to DNA or proteins.
Collagen Type II is a specific type of collagen that is a major component of the extracellular matrix in articular cartilage, which is the connective tissue that covers and protects the ends of bones in joints. It is also found in other tissues such as the vitreous humor of the eye and the inner ear.
Collagen Type II is a triple helix molecule composed of three polypeptide chains that contain a high proportion of the amino acids proline and hydroxyproline. This type of collagen provides structural support and elasticity to tissues, and it also plays a role in the regulation of cell behavior and signaling.
Collagen Type II is a target for autoimmune responses in conditions such as rheumatoid arthritis, where the immune system mistakenly attacks the body's own collagen, leading to joint inflammation and damage. It is also a common component of various dietary supplements and therapies used to support joint health and treat osteoarthritis.
Molecular sequence data refers to the specific arrangement of molecules, most commonly nucleotides in DNA or RNA, or amino acids in proteins, that make up a biological macromolecule. This data is generated through laboratory techniques such as sequencing, and provides information about the exact order of the constituent molecules. This data is crucial in various fields of biology, including genetics, evolution, and molecular biology, allowing for comparisons between different organisms, identification of genetic variations, and studies of gene function and regulation.